[INFO] cloning repository https://github.com/ntBre/rdkit-rs [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ntBre/rdkit-rs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FntBre%2Frdkit-rs", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FntBre%2Frdkit-rs'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] fdc320774d101f4cc84f964bef9547af88f5d2c9 [INFO] testing ntBre/rdkit-rs/fdc320774d101f4cc84f964bef9547af88f5d2c9 against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_in_2025-retry-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FntBre%2Frdkit-rs" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/ntBre/rdkit-rs [INFO] finished tweaking git repo https://github.com/ntBre/rdkit-rs [INFO] tweaked toml for git repo https://github.com/ntBre/rdkit-rs written to /workspace/builds/worker-7-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/ntBre/rdkit-rs on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/ntBre/rdkit-rs already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating git repository `https://github.com/ntBre/rdkit-sys` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 4cc24ea6bce4568e580b0767d731365758c99eceaa5f87eeb898f7a6edcbccde [INFO] running `Command { std: "docker" "start" "-a" "4cc24ea6bce4568e580b0767d731365758c99eceaa5f87eeb898f7a6edcbccde", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "4cc24ea6bce4568e580b0767d731365758c99eceaa5f87eeb898f7a6edcbccde", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4cc24ea6bce4568e580b0767d731365758c99eceaa5f87eeb898f7a6edcbccde", kill_on_drop: false }` [INFO] [stdout] 4cc24ea6bce4568e580b0767d731365758c99eceaa5f87eeb898f7a6edcbccde [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 4049c505431cf065d6dfc65acb6da1abaf92ad2a493dc4956f0d1ffacd7f5d53 [INFO] running `Command { std: "docker" "start" "-a" "4049c505431cf065d6dfc65acb6da1abaf92ad2a493dc4956f0d1ffacd7f5d53", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.79 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Compiling libc v0.2.153 [INFO] [stderr] Compiling prettyplease v0.2.16 [INFO] [stderr] Compiling rustix v0.38.31 [INFO] [stderr] Compiling bitflags v2.6.0 [INFO] [stderr] Compiling regex-syntax v0.8.2 [INFO] [stderr] Compiling either v1.10.0 [INFO] [stderr] Compiling memchr v2.7.1 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling linux-raw-sys v0.4.13 [INFO] [stderr] Compiling minimal-lexical v0.2.1 [INFO] [stderr] Compiling home v0.5.9 [INFO] [stderr] Compiling bindgen v0.69.4 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling libloading v0.8.3 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Compiling log v0.4.22 [INFO] [stderr] Compiling rustc-hash v1.1.0 [INFO] [stderr] Compiling lazycell v1.3.0 [INFO] [stderr] Compiling serde v1.0.204 [INFO] [stderr] Compiling serde_json v1.0.122 [INFO] [stderr] Compiling rdkit-rs v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Compiling itoa v1.0.10 [INFO] [stderr] Compiling ryu v1.0.17 [INFO] [stderr] Compiling clang-sys v1.7.0 [INFO] [stderr] Compiling regex-automata v0.4.6 [INFO] [stderr] Compiling quote v1.0.35 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling syn v2.0.52 [INFO] [stderr] Compiling which v4.4.2 [INFO] [stderr] Compiling regex v1.10.3 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Compiling serde_derive v1.0.204 [INFO] [stderr] Compiling rdkit-sys v0.1.0 (https://github.com/ntBre/rdkit-sys#dc5d75ea) [INFO] [stderr] error: failed to run custom build command for `rdkit-sys v0.1.0 (https://github.com/ntBre/rdkit-sys#dc5d75ea)` [INFO] [stderr] [INFO] [stderr] Caused by: [INFO] [stderr] process didn't exit successfully: `/opt/rustwide/target/debug/build/rdkit-sys-fe72b2e654dc600f/build-script-build` (exit status: 101) [INFO] [stderr] --- stdout [INFO] [stderr] cargo:rerun-if-changed=include/shim.h [INFO] [stderr] cargo:rerun-if-changed=include/shim.cpp [INFO] [stderr] cargo:rerun-if-changed=include/Makefile [INFO] [stderr] cargo:rerun-if-changed=wrapper.h [INFO] [stderr] cargo:rerun-if-env-changed=RDROOT [INFO] [stderr] [INFO] [stderr] --- stderr [INFO] [stderr] [INFO] [stderr] thread 'main' panicked at /opt/rustwide/cargo-home/git/checkouts/rdkit-sys-f8b7de60bf7e6bc2/dc5d75e/build.rs:15:9: [INFO] [stderr] rdkit-sys: RDROOT must be set in the environment [INFO] [stderr] stack backtrace: [INFO] [stderr] 0: 0x59a251a4e512 - std::backtrace_rs::backtrace::libunwind::trace::h7c95ef939f65c294 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/../../backtrace/src/backtrace/libunwind.rs:117:9 [INFO] [stderr] 1: 0x59a251a4e512 - std::backtrace_rs::backtrace::trace_unsynchronized::h32c948083968be8c [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/../../backtrace/src/backtrace/mod.rs:66:14 [INFO] [stderr] 2: 0x59a251a4e512 - std::sys::backtrace::_print_fmt::hbce1ec88d06e088c [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:66:9 [INFO] [stderr] 3: 0x59a251a4e512 - ::fmt::hb9fc0e74cd3e2ce7 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:39:26 [INFO] [stderr] 4: 0x59a251a75093 - core::fmt::rt::Argument::fmt::h6807405d250eb341 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/fmt/rt.rs:173:76 [INFO] [stderr] 5: 0x59a251a75093 - core::fmt::write::h44c4c28224d1d425 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/fmt/mod.rs:1460:25 [INFO] [stderr] 6: 0x59a251a4b573 - std::io::default_write_fmt::h2bbef4d99fdfa1fb [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/io/mod.rs:639:11 [INFO] [stderr] 7: 0x59a251a4b573 - std::io::Write::write_fmt::h7c137d8faa040f47 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/io/mod.rs:1954:13 [INFO] [stderr] 8: 0x59a251a4e362 - std::sys::backtrace::BacktraceLock::print::hdd765023e0895687 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:42:9 [INFO] [stderr] 9: 0x59a251a4fa82 - std::panicking::default_hook::{{closure}}::h3703709d08ff9881 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:300:27 [INFO] [stderr] 10: 0x59a251a4f885 - std::panicking::default_hook::h52db45a3301fd26f [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:327:9 [INFO] [stderr] 11: 0x59a251a50492 - std::panicking::rust_panic_with_hook::h6c4d7d69d053bb09 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:833:13 [INFO] [stderr] 12: 0x59a251a501f6 - std::panicking::begin_panic_handler::{{closure}}::h7b56674cf0518b4b [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:699:13 [INFO] [stderr] 13: 0x59a251a4ea09 - std::sys::backtrace::__rust_end_short_backtrace::h3266312f35a9262a [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:168:18 [INFO] [stderr] 14: 0x59a251a4febd - __rustc[f4ffc7196a45a630]::rust_begin_unwind [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:697:5 [INFO] [stderr] 15: 0x59a251a73420 - core::panicking::panic_fmt::h42f13c80076c805d [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/panicking.rs:75:14 [INFO] [stderr] 16: 0x59a251455570 - build_script_build::main::h87d45a9dfcb6eedd [INFO] [stderr] at /opt/rustwide/cargo-home/git/checkouts/rdkit-sys-f8b7de60bf7e6bc2/dc5d75e/build.rs:15:9 [INFO] [stderr] 17: 0x59a251451c7b - core::ops::function::FnOnce::call_once::h43fa22333d0cec24 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/ops/function.rs:250:5 [INFO] [stderr] 18: 0x59a25145182e - std::sys::backtrace::__rust_begin_short_backtrace::hce645784c843cb7a [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/sys/backtrace.rs:152:18 [INFO] [stderr] 19: 0x59a251451801 - std::rt::lang_start::{{closure}}::h7d1761e6ad949ea2 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/rt.rs:206:18 [INFO] [stderr] 20: 0x59a251a46210 - core::ops::function::impls:: for &F>::call_once::h776d28ad5d8e3065 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/core/src/ops/function.rs:284:21 [INFO] [stderr] 21: 0x59a251a46210 - std::panicking::catch_unwind::do_call::hc52b7f8762002282 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:589:40 [INFO] [stderr] 22: 0x59a251a46210 - std::panicking::catch_unwind::h65ae6675cb87c293 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:552:19 [INFO] [stderr] 23: 0x59a251a46210 - std::panic::catch_unwind::h4bf88f8de30a831e [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panic.rs:359:14 [INFO] [stderr] 24: 0x59a251a46210 - std::rt::lang_start_internal::{{closure}}::he18cde089aa4ecf1 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/rt.rs:175:24 [INFO] [stderr] 25: 0x59a251a46210 - std::panicking::catch_unwind::do_call::h8d614f4790efaa4f [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:589:40 [INFO] [stderr] 26: 0x59a251a46210 - std::panicking::catch_unwind::he616f21a5745eff4 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panicking.rs:552:19 [INFO] [stderr] 27: 0x59a251a46210 - std::panic::catch_unwind::ha12dd71f2a653c0c [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/panic.rs:359:14 [INFO] [stderr] 28: 0x59a251a46210 - std::rt::lang_start_internal::hacfd5a6cee565422 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/rt.rs:171:5 [INFO] [stderr] 29: 0x59a2514517e7 - std::rt::lang_start::h316e076410e676d2 [INFO] [stderr] at /rustc/8de4c7234dd9b97c9d76b58671343fdbbc9a433e/library/std/src/rt.rs:205:5 [INFO] [stderr] 30: 0x59a2514555be - main [INFO] [stderr] 31: 0x70538a10a1ca - [INFO] [stderr] 32: 0x70538a10a28b - __libc_start_main [INFO] [stderr] 33: 0x59a2514509e5 - _start [INFO] [stderr] 34: 0x0 - [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] running `Command { std: "docker" "inspect" "4049c505431cf065d6dfc65acb6da1abaf92ad2a493dc4956f0d1ffacd7f5d53", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4049c505431cf065d6dfc65acb6da1abaf92ad2a493dc4956f0d1ffacd7f5d53", kill_on_drop: false }` [INFO] [stdout] 4049c505431cf065d6dfc65acb6da1abaf92ad2a493dc4956f0d1ffacd7f5d53