[INFO] cloning repository https://github.com/ormorni/bio_utils
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ormorni/bio_utils" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Formorni%2Fbio_utils", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Formorni%2Fbio_utils'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] c41f1e42db2a238633814bed7e64f05c652fe7fa
[INFO] checking ormorni/bio_utils against master#1f12b9b0fdbe735968ac002792a720f0ba4faca6 for crater-rollup-uwu
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Formorni%2Fbio_utils" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/ormorni/bio_utils on toolchain 1f12b9b0fdbe735968ac002792a720f0ba4faca6
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1f12b9b0fdbe735968ac002792a720f0ba4faca6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/ormorni/bio_utils
[INFO] finished tweaking git repo https://github.com/ormorni/bio_utils
[INFO] tweaked toml for git repo https://github.com/ormorni/bio_utils written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/ormorni/bio_utils already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1f12b9b0fdbe735968ac002792a720f0ba4faca6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded strength_reduce v0.2.3
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+1f12b9b0fdbe735968ac002792a720f0ba4faca6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 437317c0263a2e73c76b4577d130e9f3c0d00441bee210f6c46248166e9be6cf
[INFO] running `Command { std: "docker" "start" "-a" "437317c0263a2e73c76b4577d130e9f3c0d00441bee210f6c46248166e9be6cf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "437317c0263a2e73c76b4577d130e9f3c0d00441bee210f6c46248166e9be6cf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "437317c0263a2e73c76b4577d130e9f3c0d00441bee210f6c46248166e9be6cf", kill_on_drop: false }`
[INFO] [stdout] 437317c0263a2e73c76b4577d130e9f3c0d00441bee210f6c46248166e9be6cf
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+1f12b9b0fdbe735968ac002792a720f0ba4faca6" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] d599df3713d023bba36ac3b32b7f49c485dda5cac8bc8c35a9d927642efbc6a7
[INFO] running `Command { std: "docker" "start" "-a" "d599df3713d023bba36ac3b32b7f49c485dda5cac8bc8c35a9d927642efbc6a7", kill_on_drop: false }`
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[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]    Compiling libc v0.2.132
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling crossbeam-utils v0.8.11
[INFO] [stderr]     Checking once_cell v1.14.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.43
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.10
[INFO] [stderr]    Compiling quote v1.0.21
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[INFO] [stderr]     Checking scopeguard v1.1.0
[INFO] [stderr]    Compiling syn v1.0.99
[INFO] [stderr]    Compiling memoffset v0.6.5
[INFO] [stderr]     Checking bytemuck v1.12.1
[INFO] [stderr]    Compiling rayon-core v1.9.3
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling num-rational v0.4.1
[INFO] [stderr]     Checking ppv-lite86 v0.2.16
[INFO] [stderr]     Checking strength_reduce v0.2.3
[INFO] [stderr]    Compiling typenum v1.15.0
[INFO] [stderr]     Checking either v1.8.0
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[INFO] [stderr]     Checking rustfft v6.0.1
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[INFO] [stderr]     Checking realfft v3.0.1
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[INFO] [stderr]     Checking bio_utils v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `Lines`
[INFO] [stdout]  --> src/alignment/parsers.rs:2:64
[INFO] [stdout]   |
[INFO] [stdout] 2 | use std::io::{BufRead, BufReader, BufWriter, Error, ErrorKind, Lines, Read, Write};
[INFO] [stdout]   |                                                                ^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Float`
[INFO] [stdout]  --> src/distributions/conv.rs:3:27
[INFO] [stdout]   |
[INFO] [stdout] 3 | use realfft::num_traits::{Float, FromPrimitive, Zero};
[INFO] [stdout]   |                           ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Lines`
[INFO] [stdout]  --> src/alignment/parsers.rs:2:64
[INFO] [stdout]   |
[INFO] [stdout] 2 | use std::io::{BufRead, BufReader, BufWriter, Error, ErrorKind, Lines, Read, Write};
[INFO] [stdout]   |                                                                ^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: `#[warn(unused_imports)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `Float`
[INFO] [stdout]  --> src/distributions/conv.rs:3:27
[INFO] [stdout]   |
[INFO] [stdout] 3 | use realfft::num_traits::{Float, FromPrimitive, Zero};
[INFO] [stdout]   |                           ^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `name_length`
[INFO] [stdout]   --> src/alignment/parsers.rs:86:17
[INFO] [stdout]    |
[INFO] [stdout] 86 |             let name_length = reader.read_until(b'\n', &mut self.buf).unwrap();
[INFO] [stdout]    |                 ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_name_length`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: enum `FastaIterState` is never used
[INFO] [stdout]   --> src/alignment/parsers.rs:43:6
[INFO] [stdout]    |
[INFO] [stdout] 43 | enum FastaIterState {
[INFO] [stdout]    |      ^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused variable: `name_length`
[INFO] [stdout]   --> src/alignment/parsers.rs:86:17
[INFO] [stdout]    |
[INFO] [stdout] 86 |             let name_length = reader.read_until(b'\n', &mut self.buf).unwrap();
[INFO] [stdout]    |                 ^^^^^^^^^^^ help: if this is intentional, prefix it with an underscore: `_name_length`
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_variables)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: enum `FastaIterState` is never used
[INFO] [stdout]   --> src/alignment/parsers.rs:43:6
[INFO] [stdout]    |
[INFO] [stdout] 43 | enum FastaIterState {
[INFO] [stdout]    |      ^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 4 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 4 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [optimized + debuginfo] target(s) in 8.79s
[INFO] running `Command { std: "docker" "inspect" "d599df3713d023bba36ac3b32b7f49c485dda5cac8bc8c35a9d927642efbc6a7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d599df3713d023bba36ac3b32b7f49c485dda5cac8bc8c35a9d927642efbc6a7", kill_on_drop: false }`
[INFO] [stdout] d599df3713d023bba36ac3b32b7f49c485dda5cac8bc8c35a9d927642efbc6a7