[INFO] cloning repository https://github.com/chanzuckerberg/idseq-dedup
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/chanzuckerberg/idseq-dedup" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchanzuckerberg%2Fidseq-dedup", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchanzuckerberg%2Fidseq-dedup'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 65f04c4cce9518e6f93837a700bd843f6745fb55
[INFO] testing chanzuckerberg/idseq-dedup against try#c066bf6804adc55193b71afdff6a56922f4a8689+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_in_2025-retry-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fchanzuckerberg%2Fidseq-dedup" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/chanzuckerberg/idseq-dedup
[INFO] finished tweaking git repo https://github.com/chanzuckerberg/idseq-dedup
[INFO] tweaked toml for git repo https://github.com/chanzuckerberg/idseq-dedup written to /workspace/builds/worker-6-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/chanzuckerberg/idseq-dedup on toolchain c066bf6804adc55193b71afdff6a56922f4a8689
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c066bf6804adc55193b71afdff6a56922f4a8689" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/chanzuckerberg/idseq-dedup already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+c066bf6804adc55193b71afdff6a56922f4a8689" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+c066bf6804adc55193b71afdff6a56922f4a8689" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] e874fa105be5e9cc565a942508bc201fd7aa155d7ed700a56845a7001640ee0f
[INFO] running `Command { std: "docker" "start" "-a" "e874fa105be5e9cc565a942508bc201fd7aa155d7ed700a56845a7001640ee0f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e874fa105be5e9cc565a942508bc201fd7aa155d7ed700a56845a7001640ee0f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e874fa105be5e9cc565a942508bc201fd7aa155d7ed700a56845a7001640ee0f", kill_on_drop: false }`
[INFO] [stdout] e874fa105be5e9cc565a942508bc201fd7aa155d7ed700a56845a7001640ee0f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+c066bf6804adc55193b71afdff6a56922f4a8689" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] 028910e29215fd893095341e96c561217599747ef132bb477a84ce04c1935b3b
[INFO] running `Command { std: "docker" "start" "-a" "028910e29215fd893095341e96c561217599747ef132bb477a84ce04c1935b3b", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.24
[INFO] [stderr]    Compiling unicode-xid v0.2.1
[INFO] [stderr]    Compiling syn v1.0.42
[INFO] [stderr]    Compiling autocfg v1.0.1
[INFO] [stderr]    Compiling serde_derive v1.0.116
[INFO] [stderr]    Compiling serde v1.0.116
[INFO] [stderr]    Compiling libc v0.2.78
[INFO] [stderr]    Compiling memchr v2.3.3
[INFO] [stderr]    Compiling byteorder v1.3.4
[INFO] [stderr]    Compiling getrandom v0.1.15
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling cfg-if v0.1.10
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling ryu v1.0.5
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling ppv-lite86 v0.2.9
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling thread_local v1.0.1
[INFO] [stderr]    Compiling ndarray v0.13.1
[INFO] [stderr]    Compiling regex-syntax v0.6.18
[INFO] [stderr]    Compiling unicode-segmentation v1.6.0
[INFO] [stderr]    Compiling bitflags v1.2.1
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling hashbrown v0.9.1
[INFO] [stderr]    Compiling matrixmultiply v0.2.3
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling aho-corasick v0.7.13
[INFO] [stderr]    Compiling heck v0.3.1
[INFO] [stderr]    Compiling csv-core v0.1.10
[INFO] [stderr]    Compiling array-macro v1.0.5
[INFO] [stderr]    Compiling num-traits v0.2.12
[INFO] [stderr]    Compiling indexmap v1.6.0
[INFO] [stderr]    Compiling num-integer v0.1.43
[INFO] [stderr]    Compiling num-complex v0.2.4
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling itoa v0.4.6
[INFO] [stderr]    Compiling either v1.6.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling unicode-width v0.1.8
[INFO] [stderr]    Compiling quote v1.0.7
[INFO] [stderr]    Compiling regex-automata v0.1.9
[INFO] [stderr]    Compiling bit-vec v0.6.2
[INFO] [stderr]    Compiling fixedbitset v0.2.0
[INFO] [stderr]    Compiling bio v0.32.0
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling itertools v0.9.0
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling ansi_term v0.11.0
[INFO] [stderr]    Compiling fnv v1.0.7
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling bytecount v0.6.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling triple_accel v0.3.4
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling strum v0.18.0
[INFO] [stderr]    Compiling bit-set v0.5.2
[INFO] [stderr]    Compiling simple-error v0.2.2
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling petgraph v0.5.1
[INFO] [stderr]    Compiling ordered-float v1.1.0
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling approx v0.3.2
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling regex v1.3.9
[INFO] [stderr]    Compiling statrs v0.12.0
[INFO] [stderr]    Compiling derive-new v0.5.8
[INFO] [stderr]    Compiling enum-map-derive v0.4.3
[INFO] [stderr]    Compiling snafu-derive v0.6.9
[INFO] [stderr]    Compiling getset v0.0.9
[INFO] [stderr]    Compiling strum_macros v0.18.0
[INFO] [stderr]    Compiling enum-map v0.6.3
[INFO] [stderr]    Compiling snafu v0.6.9
[INFO] [stderr]    Compiling bstr v0.2.13
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling bio-types v0.7.0
[INFO] [stderr]    Compiling multimap v0.8.2
[INFO] [stderr]    Compiling clap v2.33.3
[INFO] [stderr]    Compiling csv v1.1.3
[INFO] [stderr]    Compiling czid-dedup v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]   --> src/clusters.rs:29:18
[INFO] [stdout]    |
[INFO] [stdout] 29 |             Some(mut cluster) => {
[INFO] [stdout]    |                  ----^^^^^^^
[INFO] [stdout]    |                  |
[INFO] [stdout]    |                  help: remove this `mut`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 31.55s
[INFO] running `Command { std: "docker" "inspect" "028910e29215fd893095341e96c561217599747ef132bb477a84ce04c1935b3b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "028910e29215fd893095341e96c561217599747ef132bb477a84ce04c1935b3b", kill_on_drop: false }`
[INFO] [stdout] 028910e29215fd893095341e96c561217599747ef132bb477a84ce04c1935b3b
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+c066bf6804adc55193b71afdff6a56922f4a8689" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }`
[INFO] [stdout] f31b25452c8ac9ca9c0211a1ea5652707b263f86e82e6e69d3f15b25d966f269
[INFO] running `Command { std: "docker" "start" "-a" "f31b25452c8ac9ca9c0211a1ea5652707b263f86e82e6e69d3f15b25d966f269", kill_on_drop: false }`
[INFO] [stderr]    Compiling remove_dir_all v0.5.3
[INFO] [stderr]    Compiling tempfile v3.1.0
[INFO] [stderr]    Compiling czid-dedup v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]   --> src/clusters.rs:29:18
[INFO] [stdout]    |
[INFO] [stdout] 29 |             Some(mut cluster) => {
[INFO] [stdout]    |                  ----^^^^^^^
[INFO] [stdout]    |                  |
[INFO] [stdout]    |                  help: remove this `mut`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_mut)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] error: linking with `cc` failed: exit status: 1
[INFO] [stdout]   |
[INFO] [stdout]   = note:  "cc" "-m64" "<sysroot>/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/rcrt1.o" "<sysroot>/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crti.o" "<sysroot>/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtbeginS.o" "/tmp/rustcbpyZGV/symbols.o" "<10 object files omitted>" "-Wl,--as-needed" "-Wl,-Bstatic" "<sysroot>/lib/rustlib/x86_64-unknown-linux-musl/lib/{libtest-*,libgetopts-*,libunicode_width-*,librustc_std_workspace_std-*}.rlib" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/{libtempfile-8665818737b2a535.rlib,libremove_dir_all-4e221c62d36b2749.rlib,libsimple_error-cd6f2ac27f408b73.rlib,libclap-545ae4899c6b7984.rlib,libtextwrap-8f512d08ba4810ae.rlib,libunicode_width-a8c49d31449f9404.rlib,libstrsim-b8b77d7a062bc77b.rlib,libbitflags-561a4f1321538a32.rlib,libatty-c81063e59ec6160e.rlib,libansi_term-ff0b7d01d18bd931.rlib,libbio-9b4618819607f590.rlib,libstrum-5019fda0e650a0ac.rlib,libcsv-07a65d7082448a1b.rlib,libryu-af883cd9b444a782.rlib,libitoa-a59540a3a09fb750.rlib,libcsv_core-7f119a27c4786805.rlib,libbstr-19d2cb0d978613aa.rlib,libregex_automata-98fff21112fa756f.rlib,libbytecount-50bf2b2e6bbbb8b5.rlib,libtriple_accel-3f9da5520f5e7a4d.rlib,libitertools_num-54f64e908254b9ca.rlib,libenum_map-98e009b50cf2d692.rlib,libarray_macro-0b49b9bf81666808.rlib,libstatrs-7b3f81a167f6e190.rlib,librand-f69a4a5942354453.rlib,librand_chacha-0b117cffda01ab2e.rlib,libppv_lite86-fe4748cb9a4a903e.rlib,librand_core-1124a2ab272ea31b.rlib,libgetrandom-d2b13717cecedd63.rlib,liblibc-94f9923c62dd7e24.rlib,libcfg_if-2d17986ae484e939.rlib,libordered_float-f4b6d3f81ac3f1cd.rlib,libndarray-6b6febbc122a449f.rlib,libmatrixmultiply-482b47bad5f02851.rlib,libnum_complex-24dae4f9549d2ccc.rlib,librawpointer-ee8696fe85e6dce4.rlib,libmultimap-a394d959bfcb3ce4.rlib,libitertools-e8b88e4ee28af446.rlib,libeither-e8a0ef7222037a64.rlib,libnum_integer-3942b44275cea23f.rlib,libbv-f64dca6ab0e54bb8.rlib,libvec_map-9fbde478eb2ea45e.rlib,libbit_set-323d2533ed8eec84.rlib,libbit_vec-0097a1ca6de5c5b5.rlib,libbio_types-7b3a8b33629f80d1.rlib,libserde-77b4d6925fb3593b.rlib,libregex-430e00fca47259de.rlib,libthread_local-c6b88a4b7954c5cd.rlib,libregex_syntax-cb353ff079726287.rlib,libaho_corasick-61bf4caab8600cce.rlib,libmemchr-66f21ea766679294.rlib,libquick_error-022321fe562bcedb.rlib,libfxhash-fb1b8bdd7d9c2822.rlib,libbyteorder-549def2b2525ef52.rlib,libpetgraph-8deb4b4aa6ed765b.rlib,libindexmap-9de7c312a45aff79.rlib,libhashbrown-aed633c8184090a0.rlib,libfixedbitset-9882e188145b7e24.rlib,libsnafu-8f2d449855c316a0.rlib,libdoc_comment-371febfbc0981078.rlib,libnewtype_derive-f91eed88f8acaf26.rlib,liblazy_static-4b136fc9bfbd2c4b.rlib,libcustom_derive-d11a0801595e3fc6.rlib,libapprox-c21c349a533c82db.rlib,libnum_traits-e709234137b77527.rlib}.rlib" "<sysroot>/lib/rustlib/x86_64-unknown-linux-musl/lib/{libstd-*,libpanic_unwind-*,libobject-*,libmemchr-*,libaddr2line-*,libgimli-*,librustc_demangle-*,libstd_detect-*,libhashbrown-*,librustc_std_workspace_alloc-*,libminiz_oxide-*,libadler2-*,libunwind-*}.rlib" "-lunwind" "<sysroot>/lib/rustlib/x86_64-unknown-linux-musl/lib/{libcfg_if-*,liblibc-*}.rlib" "-lc" "<sysroot>/lib/rustlib/x86_64-unknown-linux-musl/lib/{librustc_std_workspace_core-*,liballoc-*,libcore-*,libcompiler_builtins-*}.rlib" "-L" "/tmp/rustcbpyZGV/raw-dylibs" "-Wl,-Bdynamic" "-Wl,--eh-frame-hdr" "-Wl,-z,noexecstack" "-nostartfiles" "-L" "<sysroot>/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained" "-L" "<sysroot>/lib/rustlib/x86_64-unknown-linux-musl/lib" "-o" "/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/czid_dedup-ddf8c582b4e6e578" "-Wl,--gc-sections" "-static-pie" "-Wl,-z,relro,-z,now" "-nodefaultlibs" "<sysroot>/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtendS.o" "<sysroot>/lib/rustlib/x86_64-unknown-linux-musl/lib/self-contained/crtn.o"
[INFO] [stdout]   = note: some arguments are omitted. use `--verbose` to show all linker arguments
[INFO] [stdout]   = note: /usr/bin/ld: /opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/libgetrandom-d2b13717cecedd63.rlib(getrandom-d2b13717cecedd63.getrandom.178a3744392421e1-cgu.0.rcgu.o): in function `getrandom::util_libc::open_readonly':
[INFO] [stdout]           /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/getrandom-0.1.15/src/util_libc.rs:112:(.text._ZN9getrandom9util_libc13open_readonly17hba75a861b3472e90E+0x79): undefined reference to `open64'
[INFO] [stdout]           collect2: error: ld returned 1 exit status
[INFO] [stdout]           
[INFO] [stdout]   = note: some `extern` functions couldn't be found; some native libraries may need to be installed or have their path specified
[INFO] [stdout]   = note: use the `-l` flag to specify native libraries to link
[INFO] [stdout]   = note: use the `cargo:rustc-link-lib` directive to specify the native libraries to link with Cargo (see https://doc.rust-lang.org/cargo/reference/build-scripts.html#rustc-link-lib)
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr] error: could not compile `czid-dedup` (bin "czid-dedup" test) due to 1 previous error; 1 warning emitted
[INFO] running `Command { std: "docker" "inspect" "f31b25452c8ac9ca9c0211a1ea5652707b263f86e82e6e69d3f15b25d966f269", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f31b25452c8ac9ca9c0211a1ea5652707b263f86e82e6e69d3f15b25d966f269", kill_on_drop: false }`
[INFO] [stdout] f31b25452c8ac9ca9c0211a1ea5652707b263f86e82e6e69d3f15b25d966f269