[INFO] fetching crate hgvs 0.17.2... [INFO] checking hgvs-0.17.2 against master#1f12b9b0fdbe735968ac002792a720f0ba4faca6 for crater-rollup-uwu [INFO] extracting crate hgvs 0.17.2 into /workspace/builds/worker-4-tc1/source [INFO] validating manifest of crates.io crate hgvs 0.17.2 on toolchain 1f12b9b0fdbe735968ac002792a720f0ba4faca6 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1f12b9b0fdbe735968ac002792a720f0ba4faca6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] started tweaking crates.io crate hgvs 0.17.2 [INFO] finished tweaking crates.io crate hgvs 0.17.2 [INFO] tweaked toml for crates.io crate hgvs 0.17.2 written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1f12b9b0fdbe735968ac002792a720f0ba4faca6" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Updating crates.io index [INFO] [stderr] Locking 289 packages to latest compatible versions [INFO] [stderr] Adding addr2line v0.22.0 (latest: v0.24.1) [INFO] [stderr] Adding anes v0.1.6 (latest: v0.2.0) [INFO] [stderr] Adding bitflags v1.3.2 (latest: v2.6.0) [INFO] [stderr] Adding derive-new v0.6.0 (latest: v0.7.0) [INFO] [stderr] Adding encode_unicode v0.3.6 (latest: v1.0.0) [INFO] [stderr] Adding fallible-iterator v0.2.0 (latest: v0.3.0) [INFO] [stderr] Adding fixedbitset v0.4.2 (latest: v0.5.7) [INFO] [stderr] Adding generic-array v0.14.7 (latest: v1.1.0) [INFO] [stderr] Adding gimli v0.29.0 (latest: v0.31.0) [INFO] [stderr] Adding hermit-abi v0.3.9 (latest: v0.4.0) [INFO] [stderr] Adding itertools v0.10.5 (latest: v0.13.0) [INFO] [stderr] Adding libsqlite3-sys v0.28.0 (latest: v0.30.1) [INFO] [stderr] Adding matchers v0.1.0 (latest: v0.2.0) [INFO] [stderr] Adding miniz_oxide v0.7.4 (latest: v0.8.0) [INFO] [stderr] Adding nalgebra v0.32.6 (latest: v0.33.0) [INFO] [stderr] Adding ndarray v0.15.6 (latest: v0.16.1) [INFO] [stderr] Adding noodles v0.76.0 (latest: v0.79.0) [INFO] [stderr] Adding noodles-bgzf v0.30.0 (latest: v0.32.0) [INFO] [stderr] Adding noodles-fasta v0.39.0 (latest: v0.42.0) [INFO] [stderr] Adding nu-ansi-term v0.46.0 (latest: v0.50.1) [INFO] [stderr] Adding redox_syscall v0.4.1 (latest: v0.5.3) [INFO] [stderr] Adding regex-automata v0.1.10 (latest: v0.4.7) [INFO] [stderr] Adding regex-syntax v0.6.29 (latest: v0.8.4) [INFO] [stderr] Adding rusqlite v0.31.0 (latest: v0.32.1) [INFO] [stderr] Adding rustc_version v0.1.7 (latest: v0.4.1) [INFO] [stderr] Adding semver v0.1.20 (latest: v1.0.23) [INFO] [stderr] Adding simba v0.8.1 (latest: v0.9.0) [INFO] [stderr] Adding siphasher v0.3.11 (latest: v1.0.1) [INFO] [stderr] Adding wasi v0.11.0+wasi-snapshot-preview1 (latest: v0.13.2+wasi-0.2.1) [INFO] [stderr] Adding windows-core v0.52.0 (latest: v0.58.0) [INFO] [stderr] Adding windows-sys v0.52.0 (latest: v0.59.0) [INFO] [stderr] Adding yansi v0.5.1 (latest: v1.0.1) [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1f12b9b0fdbe735968ac002792a720f0ba4faca6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded noodles-fasta v0.39.0 [INFO] [stderr] Downloaded rstest v0.22.0 [INFO] [stderr] Downloaded quick_cache v0.6.5 [INFO] [stderr] Downloaded noodles v0.76.0 [INFO] [stderr] Downloaded noodles-core v0.15.0 [INFO] [stderr] Downloaded seqrepo v0.10.3 [INFO] [stderr] Downloaded bio-types v1.0.4 [INFO] [stderr] Downloaded bit-set v0.8.0 [INFO] [stderr] Downloaded cached_proc_macro v0.23.0 [INFO] [stderr] Downloaded bit-vec v0.8.0 [INFO] [stderr] Downloaded editdistancek v1.0.2 [INFO] [stderr] Downloaded itertools-num v0.1.3 [INFO] [stderr] Downloaded triple_accel v0.4.0 [INFO] [stderr] Downloaded postgres v0.19.8 [INFO] [stderr] Downloaded cached v0.53.1 [INFO] [stderr] Downloaded rstest_macros v0.22.0 [INFO] [stderr] Downloaded tokio-postgres v0.7.11 [INFO] [stderr] Downloaded statrs v0.17.1 [INFO] [stderr] Downloaded noodles-bgzf v0.30.0 [INFO] [stderr] Downloaded cached_proc_macro_types v0.1.1 [INFO] [stderr] Downloaded bio v2.0.1 [INFO] [stderr] Downloaded biocommons-bioutils v0.1.4 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+1f12b9b0fdbe735968ac002792a720f0ba4faca6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 8ab52b793e97499288309884306445a5dcf367d344b5e13c077412045a34f922 [INFO] running `Command { std: "docker" "start" "-a" "8ab52b793e97499288309884306445a5dcf367d344b5e13c077412045a34f922", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "8ab52b793e97499288309884306445a5dcf367d344b5e13c077412045a34f922", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8ab52b793e97499288309884306445a5dcf367d344b5e13c077412045a34f922", kill_on_drop: false }` [INFO] [stdout] 8ab52b793e97499288309884306445a5dcf367d344b5e13c077412045a34f922 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+1f12b9b0fdbe735968ac002792a720f0ba4faca6" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4b0b5167c8696cf4b90cb376d7294f0f7c2839ddf79aee2e18bc6e6eba528b81 [INFO] running `Command { std: "docker" "start" "-a" "4b0b5167c8696cf4b90cb376d7294f0f7c2839ddf79aee2e18bc6e6eba528b81", kill_on_drop: false }` [INFO] [stderr] Checking allocator-api2 v0.2.18 [INFO] [stderr] Compiling ahash v0.8.11 [INFO] [stderr] Checking aho-corasick v1.1.3 [INFO] [stderr] Checking futures-channel v0.3.30 [INFO] [stderr] Compiling lock_api v0.4.12 [INFO] [stderr] Compiling matrixmultiply v0.3.9 [INFO] [stderr] Compiling serde_derive v1.0.209 [INFO] [stderr] Compiling futures-macro v0.3.30 [INFO] [stderr] Checking bytemuck v1.17.1 [INFO] [stderr] Checking zerocopy v0.7.35 [INFO] [stderr] Checking digest v0.10.7 [INFO] [stderr] Compiling parking_lot_core v0.9.10 [INFO] [stderr] Compiling semver v1.0.23 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Compiling thiserror-impl v1.0.63 [INFO] [stderr] Compiling rustversion v1.0.17 [INFO] [stderr] Compiling strsim v0.11.1 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking safe_arch v0.7.2 [INFO] [stderr] Compiling fnv v1.0.7 [INFO] [stderr] Checking scopeguard v1.2.0 [INFO] [stderr] Checking unicode-properties v0.1.2 [INFO] [stderr] Compiling ident_case v1.0.1 [INFO] [stderr] Checking iana-time-zone v0.1.60 [INFO] [stderr] Checking chrono v0.4.38 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling darling_core v0.20.10 [INFO] [stderr] Checking stringprep v0.1.5 [INFO] [stderr] Checking sha2 v0.10.8 [INFO] [stderr] Checking md-5 v0.10.6 [INFO] [stderr] Checking hmac v0.12.1 [INFO] [stderr] Compiling libsqlite3-sys v0.28.0 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking crossbeam-channel v0.5.13 [INFO] [stderr] Compiling hashbrown v0.14.5 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Checking wide v0.7.28 [INFO] [stderr] Compiling equivalent v1.0.1 [INFO] [stderr] Checking fallible-iterator v0.2.0 [INFO] [stderr] Checking siphasher v0.3.11 [INFO] [stderr] Compiling memchr v2.7.4 [INFO] [stderr] Checking base64 v0.22.1 [INFO] [stderr] Checking ppv-lite86 v0.2.20 [INFO] [stderr] Checking phf_shared v0.11.2 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking futures-util v0.3.30 [INFO] [stderr] Checking noodles-bgzf v0.30.0 [INFO] [stderr] Checking regex-automata v0.4.7 [INFO] [stderr] Compiling rustc_version v0.4.1 [INFO] [stderr] Checking noodles-core v0.15.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Checking parking_lot v0.12.3 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling indexmap v2.4.0 [INFO] [stderr] Checking thiserror v1.0.63 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking utf8parse v0.2.2 [INFO] [stderr] Compiling winnow v0.6.18 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling toml_datetime v0.6.8 [INFO] [stderr] Checking anstyle-parse v0.2.5 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking hashlink v0.9.1 [INFO] [stderr] Compiling rstest_macros v0.22.0 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Checking noodles-fasta v0.39.0 [INFO] [stderr] Checking tokio-util v0.7.11 [INFO] [stderr] Checking phf v0.11.2 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling tracing-attributes v0.1.27 [INFO] [stderr] Compiling async-trait v0.1.81 [INFO] [stderr] Checking csv-core v0.1.11 [INFO] [stderr] Checking fallible-streaming-iterator v0.1.9 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking postgres-protocol v0.6.7 [INFO] [stderr] Checking simba v0.8.1 [INFO] [stderr] Checking is_terminal_polyfill v1.70.1 [INFO] [stderr] Checking fallible-iterator v0.3.0 [INFO] [stderr] Checking colorchoice v1.0.2 [INFO] [stderr] Checking bit-vec v0.8.0 [INFO] [stderr] Checking anstyle-query v1.1.1 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Checking whoami v1.5.1 [INFO] [stderr] Checking bit-set v0.8.0 [INFO] [stderr] Checking anstream v0.6.15 [INFO] [stderr] Checking postgres-types v0.2.7 [INFO] [stderr] Checking rusqlite v0.31.0 [INFO] [stderr] Checking noodles v0.76.0 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking ordered-float v4.2.2 [INFO] [stderr] Checking itertools v0.13.0 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking humantime v2.1.0 [INFO] [stderr] Checking bytecount v0.6.8 [INFO] [stderr] Checking regex v1.10.6 [INFO] [stderr] Checking web-time v1.1.0 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking strum v0.26.3 [INFO] [stderr] Compiling relative-path v1.9.3 [INFO] [stderr] Compiling glob v0.3.1 [INFO] [stderr] Checking env_filter v0.1.2 [INFO] [stderr] Compiling toml_edit v0.22.20 [INFO] [stderr] Checking cached_proc_macro_types v0.1.1 [INFO] [stderr] Checking env_logger v0.11.5 [INFO] [stderr] Checking tracing v0.1.40 [INFO] [stderr] Compiling darling_macro v0.20.10 [INFO] [stderr] Checking nom v7.1.3 [INFO] [stderr] Checking plotters v0.3.6 [INFO] [stderr] Checking quick_cache v0.6.5 [INFO] [stderr] Checking console v0.15.8 [INFO] [stderr] Checking seqrepo v0.10.3 [INFO] [stderr] Compiling test-log-macros v0.2.16 [INFO] [stderr] Checking serde v1.0.209 [INFO] [stderr] Compiling darling v0.20.10 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking yansi v0.5.1 [INFO] [stderr] Checking linked-hash-map v0.5.6 [INFO] [stderr] Checking futures-executor v0.3.30 [INFO] [stderr] Compiling cached_proc_macro v0.23.0 [INFO] [stderr] Checking tokio-postgres v0.7.11 [INFO] [stderr] Checking similar v2.6.0 [INFO] [stderr] Checking futures v0.3.30 [INFO] [stderr] Checking rustc-hash v2.0.0 [INFO] [stderr] Checking diff v0.1.13 [INFO] [stderr] Checking base16ct v0.2.0 [INFO] [stderr] Checking test-log v0.2.16 [INFO] [stderr] Checking pretty_assertions v1.4.0 [INFO] [stderr] Checking cached v0.53.1 [INFO] [stderr] Compiling proc-macro-crate v3.2.0 [INFO] [stderr] Checking postgres v0.19.8 [INFO] [stderr] Checking serde_json v1.0.127 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking csv v1.3.0 [INFO] [stderr] Checking multimap v0.10.0 [INFO] [stderr] Checking ciborium v0.2.2 [INFO] [stderr] Checking insta v1.39.0 [INFO] [stderr] Checking petgraph v0.6.5 [INFO] [stderr] Checking biocommons-bioutils v0.1.4 [INFO] [stderr] Checking tinytemplate v1.2.1 [INFO] [stderr] Checking nalgebra v0.32.6 [INFO] [stderr] Checking criterion v0.5.1 [INFO] [stderr] Checking rstest v0.22.0 [INFO] [stderr] Checking statrs v0.17.1 [INFO] [stderr] Checking bio v2.0.1 [INFO] [stderr] Checking hgvs v0.17.2 (/opt/rustwide/workdir) [INFO] [stdout] warning: unexpected `cfg` condition name: `deserialization_tests` [INFO] [stdout] --> src/data/cdot/json.rs:1164:11 [INFO] [stdout] | [INFO] [stdout] 1164 | #[cfg(deserialization_tests)] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = help: expected names are: `clippy`, `debug_assertions`, `doc`, `docsrs`, `doctest`, `feature`, `miri`, `overflow_checks`, `panic`, `proc_macro`, `relocation_model`, `rustfmt`, `sanitize`, `sanitizer_cfi_generalize_pointers`, `sanitizer_cfi_normalize_integers`, `target_abi`, `target_arch`, `target_endian`, `target_env`, `target_family`, `target_feature`, `target_has_atomic`, `target_has_atomic_equal_alignment`, `target_has_atomic_load_store`, `target_os`, `target_pointer_width`, `target_thread_local`, `target_vendor`, `test`, `ub_checks`, `unix`, and `windows` [INFO] [stdout] = help: consider using a Cargo feature instead [INFO] [stdout] = help: or consider adding in `Cargo.toml` the `check-cfg` lint config for the lint: [INFO] [stdout] [lints.rust] [INFO] [stdout] unexpected_cfgs = { level = "warn", check-cfg = ['cfg(deserialization_tests)'] } [INFO] [stdout] = help: or consider adding `println!("cargo::rustc-check-cfg=cfg(deserialization_tests)");` to the top of the `build.rs` [INFO] [stdout] = note: see for more information about checking conditional configuration [INFO] [stdout] = note: `#[warn(unexpected_cfgs)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: fields `description` and `alternatives` are never read [INFO] [stdout] --> src/mapper/variant.rs:1802:17 [INFO] [stdout] | [INFO] [stdout] 1794 | pub struct Record { [INFO] [stdout] | ------ fields in this struct [INFO] [stdout] ... [INFO] [stdout] 1802 | pub description: Option, [INFO] [stdout] | ^^^^^^^^^^^ [INFO] [stdout] 1803 | pub alternatives: Option, [INFO] [stdout] | ^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `Record` has a derived impl for the trait `Debug`, but this is intentionally ignored during dead code analysis [INFO] [stdout] = note: `#[warn(dead_code)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: 2 warnings emitted [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 22.66s [INFO] running `Command { std: "docker" "inspect" "4b0b5167c8696cf4b90cb376d7294f0f7c2839ddf79aee2e18bc6e6eba528b81", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4b0b5167c8696cf4b90cb376d7294f0f7c2839ddf79aee2e18bc6e6eba528b81", kill_on_drop: false }` [INFO] [stdout] 4b0b5167c8696cf4b90cb376d7294f0f7c2839ddf79aee2e18bc6e6eba528b81