[INFO] cloning repository https://github.com/nbalcarc/genome-tree [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/nbalcarc/genome-tree" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnbalcarc%2Fgenome-tree", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnbalcarc%2Fgenome-tree'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] b0c3580f109750af8fc4e3fd5ad9627f646fc633 [INFO] testing nbalcarc/genome-tree against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_in_2025-retry-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnbalcarc%2Fgenome-tree" "/workspace/builds/worker-2-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/nbalcarc/genome-tree [INFO] finished tweaking git repo https://github.com/nbalcarc/genome-tree [INFO] tweaked toml for git repo https://github.com/nbalcarc/genome-tree written to /workspace/builds/worker-2-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/nbalcarc/genome-tree on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/nbalcarc/genome-tree already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 2ad43437c05736da69b1440a05a59095ab4d62bcefdf4b8383201ae6357159c9 [INFO] running `Command { std: "docker" "start" "-a" "2ad43437c05736da69b1440a05a59095ab4d62bcefdf4b8383201ae6357159c9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "2ad43437c05736da69b1440a05a59095ab4d62bcefdf4b8383201ae6357159c9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "2ad43437c05736da69b1440a05a59095ab4d62bcefdf4b8383201ae6357159c9", kill_on_drop: false }` [INFO] [stdout] 2ad43437c05736da69b1440a05a59095ab4d62bcefdf4b8383201ae6357159c9 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] b06955a98b2d6d2b2060e68609e050908d7f731a80710032df4af96dd2f7e180 [INFO] running `Command { std: "docker" "start" "-a" "b06955a98b2d6d2b2060e68609e050908d7f731a80710032df4af96dd2f7e180", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.138 [INFO] [stderr] Compiling ppv-lite86 v0.2.17 [INFO] [stderr] Compiling getrandom v0.2.8 [INFO] [stderr] Compiling rand_core v0.6.4 [INFO] [stderr] Compiling rand_chacha v0.3.1 [INFO] [stderr] Compiling rand v0.8.5 [INFO] [stderr] Compiling genome-tree v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `PhyloTree` [INFO] [stdout] --> src/main.rs:1:22 [INFO] [stdout] | [INFO] [stdout] 1 | use crate::structs::{PhyloTree, Genome}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `os::unix::prelude::FileExt` and `path::Path` [INFO] [stdout] --> src/main.rs:2:11 [INFO] [stdout] | [INFO] [stdout] 2 | use std::{path::Path, env, fs::{self, File}, os::unix::prelude::FileExt, io::Write}; [INFO] [stdout] | ^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/structs.rs:341:33 [INFO] [stdout] | [INFO] [stdout] 341 | ... let mut cur_genome = &mut f_original[i]; [INFO] [stdout] | ----^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 4.25s [INFO] running `Command { std: "docker" "inspect" "b06955a98b2d6d2b2060e68609e050908d7f731a80710032df4af96dd2f7e180", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "b06955a98b2d6d2b2060e68609e050908d7f731a80710032df4af96dd2f7e180", kill_on_drop: false }` [INFO] [stdout] b06955a98b2d6d2b2060e68609e050908d7f731a80710032df4af96dd2f7e180 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 7dffc956e04bafea1cded941f725cf1b9d2197bd67367e472556a02c01e5410d [INFO] running `Command { std: "docker" "start" "-a" "7dffc956e04bafea1cded941f725cf1b9d2197bd67367e472556a02c01e5410d", kill_on_drop: false }` [INFO] [stderr] Compiling genome-tree v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unused import: `PhyloTree` [INFO] [stdout] --> src/main.rs:1:22 [INFO] [stdout] | [INFO] [stdout] 1 | use crate::structs::{PhyloTree, Genome}; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `os::unix::prelude::FileExt` and `path::Path` [INFO] [stdout] --> src/main.rs:2:11 [INFO] [stdout] | [INFO] [stdout] 2 | use std::{path::Path, env, fs::{self, File}, os::unix::prelude::FileExt, io::Write}; [INFO] [stdout] | ^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> src/structs.rs:341:33 [INFO] [stdout] | [INFO] [stdout] 341 | ... let mut cur_genome = &mut f_original[i]; [INFO] [stdout] | ----^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.62s [INFO] running `Command { std: "docker" "inspect" "7dffc956e04bafea1cded941f725cf1b9d2197bd67367e472556a02c01e5410d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7dffc956e04bafea1cded941f725cf1b9d2197bd67367e472556a02c01e5410d", kill_on_drop: false }` [INFO] [stdout] 7dffc956e04bafea1cded941f725cf1b9d2197bd67367e472556a02c01e5410d [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 9121ba4283756a20a704e6ff02533d197c891992c7a566bd59181356477cb515 [INFO] running `Command { std: "docker" "start" "-a" "9121ba4283756a20a704e6ff02533d197c891992c7a566bd59181356477cb515", kill_on_drop: false }` [INFO] [stderr] warning: unused import: `PhyloTree` [INFO] [stderr] --> src/main.rs:1:22 [INFO] [stderr] | [INFO] [stderr] 1 | use crate::structs::{PhyloTree, Genome}; [INFO] [stderr] | ^^^^^^^^^ [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_imports)]` on by default [INFO] [stderr] [INFO] [stderr] warning: unused imports: `os::unix::prelude::FileExt` and `path::Path` [INFO] [stderr] --> src/main.rs:2:11 [INFO] [stderr] | [INFO] [stderr] 2 | use std::{path::Path, env, fs::{self, File}, os::unix::prelude::FileExt, io::Write}; [INFO] [stderr] | ^^^^^^^^^^ ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] [INFO] [stderr] warning: variable does not need to be mutable [INFO] [stderr] --> src/structs.rs:341:33 [INFO] [stderr] | [INFO] [stderr] 341 | ... let mut cur_genome = &mut f_original[i]; [INFO] [stderr] | ----^^^^^^^^^^ [INFO] [stderr] | | [INFO] [stderr] | help: remove this `mut` [INFO] [stderr] | [INFO] [stderr] = note: `#[warn(unused_mut)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `genome-tree` (bin "genome-tree" test) generated 3 warnings (run `cargo fix --bin "genome-tree" --tests` to apply 3 suggestions) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.04s [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/genome_tree-3baca1ab47307977) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "9121ba4283756a20a704e6ff02533d197c891992c7a566bd59181356477cb515", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "9121ba4283756a20a704e6ff02533d197c891992c7a566bd59181356477cb515", kill_on_drop: false }` [INFO] [stdout] 9121ba4283756a20a704e6ff02533d197c891992c7a566bd59181356477cb515