[INFO] cloning repository https://github.com/genomicsoup/simmr [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/genomicsoup/simmr" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgenomicsoup%2Fsimmr", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgenomicsoup%2Fsimmr'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 555a88cf1a642670448f6c3a99fbfd4c9c951683 [INFO] checking genomicsoup/simmr against master#1f12b9b0fdbe735968ac002792a720f0ba4faca6 for crater-rollup-uwu [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgenomicsoup%2Fsimmr" "/workspace/builds/worker-3-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc1/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/genomicsoup/simmr on toolchain 1f12b9b0fdbe735968ac002792a720f0ba4faca6 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1f12b9b0fdbe735968ac002792a720f0ba4faca6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/genomicsoup/simmr [INFO] finished tweaking git repo https://github.com/genomicsoup/simmr [INFO] tweaked toml for git repo https://github.com/genomicsoup/simmr written to /workspace/builds/worker-3-tc1/source/Cargo.toml [INFO] crate git repo https://github.com/genomicsoup/simmr already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1f12b9b0fdbe735968ac002792a720f0ba4faca6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"` [INFO] [stderr] note: to keep the current resolver, specify `workspace.resolver = "1"` in the workspace root's manifest [INFO] [stderr] note: to use the edition 2021 resolver, specify `workspace.resolver = "2"` in the workspace root's manifest [INFO] [stderr] note: for more details see https://doc.rust-lang.org/cargo/reference/resolver.html#resolver-versions [INFO] [stderr] Updating crates.io index [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded bitflags v2.3.1 [INFO] [stderr] Downloaded noodles-bgzf v0.22.0 [INFO] [stderr] Downloaded noodles-core v0.11.0 [INFO] [stderr] Downloaded noodles v0.40.0 [INFO] [stderr] Downloaded noodles-fasta v0.23.0 [INFO] [stderr] Downloaded streaming-stats v0.2.3 [INFO] [stderr] Downloaded needletail v0.4.1 [INFO] [stderr] Downloaded clap v3.2.11 [INFO] [stderr] Downloaded lzma-sys v0.1.19 [INFO] [stderr] Downloaded noodles-bam v0.34.0 [INFO] [stderr] Downloaded noodles-csi v0.19.0 [INFO] [stderr] Downloaded noodles-sam v0.31.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+1f12b9b0fdbe735968ac002792a720f0ba4faca6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] fe9aeca50b5bdebea918d6201f56ebbcc829a31bea1430d7c0c5c5a36c7997e8 [INFO] running `Command { std: "docker" "start" "-a" "fe9aeca50b5bdebea918d6201f56ebbcc829a31bea1430d7c0c5c5a36c7997e8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "fe9aeca50b5bdebea918d6201f56ebbcc829a31bea1430d7c0c5c5a36c7997e8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fe9aeca50b5bdebea918d6201f56ebbcc829a31bea1430d7c0c5c5a36c7997e8", kill_on_drop: false }` [INFO] [stdout] fe9aeca50b5bdebea918d6201f56ebbcc829a31bea1430d7c0c5c5a36c7997e8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+1f12b9b0fdbe735968ac002792a720f0ba4faca6" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 829f7e7cd8a4b6f0175a43169e39870fab72951a9639398caec81dd2e1439e6e [INFO] running `Command { std: "docker" "start" "-a" "829f7e7cd8a4b6f0175a43169e39870fab72951a9639398caec81dd2e1439e6e", kill_on_drop: false }` [INFO] [stderr] warning: virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"` [INFO] [stderr] note: to keep the current resolver, specify `workspace.resolver = "1"` in the workspace root's manifest [INFO] [stderr] note: to use the edition 2021 resolver, specify `workspace.resolver = "2"` in the workspace root's manifest [INFO] [stderr] note: for more details see https://doc.rust-lang.org/cargo/reference/resolver.html#resolver-versions [INFO] [stderr] Compiling autocfg v1.1.0 [INFO] [stderr] Compiling libc v0.2.126 [INFO] [stderr] Compiling 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[stderr] Checking bincode v1.3.3 [INFO] [stderr] Checking bstr v0.2.17 [INFO] [stderr] Checking shared v0.1.0 (/opt/rustwide/workdir/shared) [INFO] [stdout] warning: unused macro definition: `create_mask` [INFO] [stdout] --> shared/src/encoding.rs:15:14 [INFO] [stdout] | [INFO] [stdout] 15 | macro_rules! create_mask { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_macros)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused macro definition: `set_bits` [INFO] [stdout] --> shared/src/encoding.rs:37:14 [INFO] [stdout] | [INFO] [stdout] 37 | macro_rules! set_bits { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused macro definition: `extract_bits` [INFO] [stdout] --> shared/src/encoding.rs:53:14 [INFO] [stdout] | [INFO] [stdout] 53 | macro_rules! extract_bits { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused macro definition: `create_mask` [INFO] [stdout] --> shared/src/encoding.rs:15:14 [INFO] [stdout] | [INFO] [stdout] 15 | macro_rules! create_mask { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_macros)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused macro definition: `set_bits` [INFO] [stdout] --> shared/src/encoding.rs:37:14 [INFO] [stdout] | [INFO] [stdout] 37 | macro_rules! set_bits { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused macro definition: `extract_bits` [INFO] [stdout] --> shared/src/encoding.rs:53:14 [INFO] [stdout] | [INFO] [stdout] 53 | macro_rules! extract_bits { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Checking csv v1.1.6 [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Checking simmrd v0.1.0 (/opt/rustwide/workdir/simmrd) [INFO] [stdout] warning: 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Gamma`, `Normal`, and `Uniform` [INFO] [stdout] --> simmrd/src/main.rs:24:32 [INFO] [stdout] | [INFO] [stdout] 24 | use rand_distr::{Distribution, Gamma, Normal, Uniform, WeightedAliasIndex}; [INFO] [stdout] | ^^^^^ ^^^^^^ ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused imports: `Gamma`, `Normal`, and `Uniform` [INFO] [stdout] --> simmrd/src/main.rs:24:32 [INFO] [stdout] | [INFO] [stdout] 24 | use rand_distr::{Distribution, Gamma, Normal, Uniform, WeightedAliasIndex}; [INFO] [stdout] | ^^^^^ ^^^^^^ ^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `cigar_ndx` [INFO] [stdout] --> simmrd/src/alignment.rs:205:14 [INFO] [stdout] | [INFO] [stdout] 205 | let (cigar_ndx, cigar_char) = cigar_iter.peek().unwrap(); [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_cigar_ndx` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `invalid_ref_kmers` [INFO] [stdout] --> simmrd/src/alignment.rs:285:13 [INFO] [stdout] | [INFO] [stdout] 285 | let mut invalid_ref_kmers: u32 = 0; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_invalid_ref_kmers` [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Checking simmr v0.1.0 (/opt/rustwide/workdir/simmr) [INFO] [stdout] warning: unused variable: `invalid_query_kmers` [INFO] [stdout] --> simmrd/src/alignment.rs:286:13 [INFO] [stdout] | [INFO] [stdout] 286 | let mut invalid_query_kmers: u32 = 0; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_invalid_query_kmers` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `cigar_ndx` [INFO] [stdout] --> simmrd/src/alignment.rs:205:14 [INFO] [stdout] | [INFO] [stdout] 205 | let (cigar_ndx, cigar_char) = cigar_iter.peek().unwrap(); [INFO] [stdout] | ^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_cigar_ndx` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `e` [INFO] [stdout] --> simmrd/src/alignment.rs:326:17 [INFO] [stdout] | [INFO] [stdout] 326 | Err(e) => { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_e` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `e` [INFO] [stdout] --> simmrd/src/alignment.rs:339:17 [INFO] [stdout] | [INFO] [stdout] 339 | Err(e) => { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_e` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `invalid_ref_kmers` [INFO] [stdout] --> simmrd/src/alignment.rs:285:13 [INFO] [stdout] | [INFO] [stdout] 285 | let mut invalid_ref_kmers: u32 = 0; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_invalid_ref_kmers` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> simmrd/src/alignment.rs:285:9 [INFO] [stdout] | [INFO] [stdout] 285 | let mut invalid_ref_kmers: u32 = 0; [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> simmrd/src/alignment.rs:286:9 [INFO] [stdout] | [INFO] [stdout] 286 | let mut invalid_query_kmers: u32 = 0; [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `invalid_query_kmers` [INFO] [stdout] --> simmrd/src/alignment.rs:286:13 [INFO] [stdout] | [INFO] [stdout] 286 | let mut invalid_query_kmers: u32 = 0; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_invalid_query_kmers` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> simmrd/src/alignment.rs:346:13 [INFO] [stdout] | [INFO] [stdout] 346 | let mut kmer_counts = kmer_map.entry(ref_kmer_encoded).or_default(); [INFO] [stdout] | ----^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `e` [INFO] [stdout] --> simmrd/src/alignment.rs:326:17 [INFO] [stdout] | [INFO] [stdout] 326 | Err(e) => { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_e` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `e` [INFO] [stdout] --> simmrd/src/alignment.rs:339:17 [INFO] [stdout] | [INFO] [stdout] 339 | Err(e) => { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_e` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> simmrd/src/alignment.rs:285:9 [INFO] [stdout] | [INFO] [stdout] 285 | let mut invalid_ref_kmers: u32 = 0; [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> simmrd/src/alignment.rs:286:9 [INFO] [stdout] | [INFO] [stdout] 286 | let mut invalid_query_kmers: u32 = 0; [INFO] [stdout] | ----^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> simmrd/src/alignment.rs:346:13 [INFO] [stdout] | [INFO] [stdout] 346 | let mut kmer_counts = kmer_map.entry(ref_kmer_encoded).or_default(); [INFO] [stdout] | ----^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `i` [INFO] [stdout] --> simmrd/src/probability.rs:29:10 [INFO] [stdout] | [INFO] [stdout] 29 | for (i, (refs, alts)) in kmer_map.into_iter().enumerate() { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_i` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `i` [INFO] [stdout] --> simmrd/src/probability.rs:29:10 [INFO] [stdout] | [INFO] [stdout] 29 | for (i, (refs, alts)) in kmer_map.into_iter().enumerate() { [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_i` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> simmrd/src/main.rs:33:9 [INFO] [stdout] | [INFO] [stdout] 33 | let mut kmer_map: Arc> = [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> simmrd/src/main.rs:33:9 [INFO] [stdout] | [INFO] [stdout] 33 | let mut kmer_map: Arc> = [INFO] [stdout] | ----^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `abundance_profiles::base::coverage` [INFO] [stdout] --> simmr/src/abundance_profiles/uniform.rs:7:13 [INFO] [stdout] | [INFO] [stdout] 7 | use crate::{abundance_profiles::base::coverage, genome}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::util` [INFO] [stdout] --> simmr/src/error_profiles/custom_long.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | use crate::util; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::prelude::SliceRandom` [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use rand::prelude::SliceRandom; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Gamma` [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:12:32 [INFO] [stdout] | [INFO] [stdout] 12 | use rand_distr::{Distribution, Gamma, Normal, Uniform, WeightedAliasIndex}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `stats::stddev` [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:13:5 [INFO] [stdout] | [INFO] [stdout] 13 | use stats::stddev; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::util` [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | use crate::util; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `self::custom_long::CustomLongErrorProfile` [INFO] [stdout] --> simmr/src/error_profiles/mod.rs:14:9 [INFO] [stdout] | [INFO] [stdout] 14 | pub use self::custom_long::CustomLongErrorProfile; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::rngs::StdRng` [INFO] [stdout] --> simmr/src/genome.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | use rand::rngs::StdRng; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::Rng` [INFO] [stdout] --> simmr/src/genome.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use rand::Rng; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::SeedableRng` [INFO] [stdout] --> simmr/src/genome.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use rand::SeedableRng; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::fs::OpenOptions` [INFO] [stdout] --> simmr/src/simulate.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use std::fs::OpenOptions; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `abundance_profiles::base::coverage` [INFO] [stdout] --> simmr/src/abundance_profiles/uniform.rs:7:13 [INFO] [stdout] | [INFO] [stdout] 7 | use crate::{abundance_profiles::base::coverage, genome}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_imports)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::util` [INFO] [stdout] --> simmr/src/error_profiles/custom_long.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | use crate::util; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::prelude::SliceRandom` [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use rand::prelude::SliceRandom; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `Gamma` [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:12:32 [INFO] [stdout] | [INFO] [stdout] 12 | use rand_distr::{Distribution, Gamma, Normal, Uniform, WeightedAliasIndex}; [INFO] [stdout] | ^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `stats::stddev` [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:13:5 [INFO] [stdout] | [INFO] [stdout] 13 | use stats::stddev; [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `crate::util` [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:20:5 [INFO] [stdout] | [INFO] [stdout] 20 | use crate::util; [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `base::ErrorProfile` [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:548:9 [INFO] [stdout] | [INFO] [stdout] 548 | use base::ErrorProfile; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `self::custom_long::CustomLongErrorProfile` [INFO] [stdout] --> simmr/src/error_profiles/mod.rs:14:9 [INFO] [stdout] | [INFO] [stdout] 14 | pub use self::custom_long::CustomLongErrorProfile; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `MinimalShortErrorProfile` [INFO] [stdout] --> simmr/src/error_profiles/../tests/error_profile_tests.rs:5:43 [INFO] [stdout] | [INFO] [stdout] 5 | use crate::error_profiles::{ErrorProfile, MinimalShortErrorProfile, PerfectShortErrorProfile}; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::rngs::StdRng` [INFO] [stdout] --> simmr/src/genome.rs:7:5 [INFO] [stdout] | [INFO] [stdout] 7 | use rand::rngs::StdRng; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::Rng` [INFO] [stdout] --> simmr/src/genome.rs:8:5 [INFO] [stdout] | [INFO] [stdout] 8 | use rand::Rng; [INFO] [stdout] | ^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `rand::SeedableRng` [INFO] [stdout] --> simmr/src/genome.rs:9:5 [INFO] [stdout] | [INFO] [stdout] 9 | use rand::SeedableRng; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::fs::OpenOptions` [INFO] [stdout] --> simmr/src/simulate.rs:11:5 [INFO] [stdout] | [INFO] [stdout] 11 | use std::fs::OpenOptions; [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable pattern [INFO] [stdout] --> simmrd/src/main.rs:497:9 [INFO] [stdout] | [INFO] [stdout] 497 | _ => { [INFO] [stdout] | ^ no value can reach this [INFO] [stdout] | [INFO] [stdout] note: multiple earlier patterns match some of the same values [INFO] [stdout] --> simmrd/src/main.rs:497:9 [INFO] [stdout] | [INFO] [stdout] 495 | cli::Command::Generate(c) => generate_simulation_distributions(&c), [INFO] [stdout] | ------------------------- matches some of the same values [INFO] [stdout] 496 | cli::Command::Simulate(c) => simulate_data(&c), [INFO] [stdout] | ------------------------- matches some of the same values [INFO] [stdout] 497 | _ => { [INFO] [stdout] | ^ collectively making this unreachable [INFO] [stdout] = note: `#[warn(unreachable_patterns)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable pattern [INFO] [stdout] --> simmrd/src/main.rs:497:9 [INFO] [stdout] | [INFO] [stdout] 497 | _ => { [INFO] [stdout] | ^ no value can reach this [INFO] [stdout] | [INFO] [stdout] note: multiple earlier patterns match some of the same values [INFO] [stdout] --> simmrd/src/main.rs:497:9 [INFO] [stdout] | [INFO] [stdout] 495 | cli::Command::Generate(c) => generate_simulation_distributions(&c), [INFO] [stdout] | ------------------------- matches some of the same values [INFO] [stdout] 496 | cli::Command::Simulate(c) => simulate_data(&c), [INFO] [stdout] | ------------------------- matches some of the same values [INFO] [stdout] 497 | _ => { [INFO] [stdout] | ^ collectively making this unreachable [INFO] [stdout] = note: `#[warn(unreachable_patterns)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `serialize_alignments_to_path` is never used [INFO] [stdout] --> simmrd/src/alignment.rs:364:8 [INFO] [stdout] | [INFO] [stdout] 364 | pub fn serialize_alignments_to_path( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `deserialize_alignments_from_path` is never used [INFO] [stdout] --> simmrd/src/alignment.rs:391:8 [INFO] [stdout] | [INFO] [stdout] 391 | pub fn deserialize_alignments_from_path(filepath: &Path) -> Result, String> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `scotts_rule` is never used [INFO] [stdout] --> simmrd/src/probability.rs:70:8 [INFO] [stdout] | [INFO] [stdout] 70 | pub fn scotts_rule(data: &[u8]) -> usize { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `serialize_alignments_to_path` is never used [INFO] [stdout] --> simmrd/src/alignment.rs:364:8 [INFO] [stdout] | [INFO] [stdout] 364 | pub fn serialize_alignments_to_path( [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `deserialize_alignments_from_path` is never used [INFO] [stdout] --> simmrd/src/alignment.rs:391:8 [INFO] [stdout] | [INFO] [stdout] 391 | pub fn deserialize_alignments_from_path(filepath: &Path) -> Result, String> { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `scotts_rule` is never used [INFO] [stdout] --> simmrd/src/probability.rs:70:8 [INFO] [stdout] | [INFO] [stdout] 70 | pub fn scotts_rule(data: &[u8]) -> usize { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 15 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 15 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable expression [INFO] [stdout] --> simmr/src/error_profiles/custom_long.rs:169:13 [INFO] [stdout] | [INFO] [stdout] 165 | continue; [INFO] [stdout] | -------- any code following this expression is unreachable [INFO] [stdout] ... [INFO] [stdout] 169 | / loop { [INFO] [stdout] 170 | | let qs = rng.gen_range(0..70) as u8; [INFO] [stdout] 171 | | [INFO] [stdout] 172 | | if rng.gen::() <= gaussian(qs as f64, ¢ers, bandwidth) { [INFO] [stdout] ... | [INFO] [stdout] 175 | | } [INFO] [stdout] 176 | | } [INFO] [stdout] | |_____________^ unreachable expression [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unreachable_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable expression [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:444:9 [INFO] [stdout] | [INFO] [stdout] 352 | return scores; [INFO] [stdout] | ------------- any code following this expression is unreachable [INFO] [stdout] ... [INFO] [stdout] 444 | scores [INFO] [stdout] | ^^^^^^ unreachable expression [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable expression [INFO] [stdout] --> simmr/src/error_profiles/custom_long.rs:169:13 [INFO] [stdout] | [INFO] [stdout] 165 | continue; [INFO] [stdout] | -------- any code following this expression is unreachable [INFO] [stdout] ... [INFO] [stdout] 169 | / loop { [INFO] [stdout] 170 | | let qs = rng.gen_range(0..70) as u8; [INFO] [stdout] 171 | | [INFO] [stdout] 172 | | if rng.gen::() <= gaussian(qs as f64, ¢ers, bandwidth) { [INFO] [stdout] ... | [INFO] [stdout] 175 | | } [INFO] [stdout] 176 | | } [INFO] [stdout] | |_____________^ unreachable expression [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unreachable_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable expression [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:444:9 [INFO] [stdout] | [INFO] [stdout] 352 | return scores; [INFO] [stdout] | ------------- any code following this expression is unreachable [INFO] [stdout] ... [INFO] [stdout] 444 | scores [INFO] [stdout] | ^^^^^^ unreachable expression [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::io::prelude` [INFO] [stdout] --> simmr/src/simulate.rs:12:5 [INFO] [stdout] | [INFO] [stdout] 12 | use std::io::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `num_genomes` [INFO] [stdout] --> simmr/src/abundance_profiles/custom.rs:23:9 [INFO] [stdout] | [INFO] [stdout] 23 | num_genomes: usize, [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_num_genomes` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `total_coverage` [INFO] [stdout] --> simmr/src/abundance_profiles/custom.rs:55:13 [INFO] [stdout] | [INFO] [stdout] 55 | let total_coverage = base::total_coverage( [INFO] [stdout] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_total_coverage` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `nreads` [INFO] [stdout] --> simmr/src/abundance_profiles/custom.rs:89:24 [INFO] [stdout] | [INFO] [stdout] 89 | .map(|(g, (nreads, abund))| { [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_nreads` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `total_coverage` [INFO] [stdout] --> simmr/src/abundance_profiles/uniform.rs:54:13 [INFO] [stdout] | [INFO] [stdout] 54 | let total_coverage = base::total_coverage( [INFO] [stdout] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_total_coverage` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `nreads` [INFO] [stdout] --> simmr/src/abundance_profiles/uniform.rs:88:24 [INFO] [stdout] | [INFO] [stdout] 88 | .map(|(g, (nreads, abund))| { [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_nreads` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused import: `std::io::prelude` [INFO] [stdout] --> simmr/src/simulate.rs:12:5 [INFO] [stdout] | [INFO] [stdout] 12 | use std::io::prelude::*; [INFO] [stdout] | ^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `num_genomes` [INFO] [stdout] --> simmr/src/abundance_profiles/custom.rs:23:9 [INFO] [stdout] | [INFO] [stdout] 23 | num_genomes: usize, [INFO] [stdout] | ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_num_genomes` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_variables)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `total_coverage` [INFO] [stdout] --> simmr/src/abundance_profiles/custom.rs:55:13 [INFO] [stdout] | [INFO] [stdout] 55 | let total_coverage = base::total_coverage( [INFO] [stdout] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_total_coverage` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `nreads` [INFO] [stdout] --> simmr/src/abundance_profiles/custom.rs:89:24 [INFO] [stdout] | [INFO] [stdout] 89 | .map(|(g, (nreads, abund))| { [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_nreads` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `total_coverage` [INFO] [stdout] --> simmr/src/abundance_profiles/uniform.rs:54:13 [INFO] [stdout] | [INFO] [stdout] 54 | let total_coverage = base::total_coverage( [INFO] [stdout] | ^^^^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_total_coverage` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `nreads` [INFO] [stdout] --> simmr/src/abundance_profiles/uniform.rs:88:24 [INFO] [stdout] | [INFO] [stdout] 88 | .map(|(g, (nreads, abund))| { [INFO] [stdout] | ^^^^^^ help: if this is intentional, prefix it with an underscore: `_nreads` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable pattern [INFO] [stdout] --> simmr/src/cli.rs:299:9 [INFO] [stdout] | [INFO] [stdout] 299 | _ => todo!(), [INFO] [stdout] | ^ no value can reach this [INFO] [stdout] | [INFO] [stdout] note: multiple earlier patterns match some of the same values [INFO] [stdout] --> simmr/src/cli.rs:299:9 [INFO] [stdout] | [INFO] [stdout] 231 | ErrorProfile::PerfectShort => Box::new(error_profiles::PerfectShortErrorProfile { [INFO] [stdout] | -------------------------- matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 235 | ErrorProfile::MinimalShort => Box::new(error_profiles::MinimalShortErrorProfile { [INFO] [stdout] | -------------------------- matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 254 | ErrorProfile::CustomShort => { [INFO] [stdout] | ------------------------- matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 284 | ErrorProfile::PerfectLong => Box::new(error_profiles::PerfectLongErrorProfile {}), [INFO] [stdout] | ------------------------- matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 299 | _ => todo!(), [INFO] [stdout] | ^ ...and 1 other patterns collectively make this unreachable [INFO] [stdout] = note: `#[warn(unreachable_patterns)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/custom_long.rs:51:31 [INFO] [stdout] | [INFO] [stdout] 51 | fn get_insert_size(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/custom_long.rs:55:38 [INFO] [stdout] | [INFO] [stdout] 55 | fn get_random_insert_size(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unreachable pattern [INFO] [stdout] --> simmr/src/cli.rs:299:9 [INFO] [stdout] | [INFO] [stdout] 299 | _ => todo!(), [INFO] [stdout] | ^ no value can reach this [INFO] [stdout] | [INFO] [stdout] note: multiple earlier patterns match some of the same values [INFO] [stdout] --> simmr/src/cli.rs:299:9 [INFO] [stdout] | [INFO] [stdout] 231 | ErrorProfile::PerfectShort => Box::new(error_profiles::PerfectShortErrorProfile { [INFO] [stdout] | -------------------------- matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 235 | ErrorProfile::MinimalShort => Box::new(error_profiles::MinimalShortErrorProfile { [INFO] [stdout] | -------------------------- matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 254 | ErrorProfile::CustomShort => { [INFO] [stdout] | ------------------------- matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 284 | ErrorProfile::PerfectLong => Box::new(error_profiles::PerfectLongErrorProfile {}), [INFO] [stdout] | ------------------------- matches some of the same values [INFO] [stdout] ... [INFO] [stdout] 299 | _ => todo!(), [INFO] [stdout] | ^ ...and 1 other patterns collectively make this unreachable [INFO] [stdout] = note: `#[warn(unreachable_patterns)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `rng` [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:156:17 [INFO] [stdout] | [INFO] [stdout] 156 | let mut rng = match seed { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_rng` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:156:13 [INFO] [stdout] | [INFO] [stdout] 156 | let mut rng = match seed { [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/custom_long.rs:51:31 [INFO] [stdout] | [INFO] [stdout] 51 | fn get_insert_size(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/custom_long.rs:55:38 [INFO] [stdout] | [INFO] [stdout] 55 | fn get_random_insert_size(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `rng` [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:329:17 [INFO] [stdout] | [INFO] [stdout] 329 | let mut rng = match seed { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_rng` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:329:13 [INFO] [stdout] | [INFO] [stdout] 329 | let mut rng = match seed { [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/minimal_long.rs:29:31 [INFO] [stdout] | [INFO] [stdout] 29 | fn get_insert_size(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/minimal_long.rs:33:38 [INFO] [stdout] | [INFO] [stdout] 33 | fn get_random_insert_size(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/minimal_long.rs:146:48 [INFO] [stdout] | [INFO] [stdout] 146 | fn simulate_errors(&self, sequence: &[u8], seed: Option) -> Vec { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `sequence` [INFO] [stdout] --> simmr/src/error_profiles/minimal_short.rs:29:31 [INFO] [stdout] | [INFO] [stdout] 29 | fn simulate_errors(&self, sequence: &[u8], seed: Option) -> Vec { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_sequence` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/minimal_short.rs:29:48 [INFO] [stdout] | [INFO] [stdout] 29 | fn simulate_errors(&self, sequence: &[u8], seed: Option) -> Vec { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/perfect_long.rs:24:31 [INFO] [stdout] | [INFO] [stdout] 24 | fn get_insert_size(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/perfect_long.rs:28:38 [INFO] [stdout] | [INFO] [stdout] 28 | fn get_random_insert_size(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/perfect_long.rs:32:31 [INFO] [stdout] | [INFO] [stdout] 32 | fn get_read_length(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `rng` [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:156:17 [INFO] [stdout] | [INFO] [stdout] 156 | let mut rng = match seed { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_rng` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:156:13 [INFO] [stdout] | [INFO] [stdout] 156 | let mut rng = match seed { [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_mut)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/perfect_long.rs:125:48 [INFO] [stdout] | [INFO] [stdout] 125 | fn simulate_errors(&self, sequence: &[u8], seed: Option) -> Vec { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/perfect_short.rs:22:31 [INFO] [stdout] | [INFO] [stdout] 22 | fn get_read_length(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/perfect_short.rs:26:38 [INFO] [stdout] | [INFO] [stdout] 26 | fn get_random_read_length(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/perfect_short.rs:30:31 [INFO] [stdout] | [INFO] [stdout] 30 | fn get_insert_size(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `rng` [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:329:17 [INFO] [stdout] | [INFO] [stdout] 329 | let mut rng = match seed { [INFO] [stdout] | ^^^ help: if this is intentional, prefix it with an underscore: `_rng` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/perfect_short.rs:38:38 [INFO] [stdout] | [INFO] [stdout] 38 | fn get_random_insert_size(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:329:13 [INFO] [stdout] | [INFO] [stdout] 329 | let mut rng = match seed { [INFO] [stdout] | ----^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/minimal_long.rs:29:31 [INFO] [stdout] | [INFO] [stdout] 29 | fn get_insert_size(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/minimal_long.rs:33:38 [INFO] [stdout] | [INFO] [stdout] 33 | fn get_random_insert_size(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/minimal_long.rs:146:48 [INFO] [stdout] | [INFO] [stdout] 146 | fn simulate_errors(&self, sequence: &[u8], seed: Option) -> Vec { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `sequence` [INFO] [stdout] --> simmr/src/error_profiles/minimal_short.rs:29:31 [INFO] [stdout] | [INFO] [stdout] 29 | fn simulate_errors(&self, sequence: &[u8], seed: Option) -> Vec { [INFO] [stdout] | ^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_sequence` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/minimal_short.rs:29:48 [INFO] [stdout] | [INFO] [stdout] 29 | fn simulate_errors(&self, sequence: &[u8], seed: Option) -> Vec { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/perfect_long.rs:24:31 [INFO] [stdout] | [INFO] [stdout] 24 | fn get_insert_size(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/perfect_long.rs:28:38 [INFO] [stdout] | [INFO] [stdout] 28 | fn get_random_insert_size(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/perfect_long.rs:32:31 [INFO] [stdout] | [INFO] [stdout] 32 | fn get_read_length(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/perfect_long.rs:125:48 [INFO] [stdout] | [INFO] [stdout] 125 | fn simulate_errors(&self, sequence: &[u8], seed: Option) -> Vec { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/perfect_short.rs:22:31 [INFO] [stdout] | [INFO] [stdout] 22 | fn get_read_length(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/perfect_short.rs:26:38 [INFO] [stdout] | [INFO] [stdout] 26 | fn get_random_read_length(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/perfect_short.rs:30:31 [INFO] [stdout] | [INFO] [stdout] 30 | fn get_insert_size(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `seed` [INFO] [stdout] --> simmr/src/error_profiles/perfect_short.rs:38:38 [INFO] [stdout] | [INFO] [stdout] 38 | fn get_random_insert_size(&self, seed: Option) -> u16 { [INFO] [stdout] | ^^^^ help: if this is intentional, prefix it with an underscore: `_seed` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `e` [INFO] [stdout] --> simmr/src/simulate.rs:383:25 [INFO] [stdout] | [INFO] [stdout] 383 | Err(e) => continue, [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_e` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> simmr/src/simulate.rs:358:17 [INFO] [stdout] | [INFO] [stdout] 358 | let mut read_length = error_profile.get_random_read_length(seed); [INFO] [stdout] | ----^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused variable: `e` [INFO] [stdout] --> simmr/src/simulate.rs:383:25 [INFO] [stdout] | [INFO] [stdout] 383 | Err(e) => continue, [INFO] [stdout] | ^ help: if this is intentional, prefix it with an underscore: `_e` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: variable does not need to be mutable [INFO] [stdout] --> simmr/src/simulate.rs:358:17 [INFO] [stdout] | [INFO] [stdout] 358 | let mut read_length = error_profile.get_random_read_length(seed); [INFO] [stdout] | ----^^^^^^^^^^^ [INFO] [stdout] | | [INFO] [stdout] | help: remove this `mut` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `quality_bins2` is never read [INFO] [stdout] --> simmr/src/error_profiles/custom_long.rs:28:9 [INFO] [stdout] | [INFO] [stdout] 22 | pub struct CustomLongErrorProfile { [INFO] [stdout] | ---------------------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 28 | pub quality_bins2: Vec>, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `QualityScoreDistribution` is never constructed [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:22:12 [INFO] [stdout] | [INFO] [stdout] 22 | pub struct QualityScoreDistribution { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: function `gaussian` is never used [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:60:4 [INFO] [stdout] | [INFO] [stdout] 60 | fn gaussian(x: f64, xs: &[f64], bandwidth: f64) -> f64 { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `read_length` and `read_length_std` are never read [INFO] [stdout] --> simmr/src/error_profiles/minimal_long.rs:19:9 [INFO] [stdout] | [INFO] [stdout] 17 | pub struct MinimalLongErrorProfile { [INFO] [stdout] | ----------------------- fields in this struct [INFO] [stdout] 18 | pub mean_phred_score: u8, [INFO] [stdout] 19 | pub read_length: u16, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] 20 | pub read_length_std: f64, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `uuid` is never read [INFO] [stdout] --> simmr/src/genome.rs:20:9 [INFO] [stdout] | [INFO] [stdout] 18 | pub struct Seq { [INFO] [stdout] | --- field in this struct [INFO] [stdout] 19 | pub id: Vec, [INFO] [stdout] 20 | pub uuid: u64, [INFO] [stdout] | ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Seq` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `contiguous` is never read [INFO] [stdout] --> simmr/src/genome.rs:40:9 [INFO] [stdout] | [INFO] [stdout] 26 | pub struct Genome { [INFO] [stdout] | ------ field in this struct [INFO] [stdout] ... [INFO] [stdout] 40 | pub contiguous: bool, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Genome` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `PERead` is never constructed [INFO] [stdout] --> simmr/src/simulate.rs:36:12 [INFO] [stdout] | [INFO] [stdout] 36 | pub struct PERead { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `PERead` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `LongRead` is never constructed [INFO] [stdout] --> simmr/src/simulate.rs:46:12 [INFO] [stdout] | [INFO] [stdout] 46 | pub struct LongRead { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `LongRead` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 49 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `quality_bins2` is never read [INFO] [stdout] --> simmr/src/error_profiles/custom_long.rs:28:9 [INFO] [stdout] | [INFO] [stdout] 22 | pub struct CustomLongErrorProfile { [INFO] [stdout] | ---------------------- field in this struct [INFO] [stdout] ... [INFO] [stdout] 28 | pub quality_bins2: Vec>, [INFO] [stdout] | ^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `QualityScoreDistribution` is never constructed [INFO] [stdout] --> simmr/src/error_profiles/custom_short.rs:22:12 [INFO] [stdout] | [INFO] [stdout] 22 | pub struct QualityScoreDistribution { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `read_length` and `read_length_std` are never read [INFO] [stdout] --> simmr/src/error_profiles/minimal_long.rs:19:9 [INFO] [stdout] | [INFO] [stdout] 17 | pub struct MinimalLongErrorProfile { [INFO] [stdout] | ----------------------- fields in this struct [INFO] [stdout] 18 | pub mean_phred_score: u8, [INFO] [stdout] 19 | pub read_length: u16, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] 20 | pub read_length_std: f64, [INFO] [stdout] | ^^^^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `uuid` is never read [INFO] [stdout] --> simmr/src/genome.rs:20:9 [INFO] [stdout] | [INFO] [stdout] 18 | pub struct Seq { [INFO] [stdout] | --- field in this struct [INFO] [stdout] 19 | pub id: Vec, [INFO] [stdout] 20 | pub uuid: u64, [INFO] [stdout] | ^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Seq` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: field `contiguous` is never read [INFO] [stdout] --> simmr/src/genome.rs:40:9 [INFO] [stdout] | [INFO] [stdout] 26 | pub struct Genome { [INFO] [stdout] | ------ field in this struct [INFO] [stdout] ... [INFO] [stdout] 40 | pub contiguous: bool, [INFO] [stdout] | ^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Genome` has derived impls for the traits `Clone` and `Debug`, but these are intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `PERead` is never constructed [INFO] [stdout] --> simmr/src/simulate.rs:36:12 [INFO] [stdout] | [INFO] [stdout] 36 | pub struct PERead { [INFO] [stdout] | ^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `PERead` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: struct `LongRead` is never constructed [INFO] [stdout] --> simmr/src/simulate.rs:46:12 [INFO] [stdout] | [INFO] [stdout] 46 | pub struct LongRead { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `LongRead` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 50 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 7.47s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: buf_redux v0.8.4 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] running `Command { std: "docker" "inspect" "829f7e7cd8a4b6f0175a43169e39870fab72951a9639398caec81dd2e1439e6e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "829f7e7cd8a4b6f0175a43169e39870fab72951a9639398caec81dd2e1439e6e", kill_on_drop: false }` [INFO] [stdout] 829f7e7cd8a4b6f0175a43169e39870fab72951a9639398caec81dd2e1439e6e [INFO] checking genomicsoup/simmr against try#f9935d29d867449445ee008640ccca1bf1ae0889+rustflags=-Dtail_expr_drop_order for crater-rollup-uwu [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fgenomicsoup%2Fsimmr" "/workspace/builds/worker-3-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc2/source'... [INFO] [stderr] done. [INFO] validating manifest of git repo https://github.com/genomicsoup/simmr on toolchain f9935d29d867449445ee008640ccca1bf1ae0889 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f9935d29d867449445ee008640ccca1bf1ae0889" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking git repo https://github.com/genomicsoup/simmr [INFO] finished tweaking git repo https://github.com/genomicsoup/simmr [INFO] tweaked toml for git repo https://github.com/genomicsoup/simmr written to /workspace/builds/worker-3-tc2/source/Cargo.toml [INFO] crate git repo https://github.com/genomicsoup/simmr already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+f9935d29d867449445ee008640ccca1bf1ae0889" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"` [INFO] [stderr] note: to keep the current resolver, specify `workspace.resolver = "1"` in the workspace root's manifest [INFO] [stderr] note: to use the edition 2021 resolver, specify `workspace.resolver = "2"` in the workspace root's manifest [INFO] [stderr] note: for more details see https://doc.rust-lang.org/cargo/reference/resolver.html#resolver-versions [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+f9935d29d867449445ee008640ccca1bf1ae0889" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] c21d8e135c3a1ee646a342b1270f42858521e21352df636a86a7f191f47a58d8 [INFO] running `Command { std: "docker" "start" "-a" "c21d8e135c3a1ee646a342b1270f42858521e21352df636a86a7f191f47a58d8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "c21d8e135c3a1ee646a342b1270f42858521e21352df636a86a7f191f47a58d8", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "c21d8e135c3a1ee646a342b1270f42858521e21352df636a86a7f191f47a58d8", kill_on_drop: false }` [INFO] [stdout] c21d8e135c3a1ee646a342b1270f42858521e21352df636a86a7f191f47a58d8 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Dtail_expr_drop_order" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+f9935d29d867449445ee008640ccca1bf1ae0889" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 42dd5f4ae6ffc8dc58c0f7fb58d628ae6d18834f96b3d474ffde83c558af8285 [INFO] running `Command { std: "docker" "start" "-a" "42dd5f4ae6ffc8dc58c0f7fb58d628ae6d18834f96b3d474ffde83c558af8285", kill_on_drop: false }` [INFO] [stderr] warning: virtual workspace defaulting to `resolver = "1"` despite one or more workspace members being on edition 2021 which implies `resolver = "2"` [INFO] [stderr] note: to keep the current resolver, specify `workspace.resolver = "1"` in the workspace root's manifest [INFO] [stderr] note: to use the edition 2021 resolver, specify `workspace.resolver = "2"` in the workspace root's manifest [INFO] [stderr] note: for more details see https://doc.rust-lang.org/cargo/reference/resolver.html#resolver-versions [INFO] [stderr] Compiling autocfg v1.1.0 [INFO] [stderr] Compiling libc v0.2.126 [INFO] [stderr] Compiling proc-macro2 v1.0.39 [INFO] [stderr] Compiling unicode-ident v1.0.1 [INFO] [stderr] Compiling syn v1.0.96 [INFO] [stderr] Compiling memchr v2.5.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.15 [INFO] [stderr] Compiling crc32fast v1.3.2 [INFO] [stderr] Checking adler v1.0.2 [INFO] [stderr] Compiling serde_derive v1.0.137 [INFO] [stderr] Compiling serde v1.0.137 [INFO] [stderr] Checking static_assertions v1.1.0 [INFO] [stderr] Compiling cc v1.0.73 [INFO] [stderr] Compiling libm v0.2.2 [INFO] [stderr] Compiling pkg-config v0.3.25 [INFO] [stderr] Checking hashbrown v0.11.2 [INFO] [stderr] Checking lexical-util v0.8.5 [INFO] [stderr] Checking miniz_oxide v0.5.3 [INFO] [stderr] Checking once_cell v1.12.0 [INFO] [stderr] Compiling proc-macro-error-attr v1.0.4 [INFO] [stderr] Checking lazy_static v1.4.0 [INFO] [stderr] Compiling proc-macro-error v1.0.4 [INFO] [stderr] Checking byteorder v1.4.3 [INFO] [stderr] Checking ppv-lite86 v0.2.16 [INFO] [stderr] Compiling indexmap v1.8.2 [INFO] [stderr] Compiling num-traits v0.2.15 [INFO] [stderr] Compiling memoffset v0.8.0 [INFO] [stderr] Checking bytes v1.1.0 [INFO] [stderr] Compiling log v0.4.17 [INFO] [stderr] Checking flate2 v1.0.24 [INFO] [stderr] Checking crossbeam-channel v0.5.8 [INFO] [stderr] Compiling crossbeam-epoch v0.9.14 [INFO] [stderr] Checking tracing-core v0.1.27 [INFO] [stderr] Checking noodles-core v0.11.0 [INFO] [stderr] Checking lexical-write-integer v0.8.5 [INFO] [stderr] Checking lexical-parse-integer v0.8.6 [INFO] [stderr] Compiling quote v1.0.18 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Checking os_str_bytes v6.1.0 [INFO] [stderr] Checking scopeguard v1.1.0 [INFO] [stderr] Checking lexical-write-float v0.8.5 [INFO] [stderr] Compiling heck v0.4.0 [INFO] [stderr] Checking sharded-slab v0.1.4 [INFO] [stderr] Checking lexical-parse-float v0.8.5 [INFO] [stderr] Checking getrandom v0.2.7 [INFO] [stderr] Checking tracing-log v0.1.3 [INFO] [stderr] Checking clap_lex v0.2.2 [INFO] [stderr] Checking atty v0.2.14 [INFO] [stderr] Checking thread_local v1.1.4 [INFO] [stderr] Checking bitflags v2.3.1 [INFO] [stderr] Checking noodles-bgzf v0.22.0 [INFO] [stderr] Checking smallvec v1.8.0 [INFO] [stderr] Checking rand_core v0.6.3 [INFO] [stderr] Checking textwrap v0.15.0 [INFO] [stderr] Checking strsim v0.10.0 [INFO] [stderr] Checking pin-project-lite v0.2.9 [INFO] [stderr] Checking bitflags v1.3.2 [INFO] [stderr] Checking ansi_term v0.12.1 [INFO] [stderr] Compiling rayon-core v1.11.0 [INFO] [stderr] Checking termcolor v1.1.3 [INFO] [stderr] Checking crossbeam-deque v0.8.3 [INFO] [stderr] Compiling lzma-sys v0.1.19 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Compiling bzip2-sys v0.1.11+1.0.8 [INFO] [stderr] Checking num_cpus v1.15.0 [INFO] [stderr] Checking regex-automata v0.1.10 [INFO] [stderr] Checking safemem v0.3.3 [INFO] [stderr] Checking noodles-csi v0.19.0 [INFO] [stderr] Checking noodles-fasta v0.23.0 [INFO] [stderr] Checking either v1.7.0 [INFO] [stderr] Checking buf_redux v0.8.4 [INFO] [stderr] Checking csv-core v0.1.10 [INFO] [stderr] Checking itoa v0.4.8 [INFO] [stderr] Checking bytecount v0.6.3 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking ryu v1.0.10 [INFO] [stderr] Checking itertools v0.10.3 [INFO] [stderr] Checking lexical-core v0.8.5 [INFO] [stderr] Checking tracing-subscriber v0.3.11 [INFO] [stderr] Checking hex v0.4.3 [INFO] [stderr] Checking xz2 v0.1.7 [INFO] [stderr] Checking noodles-sam v0.31.0 [INFO] [stderr] Checking streaming-stats v0.2.3 [INFO] [stderr] Checking rayon v1.7.0 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking uuid v1.1.2 [INFO] [stderr] Checking bzip2 v0.4.3 [INFO] [stderr] Checking needletail v0.4.1 [INFO] [stderr] Checking noodles-bam v0.34.0 [INFO] [stderr] Checking noodles v0.40.0 [INFO] [stderr] Compiling tracing-attributes v0.1.21 [INFO] [stderr] Compiling clap_derive v3.2.7 [INFO] [stderr] Checking tracing v0.1.35 [INFO] [stderr] Checking clap v3.2.11 [INFO] [stderr] Checking bincode v1.3.3 [INFO] [stderr] Checking bstr v0.2.17 [INFO] [stderr] Checking shared v0.1.0 (/opt/rustwide/workdir/shared) [INFO] [stdout] warning: unused macro definition: `create_mask` [INFO] [stdout] --> shared/src/encoding.rs:15:14 [INFO] [stdout] | [INFO] [stdout] 15 | macro_rules! create_mask { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_macros)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused macro definition: `set_bits` [INFO] [stdout] --> shared/src/encoding.rs:37:14 [INFO] [stdout] | [INFO] [stdout] 37 | macro_rules! set_bits { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused macro definition: `extract_bits` [INFO] [stdout] --> shared/src/encoding.rs:53:14 [INFO] [stdout] | [INFO] [stdout] 53 | macro_rules! extract_bits { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused macro definition: `create_mask` [INFO] [stdout] --> shared/src/encoding.rs:15:14 [INFO] [stdout] | [INFO] [stdout] 15 | macro_rules! create_mask { [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(unused_macros)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused macro definition: `set_bits` [INFO] [stdout] --> shared/src/encoding.rs:37:14 [INFO] [stdout] | [INFO] [stdout] 37 | macro_rules! set_bits { [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unused macro definition: `extract_bits` [INFO] [stdout] --> shared/src/encoding.rs:53:14 [INFO] [stdout] | [INFO] [stdout] 53 | macro_rules! extract_bits { [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Checking csv v1.1.6 [INFO] [stdout] error: these values and local bindings have significant drop implementation that will have a different drop order from that of Edition 2021 [INFO] [stdout] --> shared/src/encoding.rs:259:11 [INFO] [stdout] | [INFO] [stdout] 249 | let mut file = match fs::OpenOptions::new() [INFO] [stdout] | ---- these values have significant drop implementation and will observe changes in drop order under Edition 2024 [INFO] [stdout] ... [INFO] [stdout] 254 | Ok(f) => f, [INFO] [stdout] | - these values have significant drop implementation and will observe changes in drop order under Edition 2024 [INFO] [stdout] 255 | Err(e) => return Err(format!("{}", e)), [INFO] [stdout] | - these values have significant drop implementation and will observe changes in drop order under Edition 2024 [INFO] [stdout] ... [INFO] [stdout] 259 | match file.write_all(&bytes) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this changes meaning in Rust 2024 [INFO] [stdout] = note: for more information, see issue #123739 [INFO] [stdout] = note: requested on the command line with `-D tail-expr-drop-order` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error; 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `shared` (lib) due to 2 previous errors; 3 warnings emitted [INFO] [stderr] warning: build failed, waiting for other jobs to finish... [INFO] [stdout] error: these values and local bindings have significant drop implementation that will have a different drop order from that of Edition 2021 [INFO] [stdout] --> shared/src/encoding.rs:259:11 [INFO] [stdout] | [INFO] [stdout] 249 | let mut file = match fs::OpenOptions::new() [INFO] [stdout] | ---- these values have significant drop implementation and will observe changes in drop order under Edition 2024 [INFO] [stdout] ... [INFO] [stdout] 254 | Ok(f) => f, [INFO] [stdout] | - these values have significant drop implementation and will observe changes in drop order under Edition 2024 [INFO] [stdout] 255 | Err(e) => return Err(format!("{}", e)), [INFO] [stdout] | - these values have significant drop implementation and will observe changes in drop order under Edition 2024 [INFO] [stdout] ... [INFO] [stdout] 259 | match file.write_all(&bytes) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = warning: this changes meaning in Rust 2024 [INFO] [stdout] = note: for more information, see issue #123739 [INFO] [stdout] = note: requested on the command line with `-D tail-expr-drop-order` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] error: aborting due to 1 previous error; 3 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] error: could not compile `shared` (lib test) due to 2 previous errors; 3 warnings emitted [INFO] running `Command { std: "docker" "inspect" "42dd5f4ae6ffc8dc58c0f7fb58d628ae6d18834f96b3d474ffde83c558af8285", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "42dd5f4ae6ffc8dc58c0f7fb58d628ae6d18834f96b3d474ffde83c558af8285", kill_on_drop: false }` [INFO] [stdout] 42dd5f4ae6ffc8dc58c0f7fb58d628ae6d18834f96b3d474ffde83c558af8285