[INFO] cloning repository https://github.com/chfi/gfainject
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/chfi/gfainject" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Fgfainject", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Fgfainject'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] e56cba362047e7137352858dfba5f56e944cbf06
[INFO] testing chfi/gfainject against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_libc_patch_0
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchfi%2Fgfainject" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/chfi/gfainject
[INFO] finished tweaking git repo https://github.com/chfi/gfainject
[INFO] tweaked toml for git repo https://github.com/chfi/gfainject written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/chfi/gfainject on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/chfi/gfainject already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-core v0.9.0
[INFO] [stderr]   Downloaded retain_mut v0.1.7
[INFO] [stderr]   Downloaded pico-args v0.5.0
[INFO] [stderr]   Downloaded btoi v0.4.2
[INFO] [stderr]   Downloaded noodles-bgzf v0.17.0
[INFO] [stderr]   Downloaded noodles-fasta v0.16.0
[INFO] [stderr]   Downloaded bit-vec v0.6.3
[INFO] [stderr]   Downloaded noodles-csi v0.11.0
[INFO] [stderr]   Downloaded lexical-parse-integer v0.8.6
[INFO] [stderr]   Downloaded bytemuck v1.12.3
[INFO] [stderr]   Downloaded anyhow v1.0.66
[INFO] [stderr]   Downloaded lexical-core v0.8.5
[INFO] [stderr]   Downloaded bytes v1.2.1
[INFO] [stderr]   Downloaded lexical-write-integer v0.8.5
[INFO] [stderr]   Downloaded noodles-bam v0.24.0
[INFO] [stderr]   Downloaded lexical-util v0.8.5
[INFO] [stderr]   Downloaded crossbeam-channel v0.5.6
[INFO] [stderr]   Downloaded lexical-write-float v0.8.5
[INFO] [stderr]   Downloaded miniz_oxide v0.5.4
[INFO] [stderr]   Downloaded indexmap v1.9.1
[INFO] [stderr]   Downloaded lexical-parse-float v0.8.5
[INFO] [stderr]   Downloaded flate2 v1.0.24
[INFO] [stderr]   Downloaded noodles-sam v0.21.0
[INFO] [stderr]   Downloaded crossbeam-utils v0.8.12
[INFO] [stderr]   Downloaded roaring v0.10.1
[INFO] [stderr]   Downloaded noodles v0.29.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 6e81d188ece596b41db43cf898fcf311ac791c60151bf6fbdb74f3d35484cbff
[INFO] running `Command { std: "docker" "start" "-a" "6e81d188ece596b41db43cf898fcf311ac791c60151bf6fbdb74f3d35484cbff", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6e81d188ece596b41db43cf898fcf311ac791c60151bf6fbdb74f3d35484cbff", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6e81d188ece596b41db43cf898fcf311ac791c60151bf6fbdb74f3d35484cbff", kill_on_drop: false }`
[INFO] [stdout] 6e81d188ece596b41db43cf898fcf311ac791c60151bf6fbdb74f3d35484cbff
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 0ac78fc17d22808285696516ccb5fb3401a3e2c456527e87f015a39600fc8558
[INFO] running `Command { std: "docker" "start" "-a" "0ac78fc17d22808285696516ccb5fb3401a3e2c456527e87f015a39600fc8558", kill_on_drop: false }`
[INFO] [stderr]    Compiling crossbeam-utils v0.8.12
[INFO] [stderr]    Compiling lexical-util v0.8.5
[INFO] [stderr]    Compiling byteorder v1.4.3
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling bytes v1.2.1
[INFO] [stderr]    Compiling indexmap v1.9.1
[INFO] [stderr]    Compiling noodles-core v0.9.0
[INFO] [stderr]    Compiling bit-vec v0.6.3
[INFO] [stderr]    Compiling hashbrown v0.12.3
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling miniz_oxide v0.5.4
[INFO] [stderr]    Compiling anyhow v1.0.66
[INFO] [stderr]    Compiling retain_mut v0.1.7
[INFO] [stderr]    Compiling bytemuck v1.12.3
[INFO] [stderr]    Compiling pico-args v0.5.0
[INFO] [stderr]    Compiling roaring v0.10.1
[INFO] [stderr]    Compiling flate2 v1.0.24
[INFO] [stderr]    Compiling lexical-write-integer v0.8.5
[INFO] [stderr]    Compiling lexical-parse-integer v0.8.6
[INFO] [stderr]    Compiling crossbeam-channel v0.5.6
[INFO] [stderr]    Compiling lexical-parse-float v0.8.5
[INFO] [stderr]    Compiling lexical-write-float v0.8.5
[INFO] [stderr]    Compiling noodles-bgzf v0.17.0
[INFO] [stderr]    Compiling lexical-core v0.8.5
[INFO] [stderr]    Compiling btoi v0.4.2
[INFO] [stderr]    Compiling noodles-csi v0.11.0
[INFO] [stderr]    Compiling noodles-fasta v0.16.0
[INFO] [stderr]    Compiling noodles-sam v0.21.0
[INFO] [stderr]    Compiling noodles-bam v0.24.0
[INFO] [stderr]    Compiling noodles v0.29.0
[INFO] [stderr]    Compiling gfainject v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused variable: `args`
[INFO] [stdout]    --> src/main.rs:300:12
[INFO] [stdout]     |
[INFO] [stdout] 300 |     let Ok(args) = parse_args() else {
[INFO] [stdout]     |            ^^^^ help: if this is intentional, prefix it with an underscore: `_args`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `ref_seqs`
[INFO] [stdout]    --> src/main.rs:332:9
[INFO] [stdout]     |
[INFO] [stdout] 332 |     let ref_seqs = bam.read_reference_sequences()?;
[INFO] [stdout]     |         ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_ref_seqs`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `path_id` and `pos_range` are never read
[INFO] [stdout]   --> src/main.rs:34:5
[INFO] [stdout]    |
[INFO] [stdout] 33 | struct PathStepRangeIter<'a> {
[INFO] [stdout]    |        ----------------- fields in this struct
[INFO] [stdout] 34 |     path_id: usize,
[INFO] [stdout]    |     ^^^^^^^
[INFO] [stdout] 35 |     pos_range: std::ops::Range<u32>,
[INFO] [stdout]    |     ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 9.43s
[INFO] running `Command { std: "docker" "inspect" "0ac78fc17d22808285696516ccb5fb3401a3e2c456527e87f015a39600fc8558", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0ac78fc17d22808285696516ccb5fb3401a3e2c456527e87f015a39600fc8558", kill_on_drop: false }`
[INFO] [stdout] 0ac78fc17d22808285696516ccb5fb3401a3e2c456527e87f015a39600fc8558
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] c9cb23cc907dea6857fc9006bcb42db44f82d30a886e201f24d5cb3fc7c7353d
[INFO] running `Command { std: "docker" "start" "-a" "c9cb23cc907dea6857fc9006bcb42db44f82d30a886e201f24d5cb3fc7c7353d", kill_on_drop: false }`
[INFO] [stderr]    Compiling gfainject v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused variable: `args`
[INFO] [stdout]    --> src/main.rs:300:12
[INFO] [stdout]     |
[INFO] [stdout] 300 |     let Ok(args) = parse_args() else {
[INFO] [stdout]     |            ^^^^ help: if this is intentional, prefix it with an underscore: `_args`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `ref_seqs`
[INFO] [stdout]    --> src/main.rs:332:9
[INFO] [stdout]     |
[INFO] [stdout] 332 |     let ref_seqs = bam.read_reference_sequences()?;
[INFO] [stdout]     |         ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_ref_seqs`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: fields `path_id` and `pos_range` are never read
[INFO] [stdout]   --> src/main.rs:34:5
[INFO] [stdout]    |
[INFO] [stdout] 33 | struct PathStepRangeIter<'a> {
[INFO] [stdout]    |        ----------------- fields in this struct
[INFO] [stdout] 34 |     path_id: usize,
[INFO] [stdout]    |     ^^^^^^^
[INFO] [stdout] 35 |     pos_range: std::ops::Range<u32>,
[INFO] [stdout]    |     ^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.57s
[INFO] running `Command { std: "docker" "inspect" "c9cb23cc907dea6857fc9006bcb42db44f82d30a886e201f24d5cb3fc7c7353d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c9cb23cc907dea6857fc9006bcb42db44f82d30a886e201f24d5cb3fc7c7353d", kill_on_drop: false }`
[INFO] [stdout] c9cb23cc907dea6857fc9006bcb42db44f82d30a886e201f24d5cb3fc7c7353d
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] ebc0020392888069b96864b590e386f7707d68c51ed85fe924a0cea45fef0ffd
[INFO] running `Command { std: "docker" "start" "-a" "ebc0020392888069b96864b590e386f7707d68c51ed85fe924a0cea45fef0ffd", kill_on_drop: false }`
[INFO] [stderr] warning: unused variable: `args`
[INFO] [stderr]    --> src/main.rs:300:12
[INFO] [stderr]     |
[INFO] [stderr] 300 |     let Ok(args) = parse_args() else {
[INFO] [stderr]     |            ^^^^ help: if this is intentional, prefix it with an underscore: `_args`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_variables)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused variable: `ref_seqs`
[INFO] [stderr]    --> src/main.rs:332:9
[INFO] [stderr]     |
[INFO] [stderr] 332 |     let ref_seqs = bam.read_reference_sequences()?;
[INFO] [stderr]     |         ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_ref_seqs`
[INFO] [stderr] 
[INFO] [stderr] warning: fields `path_id` and `pos_range` are never read
[INFO] [stderr]   --> src/main.rs:34:5
[INFO] [stderr]    |
[INFO] [stderr] 33 | struct PathStepRangeIter<'a> {
[INFO] [stderr]    |        ----------------- fields in this struct
[INFO] [stderr] 34 |     path_id: usize,
[INFO] [stderr]    |     ^^^^^^^
[INFO] [stderr] 35 |     pos_range: std::ops::Range<u32>,
[INFO] [stderr]    |     ^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(dead_code)]` on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `gfainject` (bin "gfainject" test) generated 3 warnings
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.08s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/gfainject-a0fc2c119f242dcc)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "ebc0020392888069b96864b590e386f7707d68c51ed85fe924a0cea45fef0ffd", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ebc0020392888069b96864b590e386f7707d68c51ed85fe924a0cea45fef0ffd", kill_on_drop: false }`
[INFO] [stdout] ebc0020392888069b96864b590e386f7707d68c51ed85fe924a0cea45fef0ffd