[INFO] cloning repository https://github.com/natir/fbio [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/natir/fbio" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnatir%2Ffbio", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnatir%2Ffbio'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 6569e6f19b349bd7cb80026cd60d61b6a7c3aa2d [INFO] testing natir/fbio against try#8de4c7234dd9b97c9d76b58671343fdbbc9a433e+target=x86_64-unknown-linux-musl for musl_upgrade_1_2_5_in_2025-retry-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fnatir%2Ffbio" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/natir/fbio [INFO] finished tweaking git repo https://github.com/natir/fbio [INFO] tweaked toml for git repo https://github.com/natir/fbio written to /workspace/builds/worker-0-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/natir/fbio on toolchain 8de4c7234dd9b97c9d76b58671343fdbbc9a433e [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/natir/fbio already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating git repository `https://github.com/natir/cocktail.git` [INFO] [stderr] Updating git repository `https://github.com/COMBINE-lab/kmers.git` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 6177bc05b2c0a24127ebfee00cfffd4ff7cc6b7c9870d076d7978e5a70ec9b7b [INFO] running `Command { std: "docker" "start" "-a" "6177bc05b2c0a24127ebfee00cfffd4ff7cc6b7c9870d076d7978e5a70ec9b7b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "6177bc05b2c0a24127ebfee00cfffd4ff7cc6b7c9870d076d7978e5a70ec9b7b", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "6177bc05b2c0a24127ebfee00cfffd4ff7cc6b7c9870d076d7978e5a70ec9b7b", kill_on_drop: false }` [INFO] [stdout] 6177bc05b2c0a24127ebfee00cfffd4ff7cc6b7c9870d076d7978e5a70ec9b7b [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "build" "--frozen" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 35d3745a573e346b82ef9330ea4e1f132f3c453a341a1fab0cce9a90a0178f91 [INFO] running `Command { std: "docker" "start" "-a" "35d3745a573e346b82ef9330ea4e1f132f3c453a341a1fab0cce9a90a0178f91", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.124 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling proc-macro2 v1.0.37 [INFO] [stderr] Compiling ppv-lite86 v0.2.16 [INFO] [stderr] Compiling unicode-xid v0.2.2 [INFO] [stderr] Compiling siphasher v0.3.10 [INFO] [stderr] Compiling proc-macro-hack v0.5.19 [INFO] [stderr] Compiling syn v1.0.91 [INFO] [stderr] Compiling phf_shared v0.8.0 [INFO] [stderr] Compiling bit_field v0.10.1 [INFO] [stderr] Compiling cocktail v0.1.0 (https://github.com/natir/cocktail.git#bdb37edf) [INFO] [stderr] Compiling kmers v0.1.0 (https://github.com/COMBINE-lab/kmers.git#abe3e68a) [INFO] [stderr] Compiling quote v1.0.18 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling rand_pcg v0.2.1 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stderr] Compiling phf_generator v0.8.0 [INFO] [stderr] Compiling phf_macros v0.8.0 [INFO] [stderr] Compiling phf v0.8.0 [INFO] [stderr] Compiling fbio v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unnecessary transmute [INFO] [stdout] --> src/nuc2bit.rs:264:23 [INFO] [stdout] | [INFO] [stdout] 264 | .get(&std::mem::transmute::<[u8; 4], u32>( [INFO] [stdout] | ^---------------------------------- [INFO] [stdout] | | [INFO] [stdout] | _______________________help: replace this with: `u32::from_ne_bytes` [INFO] [stdout] | | [INFO] [stdout] 265 | | *(&self.seq[self.index_seq..] as *const [u8] as *const [u8; 4]), [INFO] [stdout] 266 | | )) [INFO] [stdout] | |_________________^ [INFO] [stdout] | [INFO] [stdout] = help: there's also `from_le_bytes` and `from_be_bytes` if you expect a particular byte order [INFO] [stdout] = note: `#[warn(unnecessary_transmutes)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 11.97s [INFO] running `Command { std: "docker" "inspect" "35d3745a573e346b82ef9330ea4e1f132f3c453a341a1fab0cce9a90a0178f91", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "35d3745a573e346b82ef9330ea4e1f132f3c453a341a1fab0cce9a90a0178f91", kill_on_drop: false }` [INFO] [stdout] 35d3745a573e346b82ef9330ea4e1f132f3c453a341a1fab0cce9a90a0178f91 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--no-run" "--message-format=json" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] ce3cc8d9ed6ad0a6cc22b111c42a806d846ec82e072b2a775fbfe7acbb3deea3 [INFO] running `Command { std: "docker" "start" "-a" "ce3cc8d9ed6ad0a6cc22b111c42a806d846ec82e072b2a775fbfe7acbb3deea3", kill_on_drop: false }` [INFO] [stderr] Compiling autocfg v1.1.0 [INFO] [stderr] Compiling cfg-if v1.0.0 [INFO] [stderr] Compiling libc v0.2.124 [INFO] [stderr] Compiling lazy_static v1.4.0 [INFO] [stderr] Compiling semver v1.0.7 [INFO] [stderr] Compiling serde v1.0.136 [INFO] [stderr] Compiling crossbeam-utils v0.8.8 [INFO] [stderr] Compiling memchr v2.4.1 [INFO] [stderr] Compiling getrandom v0.1.16 [INFO] [stderr] Compiling rayon-core v1.9.2 [INFO] [stderr] Compiling scopeguard v1.1.0 [INFO] [stderr] Compiling either v1.6.1 [INFO] [stderr] Compiling ryu v1.0.9 [INFO] [stderr] Compiling serde_json v1.0.79 [INFO] [stderr] Compiling unicode-width v0.1.9 [INFO] [stderr] Compiling itoa v1.0.1 [INFO] [stderr] Compiling regex-automata v0.1.10 [INFO] [stderr] Compiling plotters-backend v0.3.2 [INFO] [stderr] Compiling memoffset v0.6.5 [INFO] [stderr] Compiling crossbeam-epoch v0.9.8 [INFO] [stderr] Compiling rustc_version v0.4.0 [INFO] [stderr] Compiling num-traits v0.2.14 [INFO] [stderr] Compiling rayon v1.5.2 [INFO] [stderr] Compiling crossbeam-channel v0.5.4 [INFO] [stderr] Compiling num_cpus v1.13.1 [INFO] [stderr] Compiling rand_core v0.5.1 [INFO] [stderr] Compiling serde_derive v1.0.136 [INFO] [stderr] Compiling cast v0.2.7 [INFO] [stderr] Compiling crossbeam-deque v0.8.1 [INFO] [stderr] Compiling csv-core v0.1.10 [INFO] [stderr] Compiling plotters-svg v0.3.1 [INFO] [stderr] Compiling textwrap v0.11.0 [INFO] [stderr] Compiling itertools v0.10.3 [INFO] [stderr] Compiling regex-syntax v0.6.25 [INFO] [stderr] Compiling same-file v1.0.6 [INFO] [stderr] Compiling itoa v0.4.8 [INFO] [stderr] Compiling half v1.8.2 [INFO] [stderr] Compiling bitflags v1.3.2 [INFO] [stderr] Compiling ppv-lite86 v0.2.16 [INFO] [stderr] Compiling clap v2.34.0 [INFO] [stderr] Compiling walkdir v2.3.2 [INFO] [stderr] Compiling plotters v0.3.1 [INFO] [stderr] Compiling rand_chacha v0.2.2 [INFO] [stderr] Compiling regex v1.5.5 [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling serde_cbor v0.11.2 [INFO] [stderr] Compiling criterion-plot v0.4.4 [INFO] [stderr] Compiling tinytemplate v1.2.1 [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling rand_pcg v0.2.1 [INFO] [stderr] Compiling atty v0.2.14 [INFO] [stderr] Compiling oorandom v11.1.3 [INFO] [stderr] Compiling rand v0.7.3 [INFO] [stdout] warning: unnecessary transmute [INFO] [stdout] --> src/nuc2bit.rs:264:23 [INFO] [stdout] | [INFO] [stdout] 264 | .get(&std::mem::transmute::<[u8; 4], u32>( [INFO] [stdout] | ^---------------------------------- [INFO] [stdout] | | [INFO] [stdout] | _______________________help: replace this with: `u32::from_ne_bytes` [INFO] [stdout] | | [INFO] [stdout] 265 | | *(&self.seq[self.index_seq..] as *const [u8] as *const [u8; 4]), [INFO] [stdout] 266 | | )) [INFO] [stdout] | |_________________^ [INFO] [stdout] | [INFO] [stdout] = help: there's also `from_le_bytes` and `from_be_bytes` if you expect a particular byte order [INFO] [stdout] = note: `#[warn(unnecessary_transmutes)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Compiling criterion v0.3.5 [INFO] [stderr] Compiling fbio v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unnecessary transmute [INFO] [stdout] --> src/nuc2bit.rs:264:23 [INFO] [stdout] | [INFO] [stdout] 264 | .get(&std::mem::transmute::<[u8; 4], u32>( [INFO] [stdout] | ^---------------------------------- [INFO] [stdout] | | [INFO] [stdout] | _______________________help: replace this with: `u32::from_ne_bytes` [INFO] [stdout] | | [INFO] [stdout] 265 | | *(&self.seq[self.index_seq..] as *const [u8] as *const [u8; 4]), [INFO] [stdout] 266 | | )) [INFO] [stdout] | |_________________^ [INFO] [stdout] | [INFO] [stdout] = help: there's also `from_le_bytes` and `from_be_bytes` if you expect a particular byte order [INFO] [stdout] = note: `#[warn(unnecessary_transmutes)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 38.96s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: criterion v0.3.5 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "ce3cc8d9ed6ad0a6cc22b111c42a806d846ec82e072b2a775fbfe7acbb3deea3", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "ce3cc8d9ed6ad0a6cc22b111c42a806d846ec82e072b2a775fbfe7acbb3deea3", kill_on_drop: false }` [INFO] [stdout] ce3cc8d9ed6ad0a6cc22b111c42a806d846ec82e072b2a775fbfe7acbb3deea3 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:90999bfc7ae267e83380e433d8e61a7c072ca6729e92edbae886d3423b3a6f4c" "/opt/rustwide/cargo-home/bin/cargo" "+8de4c7234dd9b97c9d76b58671343fdbbc9a433e" "test" "--frozen" "--target" "x86_64-unknown-linux-musl", kill_on_drop: false }` [INFO] [stdout] 361f103c0964410251ac5d88fa5d402a1be5780285b12e29c89528d0ae5cfd7d [INFO] running `Command { std: "docker" "start" "-a" "361f103c0964410251ac5d88fa5d402a1be5780285b12e29c89528d0ae5cfd7d", kill_on_drop: false }` [INFO] [stderr] warning: unnecessary transmute [INFO] [stderr] --> src/nuc2bit.rs:264:23 [INFO] [stderr] | [INFO] [stderr] 264 | .get(&std::mem::transmute::<[u8; 4], u32>( [INFO] [stderr] | ^---------------------------------- [INFO] [stderr] | | [INFO] [stderr] | _______________________help: replace this with: `u32::from_ne_bytes` [INFO] [stderr] | | [INFO] [stderr] 265 | | *(&self.seq[self.index_seq..] as *const [u8] as *const [u8; 4]), [INFO] [stderr] 266 | | )) [INFO] [stderr] | |_________________^ [INFO] [stderr] | [INFO] [stderr] = help: there's also `from_le_bytes` and `from_be_bytes` if you expect a particular byte order [INFO] [stderr] = note: `#[warn(unnecessary_transmutes)]` on by default [INFO] [stderr] [INFO] [stderr] warning: `fbio` (lib) generated 1 warning (run `cargo fix --lib -p fbio` to apply 1 suggestion) [INFO] [stderr] warning: `fbio` (lib test) generated 1 warning (1 duplicate) [INFO] [stderr] Finished `test` profile [unoptimized + debuginfo] target(s) in 0.15s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: criterion v0.3.5 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/x86_64-unknown-linux-musl/debug/deps/fbio-a1dcadf36b3328f1) [INFO] [stdout] [INFO] [stdout] running 11 tests [INFO] [stdout] test nuc2bit::tests::group_phf ... ok [INFO] [stdout] test nuc2bit::tests::group_vector32 ... ok [INFO] [stdout] test nuc2bit::tests::lookup ... ok [INFO] [stdout] test nuc2bit::tests::lookup_nocheck ... ok [INFO] [stdout] test nuc2bit::tests::move_move ... ok [INFO] [stdout] test nuc2bit::tests::move_mask ... ok [INFO] [stdout] test nuc2bit::tests::test_if ... ok [INFO] [stdout] test nuc2bit::tests::test_if_upper ... ok [INFO] [stdout] test nuc2bit::tests::test_match ... ok [INFO] [stdout] test nuc2bit::tests::test_match_upper ... ok [INFO] [stdout] test nuc2bit::tests::group_vector16 ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 11 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "361f103c0964410251ac5d88fa5d402a1be5780285b12e29c89528d0ae5cfd7d", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "361f103c0964410251ac5d88fa5d402a1be5780285b12e29c89528d0ae5cfd7d", kill_on_drop: false }` [INFO] [stdout] 361f103c0964410251ac5d88fa5d402a1be5780285b12e29c89528d0ae5cfd7d