[INFO] fetching crate hpo 0.12.0...
[INFO] testing hpo-0.12.0 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_getrandom_patch_2
[INFO] extracting crate hpo 0.12.0 into /workspace/builds/worker-1-tc1/source
[INFO] started tweaking crates.io crate hpo 0.12.0
[INFO] removed 0 missing examples
[INFO] finished tweaking crates.io crate hpo 0.12.0
[INFO] tweaked toml for crates.io crate hpo 0.12.0 written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate hpo 0.12.0 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate hpo 0.12.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded simple_logger v4.3.3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 1dabbf3358844c2f590506f2e790a02e14cb1c52cc50c952460e9ed9aef78cd2
[INFO] running `Command { std: "docker" "start" "-a" "1dabbf3358844c2f590506f2e790a02e14cb1c52cc50c952460e9ed9aef78cd2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "1dabbf3358844c2f590506f2e790a02e14cb1c52cc50c952460e9ed9aef78cd2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "1dabbf3358844c2f590506f2e790a02e14cb1c52cc50c952460e9ed9aef78cd2", kill_on_drop: false }`
[INFO] [stdout] 1dabbf3358844c2f590506f2e790a02e14cb1c52cc50c952460e9ed9aef78cd2
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 328a85ddd58d4d436e33ebc67f07e6035239f0b6fbc0e633c08cb752975c444f
[INFO] running `Command { std: "docker" "start" "-a" "328a85ddd58d4d436e33ebc67f07e6035239f0b6fbc0e633c08cb752975c444f", kill_on_drop: false }`
[INFO] [stderr]    Compiling unicode-ident v1.0.17
[INFO] [stderr]    Compiling smallvec v1.14.0
[INFO] [stderr]    Compiling tracing-core v0.1.33
[INFO] [stderr]    Compiling proc-macro2 v1.0.93
[INFO] [stderr]    Compiling quote v1.0.38
[INFO] [stderr]    Compiling syn v2.0.98
[INFO] [stderr]    Compiling tracing-attributes v0.1.28
[INFO] [stderr]    Compiling thiserror-impl v2.0.11
[INFO] [stderr]    Compiling tracing v0.1.41
[INFO] [stderr]    Compiling thiserror v2.0.11
[INFO] [stderr]    Compiling hpo v0.12.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 10.22s
[INFO] running `Command { std: "docker" "inspect" "328a85ddd58d4d436e33ebc67f07e6035239f0b6fbc0e633c08cb752975c444f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "328a85ddd58d4d436e33ebc67f07e6035239f0b6fbc0e633c08cb752975c444f", kill_on_drop: false }`
[INFO] [stdout] 328a85ddd58d4d436e33ebc67f07e6035239f0b6fbc0e633c08cb752975c444f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] a1e55c3b86782a96dc0cf0183d8ee14c64c62fb7e62cf1f0742c83e40bfc43e6
[INFO] running `Command { std: "docker" "start" "-a" "a1e55c3b86782a96dc0cf0183d8ee14c64c62fb7e62cf1f0742c83e40bfc43e6", kill_on_drop: false }`
[INFO] [stderr]    Compiling serde v1.0.218
[INFO] [stderr]    Compiling serde_derive v1.0.218
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling indexmap v1.9.3
[INFO] [stderr]    Compiling ryu v1.0.19
[INFO] [stderr]    Compiling half v2.4.1
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling itertools v0.10.5
[INFO] [stderr]    Compiling textwrap v0.16.1
[INFO] [stderr]    Compiling rayon v1.10.0
[INFO] [stderr]    Compiling time v0.3.37
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling log v0.4.26
[INFO] [stderr]    Compiling oorandom v11.1.4
[INFO] [stderr]    Compiling ciborium-ll v0.2.2
[INFO] [stderr]    Compiling clap v3.2.25
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling simple_logger v4.3.3
[INFO] [stderr]    Compiling plotters v0.3.7
[INFO] [stderr]    Compiling criterion-plot v0.5.0
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling serde_json v1.0.139
[INFO] [stderr]    Compiling ciborium v0.2.2
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling criterion v0.4.0
[INFO] [stderr]    Compiling hpo v0.12.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 22.86s
[INFO] running `Command { std: "docker" "inspect" "a1e55c3b86782a96dc0cf0183d8ee14c64c62fb7e62cf1f0742c83e40bfc43e6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a1e55c3b86782a96dc0cf0183d8ee14c64c62fb7e62cf1f0742c83e40bfc43e6", kill_on_drop: false }`
[INFO] [stdout] a1e55c3b86782a96dc0cf0183d8ee14c64c62fb7e62cf1f0742c83e40bfc43e6
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] d08c3d0129f60bf196ba93689e8249b7584d00e20f712fc891541a6bba31da8e
[INFO] running `Command { std: "docker" "start" "-a" "d08c3d0129f60bf196ba93689e8249b7584d00e20f712fc891541a6bba31da8e", kill_on_drop: false }`
[INFO] [stderr]     Finished `test` profile [unoptimized + debuginfo] target(s) in 0.15s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/hpo-b38579852d322dd3)
[INFO] [stdout] 
[INFO] [stdout] running 84 tests
[INFO] [stdout] test annotations::gene::test::gene_to_binary ... ok
[INFO] [stdout] test annotations::gene::test::gene_to_and_from_binary ... ok
[INFO] [stdout] test annotations::gene::test::gene_with_non_utf8_name ... ok
[INFO] [stdout] test annotations::gene::test::gene_with_long_name ... ok
[INFO] [stdout] test annotations::gene::test::gene_with_wrong_length ... ok
[INFO] [stdout] test annotations::omim_disease::test::disease_with_non_utf8_name ... ok
[INFO] [stdout] test annotations::omim_disease::test::disease_with_wrong_length ... ok
[INFO] [stdout] test matrix::tests::test_col_iterator_sums ... ok
[INFO] [stdout] test matrix::tests::test_column_index_iterator ... ok
[INFO] [stdout] test annotations::omim_disease::test::disease_to_binary ... ok
[INFO] [stdout] test annotations::omim_disease::test::disease_with_long_name ... ok
[INFO] [stdout] test annotations::omim_disease::test::disease_to_and_from_binary ... ok
[INFO] [stdout] test matrix::tests::test_empty_row_iterator ... ok
[INFO] [stdout] test matrix::tests::test_row_index_iterator ... ok
[INFO] [stdout] test matrix::tests::test_row_iterator_sums ... ok
[INFO] [stdout] test matrix::tests::test_column_iterator ... ok
[INFO] [stdout] test matrix::tests::test_row_iterator ... ok
[INFO] [stdout] test parser::disease_to_hpo::test_omim_parsing::test_correct_omim ... ok
[INFO] [stdout] test parser::disease_to_hpo::test_omim_parsing::test_invalid_hpo_id ... ok
[INFO] [stdout] test parser::disease_to_hpo::test_omim_parsing::test_correct_orpha ... ok
[INFO] [stdout] test parser::disease_to_hpo::test_omim_parsing::test_invalid_omim_id ... ok
[INFO] [stdout] test parser::disease_to_hpo::test_omim_parsing::test_skip_comment ... ok
[INFO] [stdout] test parser::gene_to_hpo::test::test_remove_header_hashtag ... ok
[INFO] [stdout] test parser::gene_to_hpo::test::test_remove_header_fails ... ok
[INFO] [stdout] test parser::disease_to_hpo::test_omim_parsing::test_skip_not ... ok
[INFO] [stdout] test parser::disease_to_hpo::test_omim_parsing::test_invalid_input ... ok
[INFO] [stdout] test parser::gene_to_hpo::test::test_remove_header_hpo_id ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_genes_to_phenotype::test_parse_correct_line_without_newline ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_genes_to_phenotype::test_parse_missing_hpo ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_genes_to_phenotype::test_parse_invalid_hpo ... ok
[INFO] [stdout] test parser::gene_to_hpo::test::test_remove_header_ncbi_gene ... ok
[INFO] [stdout] test parser::disease_to_hpo::test_omim_parsing::test_skip_orpha_not ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_phenotpye_to_genes::test_parse_correct_line_without_newline ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_phenotpye_to_genes::test_parse_missing_hpo ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_genes_to_phenotype::test_parse_correct_line_with_newline ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_genes_to_phenotype::test_parse_missing_symbol ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_phenotpye_to_genes::test_parse_correct_line_with_newline ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_genes_to_phenotype::test_parse_missing_id ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_phenotpye_to_genes::test_parse_invalid_hpo ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_phenotpye_to_genes::test_parse_empty_symbol ... ok
[INFO] [stdout] test parser::gene_to_hpo::test_phenotpye_to_genes::test_parse_missing_id ... ok
[INFO] [stdout] test stats::hypergeom::statrs::test::min ... ok
[INFO] [stdout] test stats::hypergeom::statrs::test::test_fcache ... ok
[INFO] [stdout] test stats::hypergeom::statrs::test::test_hypergeom_build ... ok
[INFO] [stdout] test stats::hypergeom::statrs::test::test_hypergeom_max ... ok
[INFO] [stdout] test stats::test::iterate_counts ... ok
[INFO] [stdout] test stats::hypergeom::statrs::test::test_hypergeom_cdf ... ok
[INFO] [stdout] test stats::test::iterate_frequencies ... ok
[INFO] [stdout] test term::group::tests::test_bitand_2 ... ok
[INFO] [stdout] test term::group::tests::test_bitor_set2 ... ok
[INFO] [stdout] test term::group::tests::test_bitor_set1 ... ok
[INFO] [stdout] test term::group::tests::test_bitand ... ok
[INFO] [stdout] test term::group::tests::test_hpogroup_iter ... ok
[INFO] [stdout] test term::group::tests::test_bitor_set3 ... ok
[INFO] [stdout] test term::group::tests::test_bitor_set4 ... ok
[INFO] [stdout] test ontology::test::add_parents_from_bytes ... ok
[INFO] [stdout] test ontology::test::diseases_by_name ... ok
[INFO] [stdout] test ontology::test::add_terms_from_bytes ... ok
[INFO] [stdout] test term::hpoterm::test_categories::test_categories ... ok
[INFO] [stdout] test parser::hp_obo::test::split_terms ... ok
[INFO] [stdout] test ontology::test::graphiv ... ok
[INFO] [stdout] test term::internal::test::from_bytes ... ok
[INFO] [stdout] test term::internal::test::to_bytes ... ok
[INFO] [stdout] test utils::test::combinations ... ok
[INFO] [stdout] test utils::test::combinations_empty ... ok
[INFO] [stdout] test utils::test::combinations_single ... ok
[INFO] [stdout] test utils::test::combinations_two ... ok
[INFO] [stdout] test utils::test::combinations_with_none ... ok
[INFO] [stdout] test utils::test::last_row ... ok
[INFO] [stdout] test term::internal::test::from_multiple_bytes ... ok
[INFO] [stderr] error: test failed, to rerun pass `--lib`
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/hpo-b38579852d322dd3` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "d08c3d0129f60bf196ba93689e8249b7584d00e20f712fc891541a6bba31da8e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d08c3d0129f60bf196ba93689e8249b7584d00e20f712fc891541a6bba31da8e", kill_on_drop: false }`
[INFO] [stdout] d08c3d0129f60bf196ba93689e8249b7584d00e20f712fc891541a6bba31da8e