[INFO] cloning repository https://github.com/informationsea/sequencetoolkit
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/informationsea/sequencetoolkit" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 9cb4d8c1296395af550005a385efd7d521aa15f3
[INFO] checking informationsea/sequencetoolkit against master#1210e9fa3ee9c9712fa694f90f7a032f2f0fd786 for feb-17
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Finformationsea%2Fsequencetoolkit" "/workspace/builds/worker-6-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] finished tweaking git repo https://github.com/informationsea/sequencetoolkit
[INFO] tweaked toml for git repo https://github.com/informationsea/sequencetoolkit written to /workspace/builds/worker-6-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/informationsea/sequencetoolkit on toolchain 1210e9fa3ee9c9712fa694f90f7a032f2f0fd786
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1210e9fa3ee9c9712fa694f90f7a032f2f0fd786" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/informationsea/sequencetoolkit already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1210e9fa3ee9c9712fa694f90f7a032f2f0fd786" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] [stderr]     Updating crates.io index
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:61361fe0aef631f17e9d025a70c5a647956f8c671dd02950a60ad3f5cc5526d7" "/opt/rustwide/cargo-home/bin/cargo" "+1210e9fa3ee9c9712fa694f90f7a032f2f0fd786" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 712557eac58ba7fc46bd0d5a46eb9574eb658e7c74c938e5b10464f3af9567e1
[INFO] running `Command { std: "docker" "start" "-a" "712557eac58ba7fc46bd0d5a46eb9574eb658e7c74c938e5b10464f3af9567e1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "712557eac58ba7fc46bd0d5a46eb9574eb658e7c74c938e5b10464f3af9567e1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "712557eac58ba7fc46bd0d5a46eb9574eb658e7c74c938e5b10464f3af9567e1", kill_on_drop: false }`
[INFO] [stdout] 712557eac58ba7fc46bd0d5a46eb9574eb658e7c74c938e5b10464f3af9567e1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:61361fe0aef631f17e9d025a70c5a647956f8c671dd02950a60ad3f5cc5526d7" "/opt/rustwide/cargo-home/bin/cargo" "+1210e9fa3ee9c9712fa694f90f7a032f2f0fd786" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 952da8805e78c9acb401a441d4e545b5aad4c512ae541f6233127f378d580ed6
[INFO] running `Command { std: "docker" "start" "-a" "952da8805e78c9acb401a441d4e545b5aad4c512ae541f6233127f378d580ed6", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.106
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[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]     Checking thiserror v1.0.69
[INFO] [stderr]     Checking bgzip v0.3.1
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]     Checking zerofrom v0.1.6
[INFO] [stderr]    Compiling getset v0.1.6
[INFO] [stderr]     Checking yoke v0.8.1
[INFO] [stderr]     Checking zerotrie v0.2.3
[INFO] [stderr]     Checking enum-map v2.7.3
[INFO] [stderr]     Checking vcf v0.6.1
[INFO] [stderr]     Checking zerovec v0.11.5
[INFO] [stderr]     Checking addr2line v0.25.1
[INFO] [stderr]     Checking termcolor v1.4.1
[INFO] [stderr]     Checking humantime v2.3.0
[INFO] [stderr]     Checking itoa v0.4.8
[INFO] [stderr]     Checking temp-file v0.1.9
[INFO] [stderr]    Compiling sequencetoolkit v0.4.5 (/opt/rustwide/workdir/sequencetoolkit)
[INFO] [stderr]     Checking tinystr v0.8.2
[INFO] [stderr]     Checking potential_utf v0.1.4
[INFO] [stderr]     Checking env_logger v0.10.2
[INFO] [stderr]     Checking icu_collections v2.1.1
[INFO] [stderr]     Checking icu_locale_core v2.1.1
[INFO] [stderr]     Checking pretty_env_logger v0.5.0
[INFO] [stderr]     Checking xz2 v0.1.7
[INFO] [stderr]     Checking clap v4.5.55
[INFO] [stderr]     Checking backtrace v0.3.76
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking icu_provider v2.1.1
[INFO] [stderr]     Checking failure v0.1.8
[INFO] [stderr]     Checking icu_properties v2.1.2
[INFO] [stderr]     Checking icu_normalizer v2.1.1
[INFO] [stderr]     Checking multimap v0.9.1
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking rmp-serde v1.3.1
[INFO] [stderr]     Checking bincode v1.3.3
[INFO] [stderr]     Checking zstd v0.13.3
[INFO] [stderr]     Checking autocompress v0.6.0
[INFO] [stderr]    Compiling libxlsxwriter-sys v1.1.7
[INFO] [stderr]     Checking fsutils v0.1.0 (/opt/rustwide/workdir/fsutils)
[INFO] [stderr]     Checking fastqutils v0.1.0 (/opt/rustwide/workdir/fastqutils)
[INFO] [stderr]     Checking idna_adapter v1.2.1
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]     Checking url v2.5.8
[INFO] [stderr]     Checking statrs v0.16.1
[INFO] [stderr]     Checking bio v3.0.0
[INFO] [stderr]     Checking xlsxwriter v0.6.1
[INFO] [stderr]     Checking vcfutils v0.1.0 (/opt/rustwide/workdir/vcfutils)
[INFO] [stderr]     Checking bedutils v0.1.0 (/opt/rustwide/workdir/bedutils)
[INFO] [stderr]     Checking geneannot v0.1.0 (/opt/rustwide/workdir/geneannot)
[INFO] [stderr]     Checking rust-htslib v0.44.1
[INFO] [stderr]     Checking bamutils v0.1.0 (/opt/rustwide/workdir/bamutils)
[INFO] [stderr]     Checking bam2fastq v0.1.0 (/opt/rustwide/workdir/bam2fastq)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 4m 32s
[INFO] running `Command { std: "docker" "inspect" "952da8805e78c9acb401a441d4e545b5aad4c512ae541f6233127f378d580ed6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "952da8805e78c9acb401a441d4e545b5aad4c512ae541f6233127f378d580ed6", kill_on_drop: false }`
[INFO] [stdout] 952da8805e78c9acb401a441d4e545b5aad4c512ae541f6233127f378d580ed6