[INFO] cloning repository https://github.com/jakob-schuster/restrander-testing-rig
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/jakob-schuster/restrander-testing-rig" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjakob-schuster%2Frestrander-testing-rig", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjakob-schuster%2Frestrander-testing-rig'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] b87cc7b6080ed7851175dc3f53c2f9f4022d88e5
[INFO] testing jakob-schuster/restrander-testing-rig against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjakob-schuster%2Frestrander-testing-rig" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/jakob-schuster/restrander-testing-rig
[INFO] finished tweaking git repo https://github.com/jakob-schuster/restrander-testing-rig
[INFO] tweaked toml for git repo https://github.com/jakob-schuster/restrander-testing-rig written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/jakob-schuster/restrander-testing-rig on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/jakob-schuster/restrander-testing-rig already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 169de8b86da02290a67af97f3ab195eea6b966f21f19c7a8454671ff145137bf
[INFO] running `Command { std: "docker" "start" "-a" "169de8b86da02290a67af97f3ab195eea6b966f21f19c7a8454671ff145137bf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "169de8b86da02290a67af97f3ab195eea6b966f21f19c7a8454671ff145137bf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "169de8b86da02290a67af97f3ab195eea6b966f21f19c7a8454671ff145137bf", kill_on_drop: false }`
[INFO] [stdout] 169de8b86da02290a67af97f3ab195eea6b966f21f19c7a8454671ff145137bf
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 863dc0f4f0073b8c6be51b8373423ba1161a83a72113fa0628f7202ad0ce3226
[INFO] running `Command { std: "docker" "start" "-a" "863dc0f4f0073b8c6be51b8373423ba1161a83a72113fa0628f7202ad0ce3226", kill_on_drop: false }`
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[INFO] [stderr]    Compiling proc-macro2 v1.0.63
[INFO] [stderr]    Compiling unicode-ident v1.0.10
[INFO] [stderr]    Compiling quote v1.0.29
[INFO] [stderr]    Compiling memoffset v0.9.0
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.15
[INFO] [stderr]    Compiling crossbeam-queue v0.3.8
[INFO] [stderr]    Compiling serde v1.0.164
[INFO] [stderr]    Compiling safemem v0.3.3
[INFO] [stderr]    Compiling serde_json v1.0.99
[INFO] [stderr]    Compiling unicode-xid v0.2.4
[INFO] [stderr]    Compiling ryu v1.0.13
[INFO] [stderr]    Compiling either v1.8.1
[INFO] [stderr]    Compiling scoped_threadpool v0.1.9
[INFO] [stderr]    Compiling itoa v1.0.6
[INFO] [stderr]    Compiling buf_redux v0.8.4
[INFO] [stderr]    Compiling itertools v0.11.0
[INFO] [stderr]    Compiling crossbeam-channel v0.5.8
[INFO] [stderr]    Compiling crossbeam-deque v0.8.3
[INFO] [stderr]    Compiling syn v2.0.25
[INFO] [stderr]    Compiling crossbeam v0.8.2
[INFO] [stderr]    Compiling const_format_proc_macros v0.2.31
[INFO] [stderr]    Compiling const_format v0.2.31
[INFO] [stderr]    Compiling serde_derive v1.0.171
[INFO] [stderr]    Compiling seq_io v0.3.1
[INFO] [stderr]    Compiling restrander-testing-rig v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused imports: `Config` and `Method`
[INFO] [stdout]  --> src/config.rs:1:43
[INFO] [stdout]   |
[INFO] [stdout] 1 | use crate::{fastq::AccuracyResult, json::{Config, Method}};
[INFO] [stdout]   |                                           ^^^^^^  ^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `fmt::format` and `path::Path`
[INFO] [stdout]  --> src/json.rs:1:11
[INFO] [stdout]   |
[INFO] [stdout] 1 | use std::{fmt::format, fs::File, io::Write, path::Path};
[INFO] [stdout]   |           ^^^^^^^^^^^                       ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `iproduct`
[INFO] [stdout]  --> src/json.rs:3:17
[INFO] [stdout]   |
[INFO] [stdout] 3 | use itertools::{iproduct, Itertools};
[INFO] [stdout]   |                 ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `error`
[INFO] [stdout]  --> src/json.rs:4:18
[INFO] [stdout]   |
[INFO] [stdout] 4 | use serde_json::{error, json, Value};
[INFO] [stdout]   |                  ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `constants` and `self`
[INFO] [stdout]  --> src/json.rs:7:14
[INFO] [stdout]   |
[INFO] [stdout] 7 |     config::{self, Protocol},
[INFO] [stdout]   |              ^^^^
[INFO] [stdout] 8 |     constants,
[INFO] [stdout]   |     ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::hash::Hash`
[INFO] [stdout]  --> src/paf.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use std::hash::Hash;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `collections::HashMap` and `fs::remove_file`
[INFO] [stdout]  --> src/pychopper.rs:1:11
[INFO] [stdout]   |
[INFO] [stdout] 1 | use std::{collections::HashMap, fs::remove_file, process::Command, time::Instant};
[INFO] [stdout]   |           ^^^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `PafRead`
[INFO] [stdout]  --> src/pychopper.rs:8:11
[INFO] [stdout]   |
[INFO] [stdout] 8 |     paf::{PafRead, PafReads},
[INFO] [stdout]   |           ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]  --> src/restrander.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use std::collections::HashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::fs::remove_file`
[INFO] [stdout]  --> src/restrander.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use std::fs::remove_file;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `crate::json::Config`
[INFO] [stdout]  --> src/restrander.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 | use crate::json::Config;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `PafRead`
[INFO] [stdout]  --> src/restrander.rs:8:18
[INFO] [stdout]   |
[INFO] [stdout] 8 | use crate::paf::{PafRead, PafReads};
[INFO] [stdout]   |                  ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `command`
[INFO] [stdout]   --> src/pychopper.rs:41:9
[INFO] [stdout]    |
[INFO] [stdout] 41 |     let command = format!(
[INFO] [stdout]    |         ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_command`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `paf_reads`
[INFO] [stdout]   --> src/pychopper.rs:83:5
[INFO] [stdout]    |
[INFO] [stdout] 83 |     paf_reads: &PafReads,
[INFO] [stdout]    |     ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_paf_reads`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `new_from_args` is never used
[INFO] [stdout]    --> src/main.rs:251:12
[INFO] [stdout]     |
[INFO] [stdout] 250 | impl GridTestInput {
[INFO] [stdout]     | ------------------ associated function in this implementation
[INFO] [stdout] 251 |     pub fn new_from_args() -> GridTestInput {
[INFO] [stdout]     |            ^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `generic` is never read
[INFO] [stdout]   --> src/config.rs:27:9
[INFO] [stdout]    |
[INFO] [stdout] 25 | pub struct ProgramConfig {
[INFO] [stdout]    |            ------------- field in this struct
[INFO] [stdout] 26 |     pub specific: SpecificProgramConfig,
[INFO] [stdout] 27 |     pub generic: GenericProgramConfig,
[INFO] [stdout]    |         ^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `ProgramConfig` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: enum `PipelineStep` is never used
[INFO] [stdout]   --> src/config.rs:67:10
[INFO] [stdout]    |
[INFO] [stdout] 67 | pub enum PipelineStep {
[INFO] [stdout]    |          ^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `PipelineStep` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `OUTPUT_FILENAME` is never used
[INFO] [stdout]  --> src/constants.rs:6:11
[INFO] [stdout]   |
[INFO] [stdout] 6 | pub const OUTPUT_FILENAME: &str = "/home/jakob/Documents/restrander-paper/error-rate-testing/temp.fq";
[INFO] [stdout]   |           ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `total` is never used
[INFO] [stdout]   --> src/fastq.rs:53:8
[INFO] [stdout]    |
[INFO] [stdout] 52 | impl AccuracyResultExact {
[INFO] [stdout]    | ------------------------ method in this implementation
[INFO] [stdout] 53 |     fn total(&self) -> u64 {
[INFO] [stdout]    |        ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `parse_nanoprep` is never used
[INFO] [stdout]    --> src/fastq.rs:170:8
[INFO] [stdout]     |
[INFO] [stdout] 170 | pub fn parse_nanoprep(filename: &str, paf_reads: &[PafRead]) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated items `DEFAULT_ERROR_RATE`, `default_pipeline`, `default_config`, and `to_filename` are never used
[INFO] [stdout]   --> src/json.rs:21:11
[INFO] [stdout]    |
[INFO] [stdout] 20 | impl Config {
[INFO] [stdout]    | ----------- associated items in this implementation
[INFO] [stdout] 21 |     const DEFAULT_ERROR_RATE: f64 = 0.25;
[INFO] [stdout]    |           ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 24 |     fn default_pipeline(protocol: &Protocol) -> Pipeline {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 28 |     fn default_config() -> Config {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 49 |     pub fn to_filename(self) -> String {
[INFO] [stdout]    |            ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variant `Poly` is never constructed
[INFO] [stdout]   --> src/json.rs:66:5
[INFO] [stdout]    |
[INFO] [stdout] 65 | pub enum Method {
[INFO] [stdout]    |          ------ variant in this enum
[INFO] [stdout] 66 |     Poly(u64, u64),
[INFO] [stdout]    |     ^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Method` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated items `default_poly`, `default_primer`, and `to_filename` are never used
[INFO] [stdout]    --> src/json.rs:71:8
[INFO] [stdout]     |
[INFO] [stdout] 70  | impl Method {
[INFO] [stdout]     | ----------- associated items in this implementation
[INFO] [stdout] 71  |     fn default_poly() -> Method {
[INFO] [stdout]     |        ^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 75  |     fn default_primer() -> Method {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 103 |     fn to_filename(&self) -> String {
[INFO] [stdout]     |        ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `make_desired_configs` is never used
[INFO] [stdout]    --> src/json.rs:116:8
[INFO] [stdout]     |
[INFO] [stdout] 116 | pub fn make_desired_configs(config_dir: &str, protocol: &Protocol) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `make_error_rate_config` is never used
[INFO] [stdout]    --> src/json.rs:182:4
[INFO] [stdout]     |
[INFO] [stdout] 182 | fn make_error_rate_config(error_rate: f64, protocol: &Protocol) -> Config {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `make_search_size_config` is never used
[INFO] [stdout]    --> src/json.rs:198:4
[INFO] [stdout]     |
[INFO] [stdout] 198 | fn make_search_size_config(search_size: u64, protocol: Protocol) -> Config {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `make_no_primer_config` is never used
[INFO] [stdout]    --> src/json.rs:206:4
[INFO] [stdout]     |
[INFO] [stdout] 206 | fn make_no_primer_config() -> Config {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `make_no_poly_config` is never used
[INFO] [stdout]    --> src/json.rs:214:4
[INFO] [stdout]     |
[INFO] [stdout] 214 | fn make_no_poly_config(protocol: Protocol) -> Config {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `insert`, `get`, and `size` are never used
[INFO] [stdout]   --> src/paf.rs:26:12
[INFO] [stdout]    |
[INFO] [stdout] 18 | impl PafReads {
[INFO] [stdout]    | ------------- methods in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 26 |     pub fn insert(mut self, read: PafRead) {
[INFO] [stdout]    |            ^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 41 |     pub fn get(self, name: String) -> char {
[INFO] [stdout]    |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 48 |     pub fn size(self) -> i32 {
[INFO] [stdout]    |            ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 9.77s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "863dc0f4f0073b8c6be51b8373423ba1161a83a72113fa0628f7202ad0ce3226", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "863dc0f4f0073b8c6be51b8373423ba1161a83a72113fa0628f7202ad0ce3226", kill_on_drop: false }`
[INFO] [stdout] 863dc0f4f0073b8c6be51b8373423ba1161a83a72113fa0628f7202ad0ce3226
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 4093b00149b28bbe0423e65ef18e72a3c2c5038f95483d2958d246269d8e216c
[INFO] running `Command { std: "docker" "start" "-a" "4093b00149b28bbe0423e65ef18e72a3c2c5038f95483d2958d246269d8e216c", kill_on_drop: false }`
[INFO] [stderr]    Compiling restrander-testing-rig v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused imports: `Config` and `Method`
[INFO] [stdout]  --> src/config.rs:1:43
[INFO] [stdout]   |
[INFO] [stdout] 1 | use crate::{fastq::AccuracyResult, json::{Config, Method}};
[INFO] [stdout]   |                                           ^^^^^^  ^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `fmt::format` and `path::Path`
[INFO] [stdout]  --> src/json.rs:1:11
[INFO] [stdout]   |
[INFO] [stdout] 1 | use std::{fmt::format, fs::File, io::Write, path::Path};
[INFO] [stdout]   |           ^^^^^^^^^^^                       ^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `iproduct`
[INFO] [stdout]  --> src/json.rs:3:17
[INFO] [stdout]   |
[INFO] [stdout] 3 | use itertools::{iproduct, Itertools};
[INFO] [stdout]   |                 ^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `error`
[INFO] [stdout]  --> src/json.rs:4:18
[INFO] [stdout]   |
[INFO] [stdout] 4 | use serde_json::{error, json, Value};
[INFO] [stdout]   |                  ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `constants` and `self`
[INFO] [stdout]  --> src/json.rs:7:14
[INFO] [stdout]   |
[INFO] [stdout] 7 |     config::{self, Protocol},
[INFO] [stdout]   |              ^^^^
[INFO] [stdout] 8 |     constants,
[INFO] [stdout]   |     ^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::hash::Hash`
[INFO] [stdout]  --> src/paf.rs:3:5
[INFO] [stdout]   |
[INFO] [stdout] 3 | use std::hash::Hash;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused imports: `collections::HashMap` and `fs::remove_file`
[INFO] [stdout]  --> src/pychopper.rs:1:11
[INFO] [stdout]   |
[INFO] [stdout] 1 | use std::{collections::HashMap, fs::remove_file, process::Command, time::Instant};
[INFO] [stdout]   |           ^^^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `PafRead`
[INFO] [stdout]  --> src/pychopper.rs:8:11
[INFO] [stdout]   |
[INFO] [stdout] 8 |     paf::{PafRead, PafReads},
[INFO] [stdout]   |           ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::collections::HashMap`
[INFO] [stdout]  --> src/restrander.rs:1:5
[INFO] [stdout]   |
[INFO] [stdout] 1 | use std::collections::HashMap;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::fs::remove_file`
[INFO] [stdout]  --> src/restrander.rs:2:5
[INFO] [stdout]   |
[INFO] [stdout] 2 | use std::fs::remove_file;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `crate::json::Config`
[INFO] [stdout]  --> src/restrander.rs:7:5
[INFO] [stdout]   |
[INFO] [stdout] 7 | use crate::json::Config;
[INFO] [stdout]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `PafRead`
[INFO] [stdout]  --> src/restrander.rs:8:18
[INFO] [stdout]   |
[INFO] [stdout] 8 | use crate::paf::{PafRead, PafReads};
[INFO] [stdout]   |                  ^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `command`
[INFO] [stdout]   --> src/pychopper.rs:41:9
[INFO] [stdout]    |
[INFO] [stdout] 41 |     let command = format!(
[INFO] [stdout]    |         ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_command`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `paf_reads`
[INFO] [stdout]   --> src/pychopper.rs:83:5
[INFO] [stdout]    |
[INFO] [stdout] 83 |     paf_reads: &PafReads,
[INFO] [stdout]    |     ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_paf_reads`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated function `new_from_args` is never used
[INFO] [stdout]    --> src/main.rs:251:12
[INFO] [stdout]     |
[INFO] [stdout] 250 | impl GridTestInput {
[INFO] [stdout]     | ------------------ associated function in this implementation
[INFO] [stdout] 251 |     pub fn new_from_args() -> GridTestInput {
[INFO] [stdout]     |            ^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: field `generic` is never read
[INFO] [stdout]   --> src/config.rs:27:9
[INFO] [stdout]    |
[INFO] [stdout] 25 | pub struct ProgramConfig {
[INFO] [stdout]    |            ------------- field in this struct
[INFO] [stdout] 26 |     pub specific: SpecificProgramConfig,
[INFO] [stdout] 27 |     pub generic: GenericProgramConfig,
[INFO] [stdout]    |         ^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `ProgramConfig` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: enum `PipelineStep` is never used
[INFO] [stdout]   --> src/config.rs:67:10
[INFO] [stdout]    |
[INFO] [stdout] 67 | pub enum PipelineStep {
[INFO] [stdout]    |          ^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `PipelineStep` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `OUTPUT_FILENAME` is never used
[INFO] [stdout]  --> src/constants.rs:6:11
[INFO] [stdout]   |
[INFO] [stdout] 6 | pub const OUTPUT_FILENAME: &str = "/home/jakob/Documents/restrander-paper/error-rate-testing/temp.fq";
[INFO] [stdout]   |           ^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `total` is never used
[INFO] [stdout]   --> src/fastq.rs:53:8
[INFO] [stdout]    |
[INFO] [stdout] 52 | impl AccuracyResultExact {
[INFO] [stdout]    | ------------------------ method in this implementation
[INFO] [stdout] 53 |     fn total(&self) -> u64 {
[INFO] [stdout]    |        ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `parse_nanoprep` is never used
[INFO] [stdout]    --> src/fastq.rs:170:8
[INFO] [stdout]     |
[INFO] [stdout] 170 | pub fn parse_nanoprep(filename: &str, paf_reads: &[PafRead]) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated items `DEFAULT_ERROR_RATE`, `default_pipeline`, `default_config`, and `to_filename` are never used
[INFO] [stdout]   --> src/json.rs:21:11
[INFO] [stdout]    |
[INFO] [stdout] 20 | impl Config {
[INFO] [stdout]    | ----------- associated items in this implementation
[INFO] [stdout] 21 |     const DEFAULT_ERROR_RATE: f64 = 0.25;
[INFO] [stdout]    |           ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 24 |     fn default_pipeline(protocol: &Protocol) -> Pipeline {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 28 |     fn default_config() -> Config {
[INFO] [stdout]    |        ^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 49 |     pub fn to_filename(self) -> String {
[INFO] [stdout]    |            ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variant `Poly` is never constructed
[INFO] [stdout]   --> src/json.rs:66:5
[INFO] [stdout]    |
[INFO] [stdout] 65 | pub enum Method {
[INFO] [stdout]    |          ------ variant in this enum
[INFO] [stdout] 66 |     Poly(u64, u64),
[INFO] [stdout]    |     ^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `Method` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: associated items `default_poly`, `default_primer`, and `to_filename` are never used
[INFO] [stdout]    --> src/json.rs:71:8
[INFO] [stdout]     |
[INFO] [stdout] 70  | impl Method {
[INFO] [stdout]     | ----------- associated items in this implementation
[INFO] [stdout] 71  |     fn default_poly() -> Method {
[INFO] [stdout]     |        ^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 75  |     fn default_primer() -> Method {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 103 |     fn to_filename(&self) -> String {
[INFO] [stdout]     |        ^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `make_desired_configs` is never used
[INFO] [stdout]    --> src/json.rs:116:8
[INFO] [stdout]     |
[INFO] [stdout] 116 | pub fn make_desired_configs(config_dir: &str, protocol: &Protocol) {
[INFO] [stdout]     |        ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `make_error_rate_config` is never used
[INFO] [stdout]    --> src/json.rs:182:4
[INFO] [stdout]     |
[INFO] [stdout] 182 | fn make_error_rate_config(error_rate: f64, protocol: &Protocol) -> Config {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `make_search_size_config` is never used
[INFO] [stdout]    --> src/json.rs:198:4
[INFO] [stdout]     |
[INFO] [stdout] 198 | fn make_search_size_config(search_size: u64, protocol: Protocol) -> Config {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `make_no_primer_config` is never used
[INFO] [stdout]    --> src/json.rs:206:4
[INFO] [stdout]     |
[INFO] [stdout] 206 | fn make_no_primer_config() -> Config {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: function `make_no_poly_config` is never used
[INFO] [stdout]    --> src/json.rs:214:4
[INFO] [stdout]     |
[INFO] [stdout] 214 | fn make_no_poly_config(protocol: Protocol) -> Config {
[INFO] [stdout]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `insert`, `get`, and `size` are never used
[INFO] [stdout]   --> src/paf.rs:26:12
[INFO] [stdout]    |
[INFO] [stdout] 18 | impl PafReads {
[INFO] [stdout]    | ------------- methods in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 26 |     pub fn insert(mut self, read: PafRead) {
[INFO] [stdout]    |            ^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 41 |     pub fn get(self, name: String) -> char {
[INFO] [stdout]    |            ^^^
[INFO] [stdout] ...
[INFO] [stdout] 48 |     pub fn size(self) -> i32 {
[INFO] [stdout]    |            ^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.35s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "4093b00149b28bbe0423e65ef18e72a3c2c5038f95483d2958d246269d8e216c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4093b00149b28bbe0423e65ef18e72a3c2c5038f95483d2958d246269d8e216c", kill_on_drop: false }`
[INFO] [stdout] 4093b00149b28bbe0423e65ef18e72a3c2c5038f95483d2958d246269d8e216c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] cb22188b9d7c68e1b3e039ede5138a7b0ef9b5a5de9ce3c1afc9a9ec181d24e4
[INFO] running `Command { std: "docker" "start" "-a" "cb22188b9d7c68e1b3e039ede5138a7b0ef9b5a5de9ce3c1afc9a9ec181d24e4", kill_on_drop: false }`
[INFO] [stderr] warning: unused imports: `Config` and `Method`
[INFO] [stderr]  --> src/config.rs:1:43
[INFO] [stderr]   |
[INFO] [stderr] 1 | use crate::{fastq::AccuracyResult, json::{Config, Method}};
[INFO] [stderr]   |                                           ^^^^^^  ^^^^^^
[INFO] [stderr]   |
[INFO] [stderr]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused imports: `fmt::format` and `path::Path`
[INFO] [stderr]  --> src/json.rs:1:11
[INFO] [stderr]   |
[INFO] [stderr] 1 | use std::{fmt::format, fs::File, io::Write, path::Path};
[INFO] [stderr]   |           ^^^^^^^^^^^                       ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `iproduct`
[INFO] [stderr]  --> src/json.rs:3:17
[INFO] [stderr]   |
[INFO] [stderr] 3 | use itertools::{iproduct, Itertools};
[INFO] [stderr]   |                 ^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `error`
[INFO] [stderr]  --> src/json.rs:4:18
[INFO] [stderr]   |
[INFO] [stderr] 4 | use serde_json::{error, json, Value};
[INFO] [stderr]   |                  ^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused imports: `constants` and `self`
[INFO] [stderr]  --> src/json.rs:7:14
[INFO] [stderr]   |
[INFO] [stderr] 7 |     config::{self, Protocol},
[INFO] [stderr]   |              ^^^^
[INFO] [stderr] 8 |     constants,
[INFO] [stderr]   |     ^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `std::hash::Hash`
[INFO] [stderr]  --> src/paf.rs:3:5
[INFO] [stderr]   |
[INFO] [stderr] 3 | use std::hash::Hash;
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused imports: `collections::HashMap` and `fs::remove_file`
[INFO] [stderr]  --> src/pychopper.rs:1:11
[INFO] [stderr]   |
[INFO] [stderr] 1 | use std::{collections::HashMap, fs::remove_file, process::Command, time::Instant};
[INFO] [stderr]   |           ^^^^^^^^^^^^^^^^^^^^  ^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `PafRead`
[INFO] [stderr]  --> src/pychopper.rs:8:11
[INFO] [stderr]   |
[INFO] [stderr] 8 |     paf::{PafRead, PafReads},
[INFO] [stderr]   |           ^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `std::collections::HashMap`
[INFO] [stderr]  --> src/restrander.rs:1:5
[INFO] [stderr]   |
[INFO] [stderr] 1 | use std::collections::HashMap;
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `std::fs::remove_file`
[INFO] [stderr]  --> src/restrander.rs:2:5
[INFO] [stderr]   |
[INFO] [stderr] 2 | use std::fs::remove_file;
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `crate::json::Config`
[INFO] [stderr]  --> src/restrander.rs:7:5
[INFO] [stderr]   |
[INFO] [stderr] 7 | use crate::json::Config;
[INFO] [stderr]   |     ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `PafRead`
[INFO] [stderr]  --> src/restrander.rs:8:18
[INFO] [stderr]   |
[INFO] [stderr] 8 | use crate::paf::{PafRead, PafReads};
[INFO] [stderr]   |                  ^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `command`
[INFO] [stderr]   --> src/pychopper.rs:41:9
[INFO] [stderr]    |
[INFO] [stderr] 41 |     let command = format!(
[INFO] [stderr]    |         ^^^^^^^ help: if this is intentional, prefix it with an underscore: `_command`
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `paf_reads`
[INFO] [stderr]   --> src/pychopper.rs:83:5
[INFO] [stderr]    |
[INFO] [stderr] 83 |     paf_reads: &PafReads,
[INFO] [stderr]    |     ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_paf_reads`
[INFO] [stderr] 
[INFO] [stderr] warning: associated function `new_from_args` is never used
[INFO] [stderr]    --> src/main.rs:251:12
[INFO] [stderr]     |
[INFO] [stderr] 250 | impl GridTestInput {
[INFO] [stderr]     | ------------------ associated function in this implementation
[INFO] [stderr] 251 |     pub fn new_from_args() -> GridTestInput {
[INFO] [stderr]     |            ^^^^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: field `generic` is never read
[INFO] [stderr]   --> src/config.rs:27:9
[INFO] [stderr]    |
[INFO] [stderr] 25 | pub struct ProgramConfig {
[INFO] [stderr]    |            ------------- field in this struct
[INFO] [stderr] 26 |     pub specific: SpecificProgramConfig,
[INFO] [stderr] 27 |     pub generic: GenericProgramConfig,
[INFO] [stderr]    |         ^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `ProgramConfig` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stderr] 
[INFO] [stderr] warning: enum `PipelineStep` is never used
[INFO] [stderr]   --> src/config.rs:67:10
[INFO] [stderr]    |
[INFO] [stderr] 67 | pub enum PipelineStep {
[INFO] [stderr]    |          ^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `PipelineStep` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stderr] 
[INFO] [stderr] warning: constant `OUTPUT_FILENAME` is never used
[INFO] [stderr]  --> src/constants.rs:6:11
[INFO] [stderr]   |
[INFO] [stderr] 6 | pub const OUTPUT_FILENAME: &str = "/home/jakob/Documents/restrander-paper/error-rate-testing/temp.fq";
[INFO] [stderr]   |           ^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: method `total` is never used
[INFO] [stderr]   --> src/fastq.rs:53:8
[INFO] [stderr]    |
[INFO] [stderr] 52 | impl AccuracyResultExact {
[INFO] [stderr]    | ------------------------ method in this implementation
[INFO] [stderr] 53 |     fn total(&self) -> u64 {
[INFO] [stderr]    |        ^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `parse_nanoprep` is never used
[INFO] [stderr]    --> src/fastq.rs:170:8
[INFO] [stderr]     |
[INFO] [stderr] 170 | pub fn parse_nanoprep(filename: &str, paf_reads: &[PafRead]) {
[INFO] [stderr]     |        ^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: associated items `DEFAULT_ERROR_RATE`, `default_pipeline`, `default_config`, and `to_filename` are never used
[INFO] [stderr]   --> src/json.rs:21:11
[INFO] [stderr]    |
[INFO] [stderr] 20 | impl Config {
[INFO] [stderr]    | ----------- associated items in this implementation
[INFO] [stderr] 21 |     const DEFAULT_ERROR_RATE: f64 = 0.25;
[INFO] [stderr]    |           ^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 24 |     fn default_pipeline(protocol: &Protocol) -> Pipeline {
[INFO] [stderr]    |        ^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 28 |     fn default_config() -> Config {
[INFO] [stderr]    |        ^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 49 |     pub fn to_filename(self) -> String {
[INFO] [stderr]    |            ^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variant `Poly` is never constructed
[INFO] [stderr]   --> src/json.rs:66:5
[INFO] [stderr]    |
[INFO] [stderr] 65 | pub enum Method {
[INFO] [stderr]    |          ------ variant in this enum
[INFO] [stderr] 66 |     Poly(u64, u64),
[INFO] [stderr]    |     ^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `Method` has derived impls for the traits `Debug` and `Clone`, but these are intentionally ignored during dead code analysis
[INFO] [stderr] 
[INFO] [stderr] warning: associated items `default_poly`, `default_primer`, and `to_filename` are never used
[INFO] [stderr]    --> src/json.rs:71:8
[INFO] [stderr]     |
[INFO] [stderr] 70  | impl Method {
[INFO] [stderr]     | ----------- associated items in this implementation
[INFO] [stderr] 71  |     fn default_poly() -> Method {
[INFO] [stderr]     |        ^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 75  |     fn default_primer() -> Method {
[INFO] [stderr]     |        ^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 103 |     fn to_filename(&self) -> String {
[INFO] [stderr]     |        ^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `make_desired_configs` is never used
[INFO] [stderr]    --> src/json.rs:116:8
[INFO] [stderr]     |
[INFO] [stderr] 116 | pub fn make_desired_configs(config_dir: &str, protocol: &Protocol) {
[INFO] [stderr]     |        ^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `make_error_rate_config` is never used
[INFO] [stderr]    --> src/json.rs:182:4
[INFO] [stderr]     |
[INFO] [stderr] 182 | fn make_error_rate_config(error_rate: f64, protocol: &Protocol) -> Config {
[INFO] [stderr]     |    ^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `make_search_size_config` is never used
[INFO] [stderr]    --> src/json.rs:198:4
[INFO] [stderr]     |
[INFO] [stderr] 198 | fn make_search_size_config(search_size: u64, protocol: Protocol) -> Config {
[INFO] [stderr]     |    ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `make_no_primer_config` is never used
[INFO] [stderr]    --> src/json.rs:206:4
[INFO] [stderr]     |
[INFO] [stderr] 206 | fn make_no_primer_config() -> Config {
[INFO] [stderr]     |    ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: function `make_no_poly_config` is never used
[INFO] [stderr]    --> src/json.rs:214:4
[INFO] [stderr]     |
[INFO] [stderr] 214 | fn make_no_poly_config(protocol: Protocol) -> Config {
[INFO] [stderr]     |    ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: methods `insert`, `get`, and `size` are never used
[INFO] [stderr]   --> src/paf.rs:26:12
[INFO] [stderr]    |
[INFO] [stderr] 18 | impl PafReads {
[INFO] [stderr]    | ------------- methods in this implementation
[INFO] [stderr] ...
[INFO] [stderr] 26 |     pub fn insert(mut self, read: PafRead) {
[INFO] [stderr]    |            ^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 41 |     pub fn get(self, name: String) -> char {
[INFO] [stderr]    |            ^^^
[INFO] [stderr] ...
[INFO] [stderr] 48 |     pub fn size(self) -> i32 {
[INFO] [stderr]    |            ^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: `restrander-testing-rig` (bin "restrander-testing-rig" test) generated 29 warnings (run `cargo fix --bin "restrander-testing-rig" --tests` to apply 12 suggestions)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.03s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/restrander_testing_rig-e4665d5c2b6f4d64)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "cb22188b9d7c68e1b3e039ede5138a7b0ef9b5a5de9ce3c1afc9a9ec181d24e4", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "cb22188b9d7c68e1b3e039ede5138a7b0ef9b5a5de9ce3c1afc9a9ec181d24e4", kill_on_drop: false }`
[INFO] [stdout] cb22188b9d7c68e1b3e039ede5138a7b0ef9b5a5de9ce3c1afc9a9ec181d24e4