[INFO] cloning repository https://github.com/heathsc/ont_align_stats
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/heathsc/ont_align_stats" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fheathsc%2Font_align_stats", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fheathsc%2Font_align_stats'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 11baf25b01df103cc5c55685f30ff05cba155353
[INFO] checking heathsc/ont_align_stats against master#1f12b9b0fdbe735968ac002792a720f0ba4faca6 for crater-rollup-uwu
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fheathsc%2Font_align_stats" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/heathsc/ont_align_stats on toolchain 1f12b9b0fdbe735968ac002792a720f0ba4faca6
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1f12b9b0fdbe735968ac002792a720f0ba4faca6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/heathsc/ont_align_stats
[INFO] finished tweaking git repo https://github.com/heathsc/ont_align_stats
[INFO] tweaked toml for git repo https://github.com/heathsc/ont_align_stats written to /workspace/builds/worker-4-tc1/source/Cargo.toml
[INFO] crate git repo https://github.com/heathsc/ont_align_stats already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1f12b9b0fdbe735968ac002792a720f0ba4faca6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]     Updating git repository `https://github.com/heathsc/r_htslib.git`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded compress_io v0.5.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+1f12b9b0fdbe735968ac002792a720f0ba4faca6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 588aea1cfebfef451e36a7beb22822cecd932cbde47513b3bd02184c40aa705c
[INFO] running `Command { std: "docker" "start" "-a" "588aea1cfebfef451e36a7beb22822cecd932cbde47513b3bd02184c40aa705c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "588aea1cfebfef451e36a7beb22822cecd932cbde47513b3bd02184c40aa705c", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "588aea1cfebfef451e36a7beb22822cecd932cbde47513b3bd02184c40aa705c", kill_on_drop: false }`
[INFO] [stdout] 588aea1cfebfef451e36a7beb22822cecd932cbde47513b3bd02184c40aa705c
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+1f12b9b0fdbe735968ac002792a720f0ba4faca6" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] efeb8532a585047695d9fa5ed1233bb7b7cf7b6fe8b2028997b5815dca9053f9
[INFO] running `Command { std: "docker" "start" "-a" "efeb8532a585047695d9fa5ed1233bb7b7cf7b6fe8b2028997b5815dca9053f9", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.154
[INFO] [stderr]    Compiling proc-macro2 v1.0.82
[INFO] [stderr]    Compiling unicode-ident v1.0.12
[INFO] [stderr]    Compiling autocfg v1.3.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.19
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]     Checking once_cell v1.19.0
[INFO] [stderr]    Compiling rustix v0.38.34
[INFO] [stderr]    Compiling serde v1.0.202
[INFO] [stderr]     Checking bitflags v2.5.0
[INFO] [stderr]     Checking linux-raw-sys v0.4.13
[INFO] [stderr]    Compiling anyhow v1.0.83
[INFO] [stderr]     Checking memchr v2.7.2
[INFO] [stderr]     Checking fastrand v2.1.0
[INFO] [stderr]     Checking iana-time-zone v0.1.60
[INFO] [stderr]    Compiling serde_json v1.0.117
[INFO] [stderr]     Checking termcolor v1.1.3
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[INFO] [stderr]     Checking bitflags v1.3.2
[INFO] [stderr]     Checking itoa v1.0.11
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling indexmap v1.9.3
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[INFO] [stderr]     Checking num_cpus v1.16.0
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[INFO] [stderr]     Checking stderrlog v0.6.0
[INFO] [stderr]     Checking tempfile v3.10.1
[INFO] [stderr]     Checking compress_io v0.5.0
[INFO] [stderr]    Compiling serde_derive v1.0.202
[INFO] [stderr]     Checking sysinfo v0.30.12
[INFO] [stderr]    Compiling c2rust-bitfields-derive v0.2.1
[INFO] [stderr]     Checking c2rust-bitfields v0.3.0
[INFO] [stderr]     Checking r_htslib v0.14.0 (https://github.com/heathsc/r_htslib.git#9f8544ef)
[INFO] [stderr]     Checking ont_align_stats v0.13.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: methods `ctg_regions_length` and `total_regions_Length` are never used
[INFO] [stdout]    --> src/regions.rs:426:12
[INFO] [stdout]     |
[INFO] [stdout] 162 | impl Regions {
[INFO] [stdout]     | ------------ methods in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 426 |     pub fn ctg_regions_length(&self, ctg: &str) -> Option<usize> {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 437 |     pub fn total_regions_Length(&self) -> usize {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `total_regions_Length` should have a snake case name
[INFO] [stdout]    --> src/regions.rs:437:12
[INFO] [stdout]     |
[INFO] [stdout] 437 |     pub fn total_regions_Length(&self) -> usize {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `total_regions_length`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(non_snake_case)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: methods `ctg_regions_length` and `total_regions_Length` are never used
[INFO] [stdout]    --> src/regions.rs:426:12
[INFO] [stdout]     |
[INFO] [stdout] 162 | impl Regions {
[INFO] [stdout]     | ------------ methods in this implementation
[INFO] [stdout] ...
[INFO] [stdout] 426 |     pub fn ctg_regions_length(&self, ctg: &str) -> Option<usize> {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] ...
[INFO] [stdout] 437 |     pub fn total_regions_Length(&self) -> usize {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(dead_code)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: method `total_regions_Length` should have a snake case name
[INFO] [stdout]    --> src/regions.rs:437:12
[INFO] [stdout]     |
[INFO] [stdout] 437 |     pub fn total_regions_Length(&self) -> usize {
[INFO] [stdout]     |            ^^^^^^^^^^^^^^^^^^^^ help: convert the identifier to snake case: `total_regions_length`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(non_snake_case)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: 2 warnings emitted
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 6.60s
[INFO] running `Command { std: "docker" "inspect" "efeb8532a585047695d9fa5ed1233bb7b7cf7b6fe8b2028997b5815dca9053f9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "efeb8532a585047695d9fa5ed1233bb7b7cf7b6fe8b2028997b5815dca9053f9", kill_on_drop: false }`
[INFO] [stdout] efeb8532a585047695d9fa5ed1233bb7b7cf7b6fe8b2028997b5815dca9053f9