[INFO] fetching crate chainfile 0.3.0... [INFO] testing chainfile-0.3.0 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_with_getrandom_patch_0 [INFO] extracting crate chainfile 0.3.0 into /workspace/builds/worker-5-tc1/source [INFO] started tweaking crates.io crate chainfile 0.3.0 [INFO] removed 0 missing examples [INFO] finished tweaking crates.io crate chainfile 0.3.0 [INFO] tweaked toml for crates.io crate chainfile 0.3.0 written to /workspace/builds/worker-5-tc1/source/Cargo.toml [INFO] validating manifest of crates.io crate chainfile 0.3.0 on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate chainfile 0.3.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded wasm-bindgen-macro v0.2.94 [INFO] [stderr] Downloaded omics-core v0.1.0 [INFO] [stderr] Downloaded weighted_rand v0.4.2 [INFO] [stderr] Downloaded omics v0.2.0 [INFO] [stderr] Downloaded wasm-bindgen v0.2.94 [INFO] [stderr] Downloaded clap-verbosity-flag v2.2.2 [INFO] [stderr] Downloaded tabled_derive v0.8.0 [INFO] [stderr] Downloaded nonempty v0.9.0 [INFO] [stderr] Downloaded noodles v0.87.0 [INFO] [stderr] Downloaded noodles-bgzf v0.34.0 [INFO] [stderr] Downloaded js-sys v0.3.71 [INFO] [stderr] Downloaded wasm-bindgen-macro-support v0.2.94 [INFO] [stderr] Downloaded rust-lapper v1.1.0 [INFO] [stderr] Downloaded flate2 v1.0.34 [INFO] [stderr] Downloaded papergrid v0.12.0 [INFO] [stderr] Downloaded tabled v0.16.0 [INFO] [stderr] Downloaded noodles-fasta v0.46.0 [INFO] [stderr] Downloaded omics-coordinate v0.2.0 [INFO] [stderr] Downloaded wasm-bindgen-backend v0.2.94 [INFO] [stderr] Downloaded wasm-bindgen-futures v0.4.44 [INFO] [stderr] Downloaded noodles-core v0.15.0 [INFO] [stderr] Downloaded wasm-bindgen-shared v0.2.94 [INFO] [stderr] Downloaded syn v2.0.94 [INFO] [stderr] Downloaded web-sys v0.3.71 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 9d28effcafd8af830e71ef93005f516be933e7ef9921dc2d3cfccfea9abbceb0 [INFO] running `Command { std: "docker" "start" "-a" "9d28effcafd8af830e71ef93005f516be933e7ef9921dc2d3cfccfea9abbceb0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "9d28effcafd8af830e71ef93005f516be933e7ef9921dc2d3cfccfea9abbceb0", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9d28effcafd8af830e71ef93005f516be933e7ef9921dc2d3cfccfea9abbceb0", kill_on_drop: false }` [INFO] [stdout] 9d28effcafd8af830e71ef93005f516be933e7ef9921dc2d3cfccfea9abbceb0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] a0c3c551a28a45c12f81ae4c4305e946bc83213b909ae4ae56d4d2b135e141f4 [INFO] running `Command { std: "docker" "start" "-a" "a0c3c551a28a45c12f81ae4c4305e946bc83213b909ae4ae56d4d2b135e141f4", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.92 [INFO] [stderr] Compiling thiserror v2.0.9 [INFO] [stderr] Compiling adler2 v2.0.0 [INFO] [stderr] Compiling omics-core v0.1.0 [INFO] [stderr] Compiling nonempty v0.9.0 [INFO] [stderr] Compiling tracing-core v0.1.32 [INFO] [stderr] Compiling crc32fast v1.4.2 [INFO] [stderr] Compiling rust-lapper v1.1.0 [INFO] [stderr] Compiling miniz_oxide v0.8.0 [INFO] [stderr] Compiling tracing-log v0.2.0 [INFO] [stderr] Compiling flate2 v1.0.34 [INFO] [stderr] Compiling quote v1.0.37 [INFO] [stderr] Compiling syn v2.0.94 [INFO] [stderr] Compiling thiserror-impl v2.0.9 [INFO] [stderr] Compiling omics-coordinate v0.2.0 [INFO] [stderr] Compiling omics v0.2.0 [INFO] [stderr] Compiling chainfile v0.3.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 8.84s [INFO] running `Command { std: "docker" "inspect" "a0c3c551a28a45c12f81ae4c4305e946bc83213b909ae4ae56d4d2b135e141f4", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "a0c3c551a28a45c12f81ae4c4305e946bc83213b909ae4ae56d4d2b135e141f4", kill_on_drop: false }` [INFO] [stdout] a0c3c551a28a45c12f81ae4c4305e946bc83213b909ae4ae56d4d2b135e141f4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] c889d91bbcf36588d33a74984c69f7268ddc01ce0d12457a33451a96f7d773ec [INFO] running `Command { std: "docker" "start" "-a" "c889d91bbcf36588d33a74984c69f7268ddc01ce0d12457a33451a96f7d773ec", kill_on_drop: false }` [INFO] [stderr] Compiling crossbeam-utils v0.8.20 [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling bstr v1.11.3 [INFO] [stderr] Compiling bytecount v0.6.8 [INFO] [stderr] Compiling unicode-width v0.1.11 [INFO] [stderr] Compiling papergrid v0.12.0 [INFO] [stderr] Compiling noodles-core v0.15.0 [INFO] [stderr] Compiling crossbeam-channel v0.5.13 [INFO] [stderr] Compiling noodles-bgzf v0.34.0 [INFO] [stderr] Compiling noodles-fasta v0.46.0 [INFO] [stderr] Compiling noodles v0.87.0 [INFO] [stderr] Compiling tabled_derive v0.8.0 [INFO] [stderr] Compiling tabled v0.16.0 [INFO] [stderr] Compiling chainfile v0.3.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 9.23s [INFO] running `Command { std: "docker" "inspect" "c889d91bbcf36588d33a74984c69f7268ddc01ce0d12457a33451a96f7d773ec", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c889d91bbcf36588d33a74984c69f7268ddc01ce0d12457a33451a96f7d773ec", kill_on_drop: false }` [INFO] [stdout] c889d91bbcf36588d33a74984c69f7268ddc01ce0d12457a33451a96f7d773ec [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 31f20ff123bbaa8f64b0bbee95113023c04c1c56637e95e05c83bec711ada09a [INFO] running `Command { std: "docker" "start" "-a" "31f20ff123bbaa8f64b0bbee95113023c04c1c56637e95e05c83bec711ada09a", kill_on_drop: false }` [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.12s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/chainfile-d98a476d40bb9691) [INFO] [stdout] [INFO] [stdout] running 52 tests [INFO] [stdout] test alignment::section::builder::tests::fails_with_multiple_headers ... ok [INFO] [stdout] test alignment::section::builder::tests::fails_with_no_data ... ok [INFO] [stdout] test alignment::section::builder::tests::fails_with_no_header ... ok [INFO] [stdout] test alignment::section::data::tests::invalid_dq ... ok [INFO] [stdout] test alignment::section::data::tests::invalid_nonterminating_dq ... ok [INFO] [stdout] test alignment::section::data::tests::invalid_dt ... ok [INFO] [stdout] test alignment::section::data::tests::invalid_nonterminating_dt ... ok [INFO] [stdout] test alignment::section::data::tests::invalid_number_of_fields ... ok [INFO] [stdout] test alignment::section::data::tests::invalid_size ... ok [INFO] [stdout] test alignment::section::data::tests::invalid_terminating_dq ... ok [INFO] [stdout] test alignment::section::data::tests::invalid_terminating_dt ... ok [INFO] [stdout] test alignment::section::data::tests::nonterminating_alignment_data ... ok [INFO] [stdout] test alignment::section::data::tests::nonterminating_alignment_data_display ... ok [INFO] [stdout] test alignment::section::data::tests::terminating_alignment_data ... ok [INFO] [stdout] test alignment::section::data::tests::terminating_alignment_data_display ... ok [INFO] [stdout] test alignment::section::header::sequence::tests::display ... ok [INFO] [stdout] test alignment::section::header::sequence::tests::invalid_alignment_end ... ok [INFO] [stdout] test alignment::section::header::sequence::tests::invalid_alignment_start ... ok [INFO] [stdout] test alignment::section::header::sequence::tests::invalid_chromosome_size ... ok [INFO] [stdout] test alignment::section::header::sequence::tests::invalid_strand ... ok [INFO] [stdout] test alignment::section::header::sequence::tests::try_new ... ok [INFO] [stdout] test alignment::section::header::tests::display ... ok [INFO] [stdout] test alignment::section::header::tests::end_is_greater_than_size_query ... ok [INFO] [stdout] test alignment::section::header::tests::incorrect_number_of_fields ... ok [INFO] [stdout] test alignment::section::header::tests::invalid_id ... ok [INFO] [stdout] test alignment::section::header::tests::end_is_greater_than_size_reference ... ok [INFO] [stdout] test alignment::section::header::tests::invalid_prefix ... ok [INFO] [stdout] test alignment::section::header::tests::invalid_query_sequence ... ok [INFO] [stdout] test alignment::section::header::tests::invalid_reference_sequence ... ok [INFO] [stdout] test alignment::section::header::tests::invalid_score ... ok [INFO] [stdout] test alignment::section::tests::test_invalid_sections_abrupt_end_in_section ... ok [INFO] [stdout] test alignment::section::header::tests::parse ... ok [INFO] [stdout] test alignment::section::tests::test_invalid_sections_alignment_data_between_sections ... ok [INFO] [stdout] test alignment::section::tests::test_invalid_sections_blank_line_in_section ... ok [INFO] [stdout] test alignment::section::tests::test_invalid_sections_header_in_section ... ok [INFO] [stdout] test alignment::section::tests::test_valid_sections ... ok [INFO] [stdout] test liftover::machine::tests::test_valid_negative_strand_liftover ... ok [INFO] [stdout] test liftover::machine::tests::test_valid_negative_to_positive_strand_liftover ... ok [INFO] [stdout] test liftover::machine::tests::test_nonexistent_negative_strand_interval_liftover ... ok [INFO] [stdout] test liftover::machine::tests::test_nonexistent_positive_strand_interval_liftover ... ok [INFO] [stdout] test liftover::machine::tests::test_valid_positive_strand_liftover ... ok [INFO] [stdout] test liftover::machine::tests::test_valid_positive_to_negative_strand_liftover ... ok [INFO] [stdout] test liftover::stepthrough::interval_pair::tests::interval_sizes_dont_match ... ok [INFO] [stdout] test liftover::stepthrough::interval_pair::tests::valid_interval_pair ... ok [INFO] [stdout] test liftover::stepthrough::tests::test_it_correctly_steps_through_a_valid_chain_file ... ok [INFO] [stdout] test line::tests::invalid_alignment_data_line ... ok [INFO] [stdout] test liftover::stepthrough::tests::test_it_errors_when_there_is_an_alignment_issue ... ok [INFO] [stdout] test line::tests::invalid_header_line ... ok [INFO] [stdout] test line::tests::valid_header_line ... ok [INFO] [stdout] test line::tests::valid_nonterminating_alignment_data_line ... ok [INFO] [stdout] test line::tests::valid_terminating_alignment_data_line ... ok [INFO] [stdout] test reader::tests::test_read_line ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 52 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "31f20ff123bbaa8f64b0bbee95113023c04c1c56637e95e05c83bec711ada09a", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "31f20ff123bbaa8f64b0bbee95113023c04c1c56637e95e05c83bec711ada09a", kill_on_drop: false }` [INFO] [stdout] 31f20ff123bbaa8f64b0bbee95113023c04c1c56637e95e05c83bec711ada09a