[INFO] cloning repository https://github.com/iarpa-felix/simsplice [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/iarpa-felix/simsplice" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fiarpa-felix%2Fsimsplice", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fiarpa-felix%2Fsimsplice'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 8c091af199126d4f3f807d1275c1dc167e0f9efe [INFO] testing iarpa-felix/simsplice against try#c066bf6804adc55193b71afdff6a56922f4a8689+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_in_2025-retry-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fiarpa-felix%2Fsimsplice" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/iarpa-felix/simsplice [INFO] finished tweaking git repo https://github.com/iarpa-felix/simsplice [INFO] tweaked toml for git repo https://github.com/iarpa-felix/simsplice written to /workspace/builds/worker-5-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/iarpa-felix/simsplice on toolchain c066bf6804adc55193b71afdff6a56922f4a8689 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c066bf6804adc55193b71afdff6a56922f4a8689" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/iarpa-felix/simsplice already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c066bf6804adc55193b71afdff6a56922f4a8689" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+c066bf6804adc55193b71afdff6a56922f4a8689" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] c5e74faeae4fce2d0839e2f740b49a28ae81d58f7ace763f729340b6c7099b6d [INFO] running `Command { std: "docker" "start" "-a" "c5e74faeae4fce2d0839e2f740b49a28ae81d58f7ace763f729340b6c7099b6d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "c5e74faeae4fce2d0839e2f740b49a28ae81d58f7ace763f729340b6c7099b6d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c5e74faeae4fce2d0839e2f740b49a28ae81d58f7ace763f729340b6c7099b6d", kill_on_drop: false }` [INFO] [stdout] c5e74faeae4fce2d0839e2f740b49a28ae81d58f7ace763f729340b6c7099b6d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+c066bf6804adc55193b71afdff6a56922f4a8689" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 811c0d1f489b2e103d1926365ce2989195403ed61eb2d2e750254e58a893232b [INFO] running `Command { std: "docker" "start" "-a" "811c0d1f489b2e103d1926365ce2989195403ed61eb2d2e750254e58a893232b", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.80 [INFO] [stderr] Compiling autocfg v1.0.1 [INFO] [stderr] Compiling proc-macro2 v1.0.24 [INFO] [stderr] Compiling unicode-xid v0.2.1 [INFO] [stderr] Compiling syn v1.0.51 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling pkg-config v0.3.19 [INFO] [stderr] Compiling cfg-if v0.1.10 [INFO] [stderr] Compiling serde_derive v1.0.117 [INFO] [stderr] Compiling serde v1.0.117 [INFO] [stderr] Compiling memchr v2.3.4 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling version_check v0.9.2 [INFO] [stderr] Compiling byteorder v1.3.4 [INFO] [stderr] Compiling getrandom v0.1.15 [INFO] [stderr] Compiling bitflags v1.2.1 [INFO] [stderr] Compiling thread_local v1.0.1 [INFO] [stderr] Compiling unicode-segmentation v1.7.1 [INFO] [stderr] Compiling once_cell v1.5.2 [INFO] [stderr] Compiling proc-macro-hack v0.5.19 [INFO] [stderr] Compiling matches v0.1.8 [INFO] [stderr] Compiling ppv-lite86 v0.2.10 [INFO] [stderr] Compiling tinyvec_macros v0.1.0 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling tinyvec v1.1.0 [INFO] [stderr] Compiling proc-macro-nested v0.1.6 [INFO] [stderr] Compiling unicode-width v0.1.8 [INFO] [stderr] Compiling heck v0.3.1 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Compiling miniz_oxide v0.4.3 [INFO] [stderr] Compiling num-integer v0.1.44 [INFO] [stderr] Compiling indexmap v1.6.0 [INFO] [stderr] Compiling adler v0.2.3 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling unicode-bidi v0.3.4 [INFO] [stderr] Compiling tracing-core v0.1.17 [INFO] [stderr] Compiling percent-encoding v2.1.0 [INFO] [stderr] Compiling crc32fast v1.2.1 [INFO] [stderr] Compiling quote v1.0.7 [INFO] [stderr] Compiling const_fn v0.4.3 [INFO] [stderr] Compiling jobserver v0.1.21 [INFO] [stderr] Compiling futures-core v0.3.8 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling log v0.4.11 [INFO] [stderr] Compiling cc v1.0.65 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling hashbrown v0.9.1 [INFO] [stderr] Compiling itoa v0.4.6 [INFO] [stderr] Compiling futures-sink v0.3.8 [INFO] [stderr] Compiling quick-error v1.2.3 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling openssl v0.10.30 [INFO] [stderr] Compiling foreign-types-shared v0.1.1 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Compiling foreign-types v0.3.2 [INFO] [stderr] Compiling futures-channel v0.3.8 [INFO] [stderr] Compiling openssl-src v111.12.0+1.1.1h [INFO] [stderr] Compiling unicode-normalization v0.1.16 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling form_urlencoded v1.0.0 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling aho-corasick v0.7.15 [INFO] [stderr] Compiling crossbeam-utils v0.8.0 [INFO] [stderr] Compiling num-complex v0.2.4 [INFO] [stderr] Compiling futures-task v0.3.8 [INFO] [stderr] Compiling sharded-slab v0.1.0 [INFO] [stderr] Compiling pin-project-lite v0.2.0 [INFO] [stderr] Compiling idna v0.2.0 [INFO] [stderr] Compiling doc-comment v0.3.3 [INFO] [stderr] Compiling ryu v1.0.5 [INFO] [stderr] Compiling slab v0.4.2 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Compiling futures-io v0.3.8 [INFO] [stderr] Compiling glob v0.3.0 [INFO] [stderr] Compiling ansi_term v0.11.0 [INFO] [stderr] Compiling pin-utils v0.1.0 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Compiling native-tls v0.2.6 [INFO] [stderr] Compiling regex-syntax v0.6.21 [INFO] [stderr] Compiling url v2.2.0 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling openssl-sys v0.9.58 [INFO] [stderr] Compiling libz-sys v1.1.2 [INFO] [stderr] Compiling lzma-sys v0.1.17 [INFO] [stderr] 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[INFO] [stderr] Compiling http v0.2.1 [INFO] [stderr] Compiling parking_lot_core v0.8.0 [INFO] [stderr] Compiling addr2line v0.14.0 [INFO] [stderr] Compiling dirs v2.0.2 [INFO] [stderr] Compiling flate2 v1.0.19 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Compiling time v0.1.44 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling textwrap v0.12.1 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling strsim v0.10.0 [INFO] [stderr] Compiling termcolor v1.1.2 [INFO] [stderr] Compiling bit-vec v0.6.2 [INFO] [stderr] Compiling bio v0.32.0 [INFO] [stderr] Compiling os_str_bytes v2.4.0 [INFO] [stderr] Compiling array-macro v1.0.5 [INFO] [stderr] Compiling indenter v0.3.0 [INFO] [stderr] Compiling rustc-demangle v0.1.18 [INFO] [stderr] Compiling object v0.22.0 [INFO] [stderr] Compiling strsim v0.8.0 [INFO] [stderr] Compiling fixedbitset v0.2.0 [INFO] [stderr] Compiling remove_dir_all v0.5.3 [INFO] [stderr] Compiling wildmatch v1.0.12 [INFO] [stderr] Compiling custom_derive v0.1.7 [INFO] [stderr] Compiling petgraph v0.5.1 [INFO] [stderr] Compiling tempfile v3.1.0 [INFO] [stderr] Compiling bit-set v0.5.2 [INFO] [stderr] Compiling chrono v0.4.19 [INFO] [stderr] Compiling term v0.6.1 [INFO] [stderr] Compiling crossbeam-channel v0.5.0 [INFO] [stderr] Compiling parking_lot v0.11.1 [INFO] [stderr] Compiling statrs v0.12.0 [INFO] [stderr] Compiling ordered-float v1.1.0 [INFO] [stderr] Compiling derefable v0.1.0 [INFO] [stderr] Compiling approx v0.3.2 [INFO] [stderr] Compiling itertools-num v0.1.3 [INFO] [stderr] Compiling os_pipe v0.9.2 [INFO] [stderr] Compiling shared_child v0.3.4 [INFO] [stderr] Compiling backtrace v0.3.55 [INFO] [stderr] Compiling fxhash v0.2.1 [INFO] [stderr] Compiling byteordered v0.5.0 [INFO] [stderr] Compiling linear-map v1.2.0 [INFO] [stderr] Compiling ieee754 v0.2.6 [INFO] [stderr] Compiling pin-project-internal v1.0.2 [INFO] [stderr] Compiling tracing-attributes v0.1.11 [INFO] [stderr] Compiling futures-macro v0.3.8 [INFO] [stderr] Compiling derive-new v0.5.8 [INFO] [stderr] Compiling clap_derive v3.0.0-beta.2 [INFO] [stderr] Compiling snafu-derive v0.6.9 [INFO] [stderr] Compiling thiserror-impl v1.0.22 [INFO] [stderr] Compiling enum-map-derive v0.4.6 [INFO] [stderr] Compiling enum-map v0.6.4 [INFO] [stderr] Compiling structopt-derive v0.4.13 [INFO] [stderr] Compiling tracing v0.1.22 [INFO] [stderr] Compiling strum_macros v0.18.0 [INFO] [stderr] Compiling getset v0.0.9 [INFO] [stderr] Compiling pin-project v1.0.2 [INFO] [stderr] Compiling futures-util v0.3.8 [INFO] [stderr] Compiling tracing-error v0.1.2 [INFO] [stderr] Compiling thiserror v1.0.22 [INFO] [stderr] Compiling bytecount v0.6.1 [INFO] [stderr] Compiling color-spantrace v0.1.4 [INFO] [stderr] Compiling strum v0.18.0 [INFO] [stderr] Compiling triple_accel v0.3.4 [INFO] [stderr] Compiling owo-colors v1.1.3 [INFO] [stderr] Compiling interpol v0.2.1 [INFO] [stderr] Compiling snafu v0.6.9 [INFO] [stderr] Compiling duct v0.13.4 [INFO] [stderr] Compiling slog-term v2.6.0 [INFO] [stderr] Compiling lazy-regex v0.1.4 [INFO] [stderr] Compiling color-eyre v0.5.8 [INFO] [stderr] Compiling shell-words v1.0.0 [INFO] [stderr] Compiling maplit v1.0.2 [INFO] [stderr] Compiling linked-hash-map v0.5.3 [INFO] [stderr] Compiling libdeflater v0.5.0 [INFO] [stderr] Compiling futures-executor v0.3.8 [INFO] [stderr] Compiling futures v0.3.8 [INFO] [stderr] Compiling vec_map v0.8.2 [INFO] [stderr] Compiling bio-types v0.7.0 [INFO] [stderr] Compiling bstr v0.2.14 [INFO] [stderr] Compiling bincode v1.3.1 [INFO] [stderr] Compiling multimap v0.8.2 [INFO] [stderr] Compiling uuid v0.8.1 [INFO] [stderr] Compiling clap v3.0.0-beta.2 [INFO] [stderr] Compiling clap v2.33.3 [INFO] [stderr] Compiling csv v1.1.4 [INFO] [stderr] Compiling structopt v0.3.20 [INFO] [stderr] Compiling attohttpc v0.16.0 [INFO] [stderr] Compiling bigtools v0.1.4 [INFO] [stderr] Compiling rust-htslib v0.35.2 [INFO] [stderr] Compiling simsplice v1.0.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `Regex` [INFO] [stdout] --> src/liftover.rs:5:13 [INFO] [stdout] | [INFO] [stdout] 5 | use regex::{Regex}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `slog::info` [INFO] [stdout] --> src/liftover.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use slog::info; [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Regex` [INFO] [stdout] --> src/genvcf.rs:5:13 [INFO] [stdout] | [INFO] [stdout] 5 | use regex::{Regex, Captures}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `warn` [INFO] [stdout] --> src/simsplice.rs:23:18 [INFO] [stdout] | [INFO] [stdout] 23 | use slog::{info, warn}; [INFO] [stdout] | ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `log` [INFO] [stdout] --> src/liftover.rs:58:9 [INFO] [stdout] | [INFO] [stdout] 58 | let log = slog::Logger::root( [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_log` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: value assigned to `origpos` is never read [INFO] [stdout] --> src/simsplice.rs:399:21 [INFO] [stdout] | [INFO] [stdout] 399 | origpos = splice.start; [INFO] [stdout] | ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: maybe it is overwritten before being read? [INFO] [stdout] = note: `#[warn(unused_assignments)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `result` [INFO] [stdout] --> src/genvcf.rs:199:17 [INFO] [stdout] | [INFO] [stdout] 199 | let result = result?; [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_result` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/rcrt1.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crti.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtbeginS.o" "/tmp/rustcyZGHdb/symbols.o" "<17 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/{libeyre-af19f905499d6ac3.rlib,libindenter-548594595a193dcd.rlib,libonce_cell-cbd342ccb7c12e7b.rlib,libuuid-126c4595ac4f49f8.rlib,librust_htslib-96aeb5860441cded.rlib,libhts_sys-6ccfb78d9ff46b1d.rlib,libcurl_sys-70ef4cc40bb4e8cf.rlib,libopenssl_sys-6eae77e072d25574.rlib,liblzma_sys-5f9e8983605d757e.rlib,libbzip2_sys-c9638aaf72ff2953.rlib,liblibz_sys-3dfbd256d4b754aa.rlib,libthiserror-4578825978fc2430.rlib,libieee754-f387c6e4da54f38a.rlib,liburl-deca29522bf8cbf9.rlib,libidna-2b4f3492330173b6.rlib,libunicode_normalization-40936a2dae71fa38.rlib,libtinyvec-421956fa0423cd02.rlib,libtinyvec_macros-73d00b88c4a829da.rlib,libunicode_bidi-be338ca12d9afcbe.rlib,libform_urlencoded-f53c0a0cd86a37b9.rlib,libpercent_encoding-951eb4d810ceb450.rlib,libmatches-f5b940c1fef9c9ee.rlib,liblinear_map-fd4d8d105ce03692.rlib,libslog_term-31a3e7716dacce6a.rlib,libterm-3d74d0e99eb8d31d.rlib,libdirs-23d6c93cf0bf386b.rlib,libdirs_sys-250b07ca61d1d288.rlib,libchrono-b0f50d5e176965a0.rlib,libtime-9c62b4aef78af646.rlib,libslog-a0fdbfde5ad62a2f.rlib,liblazy_regex-bcf76cfac6cca31e.rlib,libbio-315cce322df1ccc3.rlib,libstrum-c219764435e13f15.rlib,libcsv-85abf34dd7d41f7a.rlib,libryu-bfa5bb3521d3ad0b.rlib,libitoa-1be5e5afec42f6a8.rlib,libcsv_core-b0e0d31a936522ff.rlib,libbstr-8ccf0a0d139bda49.rlib,libregex_automata-95315d764b18ce1a.rlib,libbytecount-ebc90c79858d6095.rlib,libtriple_accel-77f75c4bdd914e55.rlib,libitertools_num-8f875402f8c79f8d.rlib,libenum_map-bf7fbe09c00f1d06.rlib,libarray_macro-14e1249ffb300f00.rlib,libstatrs-3f86ad05713dab10.rlib,librand-6463b7f669d3d443.rlib,librand_chacha-40e19e357386bda7.rlib,libppv_lite86-7a089fa3b5ff621d.rlib,librand_core-d3fd96e9cccb5eb5.rlib,libgetrandom-eb094ccb174bfee1.rlib,libcfg_if-1115355c16bea3ba.rlib,libordered_float-9ab609a3f84430b7.rlib,libndarray-893abf234f07155e.rlib,libmatrixmultiply-51f13cc57b9ce9b8.rlib,libnum_complex-39a59651a32427e1.rlib,librawpointer-548a18c35990a353.rlib,libmultimap-27dd13e530789db8.rlib,libitertools-9d2bcda404b9c9fa.rlib,libeither-6fb8c1333c5e3189.rlib,libnum_integer-bd305ed477208402.rlib,libbv-89a1bb8c289d138c.rlib,libbit_set-6388fc89b02166a2.rlib,libbit_vec-3937003392b48a8f.rlib,libbio_types-70b2070155266f89.rlib,libregex-b4c3fb9d2a2b3cdd.rlib,libthread_local-b1cda5035fd2625e.rlib,libregex_syntax-7cbc41c7c61b1831.rlib,libaho_corasick-58ebd03c4ff25c9c.rlib,libmemchr-ead0ebeaaa1b6ee3.rlib,libquick_error-8be02a70a3eec9cb.rlib,libfxhash-7da46b5437140cfb.rlib,libbyteorder-457eb52d37cb6da8.rlib,libpetgraph-09b28ec2e468ca1f.rlib,libindexmap-0c480e6ccdd3553b.rlib,libhashbrown-8929fb89e66d7989.rlib,libfixedbitset-b0510dd7fe90d1a8.rlib,libsnafu-efbc03af0a917ab7.rlib,libdoc_comment-f65014f8d7363cec.rlib,libnewtype_derive-9d04e4ea92b61984.rlib,libcustom_derive-912717f7d88a8a0f.rlib,libapprox-87866fd1e7d3bdae.rlib,libnum_traits-1eefce9091b81b8d.rlib,liblinked_hash_map-8deb4827cd78a1f5.rlib,libstructopt-92ffd6fa14e26b35.rlib,liblazy_static-0abb46da822a0370.rlib,libclap-f5c65aa0323616d8.rlib,libvec_map-cfa01decd850c512.rlib,libserde-e8ab74133f859392.rlib,libtextwrap-f6f646a276d11748.rlib,libunicode_width-01eb2561cf3e5572.rlib,libstrsim-f87ffb4c17952fef.rlib,libbitflags-69d4b4f1727ccf8a.rlib,libatty-c8e9744481d5305e.rlib,liblibc-25b7f59a9843bac4.rlib,libansi_term-dbbf49b53c436b8c.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*}.rlib" "-lunwind" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libcfg_if-*,liblibc-*}.rlib" "-lc" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-L" "/tmp/rustcyZGHdb/raw-dylibs" "-Wl,-Bdynamic" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-nostartfiles" "-L" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/build/openssl-sys-de18b4773669f85c/out/openssl-build/install/lib" "-L" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/build/libdeflate-sys-2a91519bc6c233d7/out/lib" "-L" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/build/hts-sys-db535e565f565b1f/out" "-L" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/build/bzip2-sys-023807fe4f4f204f/out/lib" "-L" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/build/curl-sys-98acc1d5dda39eec/out/build" "-L" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/build/libz-sys-414a9a392d9b9055/out/build" "-L" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/build/lzma-sys-3218ffe59006a7e2/out" "-L" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained" "-L" "/lib/rustlib/x86_64-unknown-linux-musl/lib" "-o" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/genvcf-5b5c8b43d5c6dd0d" "-Wl,--gc-sections" "-static-pie" "-Wl,-z,relro,-z,now" "-Wl,-O1" "-nodefaultlibs" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtendS.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtn.o" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: /usr/bin/ld: /opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libgetrandom-eb094ccb174bfee1.rlib(getrandom-eb094ccb174bfee1.getrandom.cfd209a9158abe73-cgu.0.rcgu.o): in function `getrandom::util_libc::open_readonly': [INFO] [stdout] /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/getrandom-0.1.15/src/util_libc.rs:112:(.text._ZN9getrandom9util_libc13open_readonly17ha13a5db187d3c4c5E+0x1b): undefined reference to `open64' [INFO] [stdout] collect2: error: ld returned 1 exit status [INFO] [stdout] [INFO] [stdout] = note: some `extern` functions couldn't be found; some native libraries may need to be installed or have their path specified [INFO] [stdout] = note: use the `-l` flag to specify native libraries to link [INFO] [stdout] = note: use the `cargo:rustc-link-lib` directive to specify the native libraries to link with Cargo (see https://doc.rust-lang.org/cargo/reference/build-scripts.html#rustc-link-lib) [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `simsplice` (bin "genvcf") due to 1 previous error; 2 warnings emitted [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stdout] error: linking with `cc` failed: exit status: 1 [INFO] [stdout] | [INFO] [stdout] = note: "cc" "-m64" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/rcrt1.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crti.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtbeginS.o" "/tmp/rustc4vVI0l/symbols.o" "<17 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/{libeyre-af19f905499d6ac3.rlib,libindenter-548594595a193dcd.rlib,libslog_term-31a3e7716dacce6a.rlib,libterm-3d74d0e99eb8d31d.rlib,libdirs-23d6c93cf0bf386b.rlib,libdirs_sys-250b07ca61d1d288.rlib,libchrono-b0f50d5e176965a0.rlib,libtime-9c62b4aef78af646.rlib,libslog-a0fdbfde5ad62a2f.rlib,libbio-315cce322df1ccc3.rlib,libstrum-c219764435e13f15.rlib,libcsv-85abf34dd7d41f7a.rlib,libryu-bfa5bb3521d3ad0b.rlib,libcsv_core-b0e0d31a936522ff.rlib,libbstr-8ccf0a0d139bda49.rlib,libregex_automata-95315d764b18ce1a.rlib,libbytecount-ebc90c79858d6095.rlib,libtriple_accel-77f75c4bdd914e55.rlib,libitertools_num-8f875402f8c79f8d.rlib,libenum_map-bf7fbe09c00f1d06.rlib,libarray_macro-14e1249ffb300f00.rlib,libstatrs-3f86ad05713dab10.rlib,libordered_float-9ab609a3f84430b7.rlib,libndarray-893abf234f07155e.rlib,libmatrixmultiply-51f13cc57b9ce9b8.rlib,libnum_complex-39a59651a32427e1.rlib,librawpointer-548a18c35990a353.rlib,libmultimap-27dd13e530789db8.rlib,libnum_integer-bd305ed477208402.rlib,libbv-89a1bb8c289d138c.rlib,libbit_set-6388fc89b02166a2.rlib,libbit_vec-3937003392b48a8f.rlib,libfxhash-7da46b5437140cfb.rlib,libpetgraph-09b28ec2e468ca1f.rlib,libindexmap-0c480e6ccdd3553b.rlib,libhashbrown-8929fb89e66d7989.rlib,libfixedbitset-b0510dd7fe90d1a8.rlib,libsnafu-efbc03af0a917ab7.rlib,libdoc_comment-f65014f8d7363cec.rlib,libapprox-87866fd1e7d3bdae.rlib,libnum_traits-1eefce9091b81b8d.rlib,libbigtools-9a75cae400656403.rlib,libattohttpc-e6ca684beedccaee.rlib,libnative_tls-47290bfec5b1506e.rlib,libopenssl_probe-29b77d0c54ab5e8e.rlib,libopenssl-3d9f8b8de7b7a43f.rlib,libforeign_types-8b7443250577384f.rlib,libforeign_types_shared-b16b2271e1423afc.rlib,liblog-a660e2cee355b9df.rlib,libwildmatch-9b5a3d952c2f2812.rlib,libhttp-be0169ebe84d67f7.rlib,libitoa-1be5e5afec42f6a8.rlib,libbytes-4dff1cbe7b01a3dd.rlib,libfnv-0f5ce85fd8372c46.rlib,libtempfile-bd67be25fbffd3a8.rlib,librand-6463b7f669d3d443.rlib,librand_chacha-40e19e357386bda7.rlib,libppv_lite86-7a089fa3b5ff621d.rlib,librand_core-d3fd96e9cccb5eb5.rlib,libgetrandom-eb094ccb174bfee1.rlib,libremove_dir_all-66c5ac64d41c3ac8.rlib,libbincode-0c73416622dcfb18.rlib,libparking_lot-36d5b3e7f69088f8.rlib,libparking_lot_core-05292bf3339ae76a.rlib,libsmallvec-d03d456a303dbe0c.rlib,libcfg_if-1115355c16bea3ba.rlib,liblock_api-8a35a95e78413c0a.rlib,libscopeguard-69ef0bcbf29b82dd.rlib,libinstant-ebf01062a4e72b6b.rlib,libcrossbeam_channel-ab79ec65a9512f52.rlib,libcrossbeam_utils-f137b3b82b96870d.rlib,libitertools-9d2bcda404b9c9fa.rlib,libeither-6fb8c1333c5e3189.rlib,libfutures-7e574dfdba7a73ff.rlib,libfutures_executor-4c969e5623a4d009.rlib,libnum_cpus-52da304380d3a1bb.rlib,libfutures_util-9e5290276a059a7a.rlib,libfutures_io-20492082d552343d.rlib,libslab-46b14877dc83eb03.rlib,libfutures_channel-8ffb57c726f8ed95.rlib,libpin_project-a6c87614eabf8845.rlib,libfutures_sink-932387cff21047e0.rlib,libfutures_task-ac8274787b08bfce.rlib,libonce_cell-cbd342ccb7c12e7b.rlib,libpin_utils-99c3d5adbb0b5bc1.rlib,libfutures_core-936b10ac0ca6eaf3.rlib,liblibdeflater-d2940b84eb73a3f3.rlib,liblibdeflate_sys-72c2853061eb6621.rlib,libbyteordered-19c6f9cd044881a9.rlib,libbyteorder-457eb52d37cb6da8.rlib,libflate2-3b0980ed7e22b201.rlib,libminiz_oxide-896fd7f59e7c31b5.rlib,libadler-6ec65416fcdcbbab.rlib,libcrc32fast-a9e1d89fa5367df1.rlib,libcfg_if-99870fc7468d9ed1.rlib,librust_htslib-96aeb5860441cded.rlib,libhts_sys-6ccfb78d9ff46b1d.rlib,libcurl_sys-70ef4cc40bb4e8cf.rlib,libopenssl_sys-6eae77e072d25574.rlib,liblzma_sys-5f9e8983605d757e.rlib,libbzip2_sys-c9638aaf72ff2953.rlib,liblibz_sys-3dfbd256d4b754aa.rlib,libthiserror-4578825978fc2430.rlib,libieee754-f387c6e4da54f38a.rlib,liburl-deca29522bf8cbf9.rlib,libidna-2b4f3492330173b6.rlib,libunicode_normalization-40936a2dae71fa38.rlib,libtinyvec-421956fa0423cd02.rlib,libtinyvec_macros-73d00b88c4a829da.rlib,libunicode_bidi-be338ca12d9afcbe.rlib,libform_urlencoded-f53c0a0cd86a37b9.rlib,libpercent_encoding-951eb4d810ceb450.rlib,libmatches-f5b940c1fef9c9ee.rlib,libbio_types-70b2070155266f89.rlib,libquick_error-8be02a70a3eec9cb.rlib,libregex-b4c3fb9d2a2b3cdd.rlib,libthread_local-b1cda5035fd2625e.rlib,libregex_syntax-7cbc41c7c61b1831.rlib,libaho_corasick-58ebd03c4ff25c9c.rlib,libmemchr-ead0ebeaaa1b6ee3.rlib,liblinear_map-fd4d8d105ce03692.rlib,libnewtype_derive-9d04e4ea92b61984.rlib,libcustom_derive-912717f7d88a8a0f.rlib,libstructopt-92ffd6fa14e26b35.rlib,liblazy_static-0abb46da822a0370.rlib,libclap-f5c65aa0323616d8.rlib,libvec_map-cfa01decd850c512.rlib,libserde-e8ab74133f859392.rlib,libtextwrap-f6f646a276d11748.rlib,libunicode_width-01eb2561cf3e5572.rlib,libstrsim-f87ffb4c17952fef.rlib,libbitflags-69d4b4f1727ccf8a.rlib,libatty-c8e9744481d5305e.rlib,liblibc-25b7f59a9843bac4.rlib,libansi_term-dbbf49b53c436b8c.rlib}.rlib" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*}.rlib" "-lunwind" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{libcfg_if-*,liblibc-*}.rlib" "-lc" "/lib/rustlib/x86_64-unknown-linux-musl/lib/{librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-L" "/tmp/rustc4vVI0l/raw-dylibs" "-Wl,-Bdynamic" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-nostartfiles" "-L" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/build/openssl-sys-de18b4773669f85c/out/openssl-build/install/lib" "-L" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/build/libdeflate-sys-2a91519bc6c233d7/out/lib" "-L" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/build/hts-sys-db535e565f565b1f/out" "-L" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/build/bzip2-sys-023807fe4f4f204f/out/lib" "-L" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/build/curl-sys-98acc1d5dda39eec/out/build" "-L" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/build/libz-sys-414a9a392d9b9055/out/build" "-L" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/build/lzma-sys-3218ffe59006a7e2/out" "-L" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained" "-L" "/lib/rustlib/x86_64-unknown-linux-musl/lib" "-o" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/simsplice-3b4cb42077088317" "-Wl,--gc-sections" "-static-pie" "-Wl,-z,relro,-z,now" "-Wl,-O1" "-nodefaultlibs" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtendS.o" "/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtn.o" [INFO] [stdout] = note: some arguments are omitted. use `--verbose` to show all linker arguments [INFO] [stdout] = note: /usr/bin/ld: /opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libgetrandom-eb094ccb174bfee1.rlib(getrandom-eb094ccb174bfee1.getrandom.cfd209a9158abe73-cgu.0.rcgu.o): in function `getrandom::util_libc::open_readonly': [INFO] [stdout] /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/getrandom-0.1.15/src/util_libc.rs:112:(.text._ZN9getrandom9util_libc13open_readonly17ha13a5db187d3c4c5E+0x1b): undefined reference to `open64' [INFO] [stdout] collect2: error: ld returned 1 exit status [INFO] [stdout] [INFO] [stdout] = note: some `extern` functions couldn't be found; some native libraries may need to be installed or have their path specified [INFO] [stdout] = note: use the `-l` flag to specify native libraries to link [INFO] [stdout] = note: use the `cargo:rustc-link-lib` directive to specify the native libraries to link with Cargo (see https://doc.rust-lang.org/cargo/reference/build-scripts.html#rustc-link-lib) [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `simsplice` (bin "simsplice") due to 1 previous error; 2 warnings emitted [INFO] running `Command { std: "docker" "inspect" "811c0d1f489b2e103d1926365ce2989195403ed61eb2d2e750254e58a893232b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "811c0d1f489b2e103d1926365ce2989195403ed61eb2d2e750254e58a893232b", kill_on_drop: false }` [INFO] [stdout] 811c0d1f489b2e103d1926365ce2989195403ed61eb2d2e750254e58a893232b