[INFO] fetching crate mfqe 0.5.0... [INFO] testing mfqe-0.5.0 against try#c066bf6804adc55193b71afdff6a56922f4a8689+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_in_2025-retry-1 [INFO] extracting crate mfqe 0.5.0 into /workspace/builds/worker-5-tc2/source [INFO] started tweaking crates.io crate mfqe 0.5.0 [INFO] finished tweaking crates.io crate mfqe 0.5.0 [INFO] tweaked toml for crates.io crate mfqe 0.5.0 written to /workspace/builds/worker-5-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate mfqe 0.5.0 on toolchain c066bf6804adc55193b71afdff6a56922f4a8689 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c066bf6804adc55193b71afdff6a56922f4a8689" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate mfqe 0.5.0 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c066bf6804adc55193b71afdff6a56922f4a8689" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+c066bf6804adc55193b71afdff6a56922f4a8689" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] feded4579226d57f62669559368b48205097a1dfd7ce550576e42dec3d8ef5af [INFO] running `Command { std: "docker" "start" "-a" "feded4579226d57f62669559368b48205097a1dfd7ce550576e42dec3d8ef5af", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "feded4579226d57f62669559368b48205097a1dfd7ce550576e42dec3d8ef5af", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "feded4579226d57f62669559368b48205097a1dfd7ce550576e42dec3d8ef5af", kill_on_drop: false }` [INFO] [stdout] feded4579226d57f62669559368b48205097a1dfd7ce550576e42dec3d8ef5af [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+c066bf6804adc55193b71afdff6a56922f4a8689" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 47d688317e169fbd7a493683e66a510c0837198b75d62de3423806e3d482f49f [INFO] running `Command { std: "docker" "start" "-a" "47d688317e169fbd7a493683e66a510c0837198b75d62de3423806e3d482f49f", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] Compiling libc v0.2.65 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling semver-parser v0.7.0 [INFO] [stderr] Compiling arrayvec v0.4.12 [INFO] [stderr] Compiling scopeguard v0.3.3 [INFO] [stderr] Compiling nodrop v0.1.14 [INFO] [stderr] Compiling memchr v2.2.1 [INFO] [stderr] Compiling rand_core v0.4.2 [INFO] [stderr] Compiling memoffset v0.2.1 [INFO] [stderr] Compiling stable_deref_trait v1.1.1 [INFO] [stderr] Compiling proc-macro2 v1.0.6 [INFO] [stderr] Compiling smallvec v0.6.12 [INFO] [stderr] Compiling crossbeam-utils v0.5.0 [INFO] [stderr] Compiling unicode-xid v0.2.0 [INFO] [stderr] Compiling syn v1.0.7 [INFO] [stderr] Compiling crc32fast v1.2.0 [INFO] [stderr] Compiling crossbeam-utils v0.6.6 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling log v0.4.8 [INFO] [stderr] Compiling semver v0.9.0 [INFO] [stderr] Compiling owning_ref v0.4.0 [INFO] [stderr] Compiling rand_core v0.3.1 [INFO] [stderr] Compiling serde v1.0.102 [INFO] [stderr] Compiling thread_local v0.3.6 [INFO] [stderr] Compiling safemem v0.2.0 [INFO] [stderr] Compiling quick-error v1.2.2 [INFO] [stderr] Compiling rustc_version v0.2.3 [INFO] [stderr] Compiling lock_api v0.1.5 [INFO] [stderr] Compiling regex-syntax v0.6.12 [INFO] [stderr] Compiling adler32 v1.0.4 [INFO] [stderr] Compiling unicode-width v0.1.6 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling miniz_oxide v0.3.5 [INFO] [stderr] Compiling humantime v1.3.0 [INFO] [stderr] Compiling termcolor v1.0.5 [INFO] [stderr] Compiling scoped_threadpool v0.1.9 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling vec_map v0.8.1 [INFO] [stderr] Compiling parking_lot_core v0.3.1 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling crossbeam-epoch v0.5.2 [INFO] [stderr] Compiling crossbeam-epoch v0.6.1 [INFO] [stderr] Compiling rand v0.5.6 [INFO] [stderr] Compiling slice-deque v0.1.16 [INFO] [stderr] Compiling atty v0.2.13 [INFO] [stderr] Compiling aho-corasick v0.7.6 [INFO] [stderr] Compiling clap v2.33.0 [INFO] [stderr] Compiling flate2 v1.0.12 [INFO] [stderr] Compiling quote v1.0.2 [INFO] [stderr] Compiling crossbeam-deque v0.5.2 [INFO] [stderr] Compiling buf_redux v0.7.1 [INFO] [stderr] Compiling parking_lot v0.6.4 [INFO] [stderr] Compiling crossbeam-channel v0.2.6 [INFO] [stderr] Compiling regex v1.3.1 [INFO] [stderr] Compiling crossbeam v0.4.1 [INFO] [stderr] Compiling env_logger v0.7.1 [INFO] [stderr] Compiling serde_derive v1.0.102 [INFO] [stderr] Compiling seq_io v0.3.0 [INFO] [stderr] Compiling mfqe v0.5.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:32:18 [INFO] [stdout] | [INFO] [stdout] 32 | \n\ [INFO] [stdout] | __________________^ [INFO] [stdout] 33 | | [INFO] [stdout] 34 | | Extract one or more sets of reads from a FASTQ (or \ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:35:63 [INFO] [stdout] | [INFO] [stdout] 35 | FASTA) file by specifying their read names.\n\n\ [INFO] [stdout] | _______________________________________________________________^ [INFO] [stdout] 36 | | [INFO] [stdout] 37 | | Read name files are uncompressed text files with read names \ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:38:37 [INFO] [stdout] | [INFO] [stdout] 38 | (without comments).\n\ [INFO] [stdout] | _____________________________________^ [INFO] [stdout] 39 | | [INFO] [stdout] 40 | | Output is gzip-compressed unless --output-uncompressed is specified, input is uncompressed.\n\ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 11.90s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.7.1 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "47d688317e169fbd7a493683e66a510c0837198b75d62de3423806e3d482f49f", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "47d688317e169fbd7a493683e66a510c0837198b75d62de3423806e3d482f49f", kill_on_drop: false }` [INFO] [stdout] 47d688317e169fbd7a493683e66a510c0837198b75d62de3423806e3d482f49f [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+c066bf6804adc55193b71afdff6a56922f4a8689" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] f410d8129c482b32d44f4d7a78a48834d2e5e3baab72245ad7215b946982fcae [INFO] running `Command { std: "docker" "start" "-a" "f410d8129c482b32d44f4d7a78a48834d2e5e3baab72245ad7215b946982fcae", kill_on_drop: false }` [INFO] [stderr] warning: no edition set: defaulting to the 2015 edition while the latest is 2024 [INFO] [stderr] Compiling autocfg v0.1.7 [INFO] [stderr] Compiling cc v1.0.46 [INFO] [stderr] Compiling getrandom v0.1.13 [INFO] [stderr] Compiling winapi v0.3.8 [INFO] [stderr] Compiling cgmath v0.16.1 [INFO] [stderr] Compiling rand v0.4.6 [INFO] [stderr] Compiling ryu v1.0.2 [INFO] [stderr] Compiling failure_derive v0.1.6 [INFO] [stderr] Compiling ppv-lite86 v0.2.6 [INFO] [stderr] Compiling approx v0.1.1 [INFO] [stderr] Compiling synstructure v0.12.1 [INFO] [stderr] Compiling rgb v0.8.14 [INFO] [stderr] Compiling rustc-demangle v0.1.16 [INFO] [stderr] Compiling itoa v0.4.4 [INFO] [stderr] Compiling environment v0.1.1 [INFO] [stderr] Compiling difference v2.0.0 [INFO] [stderr] Compiling remove_dir_all v0.5.2 [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:32:18 [INFO] [stdout] | [INFO] [stdout] 32 | \n\ [INFO] [stdout] | __________________^ [INFO] [stdout] 33 | | [INFO] [stdout] 34 | | Extract one or more sets of reads from a FASTQ (or \ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:35:63 [INFO] [stdout] | [INFO] [stdout] 35 | FASTA) file by specifying their read names.\n\n\ [INFO] [stdout] | _______________________________________________________________^ [INFO] [stdout] 36 | | [INFO] [stdout] 37 | | Read name files are uncompressed text files with read names \ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:38:37 [INFO] [stdout] | [INFO] [stdout] 38 | (without comments).\n\ [INFO] [stdout] | _____________________________________^ [INFO] [stdout] 39 | | [INFO] [stdout] 40 | | Output is gzip-compressed unless --output-uncompressed is specified, input is uncompressed.\n\ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling num-traits v0.2.8 [INFO] [stderr] Compiling serde_json v1.0.41 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling c2-chacha v0.2.3 [INFO] [stderr] Compiling rand_chacha v0.2.1 [INFO] [stderr] Compiling rand v0.7.2 [INFO] [stderr] Compiling backtrace-sys v0.1.32 [INFO] [stderr] Compiling tempfile v3.1.0 [INFO] [stderr] Compiling num-traits v0.1.43 [INFO] [stderr] Compiling backtrace v0.3.40 [INFO] [stderr] Compiling failure v0.1.6 [INFO] [stderr] Compiling winconsole v0.10.0 [INFO] [stderr] Compiling colored v1.8.0 [INFO] [stderr] Compiling assert_cli v0.6.3 [INFO] [stderr] Compiling mfqe v0.5.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:32:18 [INFO] [stdout] | [INFO] [stdout] 32 | \n\ [INFO] [stdout] | __________________^ [INFO] [stdout] 33 | | [INFO] [stdout] 34 | | Extract one or more sets of reads from a FASTQ (or \ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:35:63 [INFO] [stdout] | [INFO] [stdout] 35 | FASTA) file by specifying their read names.\n\n\ [INFO] [stdout] | _______________________________________________________________^ [INFO] [stdout] 36 | | [INFO] [stdout] 37 | | Read name files are uncompressed text files with read names \ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: multiple lines skipped by escaped newline [INFO] [stdout] --> src/main.rs:38:37 [INFO] [stdout] | [INFO] [stdout] 38 | (without comments).\n\ [INFO] [stdout] | _____________________________________^ [INFO] [stdout] 39 | | [INFO] [stdout] 40 | | Output is gzip-compressed unless --output-uncompressed is specified, input is uncompressed.\n\ [INFO] [stdout] | |_______________^ skipping everything up to and including this point [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/rcrt1.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crti.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtbeginS.o" "/tmp/rustclq0ml1/symbols.o" "<2 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libtest-*,libgetopts-*,libunicode_width-*,librustc_std_workspace_std-*}.rlib" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/{libtempfile-77e2914b98b3f56f.rlib,librand-0c5201265f4b6f3e.rlib,librand_chacha-dfd794ca6c4f4bef.rlib,libc2_chacha-9e049181c203be6d.rlib,libppv_lite86-3db1eddbb11ee7cb.rlib,librand_core-783173334b55692e.rlib,libgetrandom-de8143156b767ba9.rlib,libremove_dir_all-3a2e6d1ec33fb04e.rlib,libassert_cli-31cb189e502ca482.rlib,libserde_json-ebff5dfe9abb4042.rlib,libryu-625f0220d726d59b.rlib,libitoa-349da0bebdaefaf5.rlib,libserde-5f5199be1bd8f5c2.rlib,libfailure-dd4e0f0de5c7f79c.rlib,libbacktrace-fd270d855ae04d93.rlib,libbacktrace_sys-af74c14130f5b4c0.rlib,liblibc-62b167d68417dd0c.rlib,libcfg_if-2d17986ae484e939.rlib,librustc_demangle-dcc5b1758b30e405.rlib,libenvironment-ba2e9905f2cdca87.rlib,libdifference-a1da5c3a3156ade7.rlib,libcolored-aece958f2097afed.rlib,liblazy_static-4b136fc9bfbd2c4b.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*}.rlib" "-lunwind" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libcfg_if-*,liblibc-*}.rlib" "-lc" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-L" "/tmp/rustclq0ml1/raw-dylibs" "-Wl,-Bdynamic" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-nostartfiles" "-L" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/build/backtrace-sys-6119d822a99ea4e5/out" "-L" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained" "-L" "/lib/rustlib/x86_64-unknown-linux-musl/lib" "-o" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/test_cmdline-1037e09826b515f9" "-Wl,--gc-sections" "-static-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtendS.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtn.o" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: /usr/bin/ld: /opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libgetrandom-de8143156b767ba9.rlib(getrandom-de8143156b767ba9.getrandom.a2bcf7086bb5a3bd-cgu.0.rcgu.o): in function `getrandom::util_libc::open_readonly': [INFO] [stdout] /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/getrandom-0.1.13/src/util_libc.rs:134:(.text._ZN9getrandom9util_libc13open_readonly17h2c355e60f1de5ab2E+0x79): undefined reference to `open64' [INFO] [stdout] collect2: error: ld returned 1 exit status [INFO] [stdout] [INFO] [stdout] = note: some `extern` functions couldn't be found; some native libraries may need to be installed or have their path specified [INFO] [stdout] = note: use the `-l` flag to specify native libraries to link [INFO] [stdout] = note: use the `cargo:rustc-link-lib` directive to specify the native libraries to link with Cargo (see https://doc.rust-lang.org/cargo/reference/build-scripts.html#rustc-link-lib) [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `mfqe` (test "test_cmdline") due to 1 previous error [INFO] running `Command { std: "docker" "inspect" "f410d8129c482b32d44f4d7a78a48834d2e5e3baab72245ad7215b946982fcae", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "f410d8129c482b32d44f4d7a78a48834d2e5e3baab72245ad7215b946982fcae", kill_on_drop: false }` [INFO] [stdout] f410d8129c482b32d44f4d7a78a48834d2e5e3baab72245ad7215b946982fcae