[INFO] cloning repository https://github.com/Adoni5/cnv_from_bam
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Adoni5/cnv_from_bam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Fcnv_from_bam", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Fcnv_from_bam'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 1fa01c617edc95a43ace2697cb798ba713d7837c
[INFO] checking Adoni5/cnv_from_bam against master#1f12b9b0fdbe735968ac002792a720f0ba4faca6 for crater-rollup-uwu
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Fcnv_from_bam" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] validating manifest of git repo https://github.com/Adoni5/cnv_from_bam on toolchain 1f12b9b0fdbe735968ac002792a720f0ba4faca6
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1f12b9b0fdbe735968ac002792a720f0ba4faca6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] started tweaking git repo https://github.com/Adoni5/cnv_from_bam
[INFO] finished tweaking git repo https://github.com/Adoni5/cnv_from_bam
[INFO] tweaked toml for git repo https://github.com/Adoni5/cnv_from_bam written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1f12b9b0fdbe735968ac002792a720f0ba4faca6" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 86 packages to latest compatible versions
[INFO] [stderr]       Adding bit-vec v0.6.3 (latest: v0.8.0)
[INFO] [stderr]       Adding encode_unicode v0.3.6 (latest: v1.0.0)
[INFO] [stderr]       Adding heck v0.4.1 (latest: v0.5.0)
[INFO] [stderr]       Adding noodles v0.59.0 (latest: v0.79.0)
[INFO] [stderr]       Adding noodles-bam v0.51.0 (latest: v0.66.0)
[INFO] [stderr]       Adding noodles-bgzf v0.25.0 (latest: v0.32.0)
[INFO] [stderr]       Adding noodles-core v0.12.0 (latest: v0.15.0)
[INFO] [stderr]       Adding noodles-csi v0.28.0 (latest: v0.37.0)
[INFO] [stderr]       Adding noodles-sam v0.48.0 (latest: v0.63.0)
[INFO] [stderr]       Adding pyo3 v0.20.3 (latest: v0.22.2)
[INFO] [stderr]       Adding pyo3-build-config v0.20.3 (latest: v0.22.2)
[INFO] [stderr]       Adding pyo3-ffi v0.20.3 (latest: v0.22.2)
[INFO] [stderr]       Adding pyo3-macros v0.20.3 (latest: v0.22.2)
[INFO] [stderr]       Adding pyo3-macros-backend v0.20.3 (latest: v0.22.2)
[INFO] [stderr]       Adding windows-sys v0.52.0 (latest: v0.59.0)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1f12b9b0fdbe735968ac002792a720f0ba4faca6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-csi v0.28.0
[INFO] [stderr]   Downloaded libdeflater v1.21.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.25.0
[INFO] [stderr]   Downloaded libdeflate-sys v1.21.0
[INFO] [stderr]   Downloaded noodles v0.59.0
[INFO] [stderr]   Downloaded noodles-bam v0.51.0
[INFO] [stderr]   Downloaded noodles-sam v0.48.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+1f12b9b0fdbe735968ac002792a720f0ba4faca6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ce3bf7c2e29da15202a8ab457b0fb188bc8a8bad11a4a18d1f2265ecc04a9686
[INFO] running `Command { std: "docker" "start" "-a" "ce3bf7c2e29da15202a8ab457b0fb188bc8a8bad11a4a18d1f2265ecc04a9686", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ce3bf7c2e29da15202a8ab457b0fb188bc8a8bad11a4a18d1f2265ecc04a9686", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ce3bf7c2e29da15202a8ab457b0fb188bc8a8bad11a4a18d1f2265ecc04a9686", kill_on_drop: false }`
[INFO] [stdout] ce3bf7c2e29da15202a8ab457b0fb188bc8a8bad11a4a18d1f2265ecc04a9686
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:923055f121b5182466d55868a8b05e67af8ba4a3a3f6bad814e953ca3cd3ac2a" "/opt/rustwide/cargo-home/bin/cargo" "+1f12b9b0fdbe735968ac002792a720f0ba4faca6" "check" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 42545c26d6bc9fc865b66646aee72fb73e933b8eafe90035c1b30b02022e80bf
[INFO] running `Command { std: "docker" "start" "-a" "42545c26d6bc9fc865b66646aee72fb73e933b8eafe90035c1b30b02022e80bf", kill_on_drop: false }`
[INFO] [stderr]    Compiling target-lexicon v0.12.16
[INFO] [stderr]    Compiling crossbeam-utils v0.8.20
[INFO] [stderr]    Compiling libc v0.2.158
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]     Checking static_assertions v1.1.0
[INFO] [stderr]    Compiling once_cell v1.19.0
[INFO] [stderr]    Compiling autocfg v1.3.0
[INFO] [stderr]     Checking adler2 v2.0.0
[INFO] [stderr]     Checking lexical-util v0.8.5
[INFO] [stderr]    Compiling proc-macro2 v1.0.86
[INFO] [stderr]    Compiling cc v1.1.15
[INFO] [stderr]     Checking miniz_oxide v0.8.0
[INFO] [stderr]     Checking crc32fast v1.4.2
[INFO] [stderr]    Compiling parking_lot_core v0.9.10
[INFO] [stderr]     Checking crossbeam-channel v0.5.13
[INFO] [stderr]     Checking lexical-parse-integer v0.8.6
[INFO] [stderr]     Checking flate2 v1.0.33
[INFO] [stderr]     Checking lexical-write-integer v0.8.5
[INFO] [stderr]     Checking bitflags v2.6.0
[INFO] [stderr]    Compiling pyo3-build-config v0.20.3
[INFO] [stderr]     Checking equivalent v1.0.1
[INFO] [stderr]     Checking hashbrown v0.14.5
[INFO] [stderr]     Checking bytes v1.7.1
[INFO] [stderr]    Compiling quote v1.0.37
[INFO] [stderr]     Checking lexical-parse-float v0.8.5
[INFO] [stderr]     Checking lexical-write-float v0.8.5
[INFO] [stderr]     Checking crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling lock_api v0.4.12
[INFO] [stderr]     Checking indexmap v2.4.0
[INFO] [stderr]     Checking noodles-core v0.12.0
[INFO] [stderr]     Checking smallvec v1.13.2
[INFO] [stderr]    Compiling cfg_aliases v0.2.1
[INFO] [stderr]     Checking bit-vec v0.6.3
[INFO] [stderr]    Compiling portable-atomic v1.7.0
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling nix v0.29.0
[INFO] [stderr]    Compiling libdeflate-sys v1.21.0
[INFO] [stderr]     Checking lexical-core v0.8.5
[INFO] [stderr]     Checking crossbeam-deque v0.8.5
[INFO] [stderr]    Compiling syn v2.0.76
[INFO] [stderr]    Compiling memoffset v0.9.1
[INFO] [stderr]     Checking scopeguard v1.2.0
[INFO] [stderr]     Checking memchr v2.7.4
[INFO] [stderr]     Checking unicode-width v0.1.13
[INFO] [stderr]     Checking lazy_static v1.5.0
[INFO] [stderr]     Checking either v1.13.0
[INFO] [stderr]     Checking console v0.15.8
[INFO] [stderr]     Checking parking_lot v0.12.3
[INFO] [stderr]     Checking rayon v1.10.0
[INFO] [stderr]    Compiling indoc v2.0.5
[INFO] [stderr]     Checking unindent v0.2.3
[INFO] [stderr]     Checking natord v1.0.9
[INFO] [stderr]     Checking fnv v1.0.7
[INFO] [stderr]     Checking log v0.4.22
[INFO] [stderr]    Compiling pyo3-ffi v0.20.3
[INFO] [stderr]    Compiling pyo3 v0.20.3
[INFO] [stderr]     Checking ctrlc v3.4.5
[INFO] [stderr]     Checking indicatif v0.17.8
[INFO] [stderr]     Checking libdeflater v1.21.0
[INFO] [stderr]     Checking noodles-bgzf v0.25.0
[INFO] [stderr]     Checking noodles-csi v0.28.0
[INFO] [stderr]    Compiling pyo3-macros-backend v0.20.3
[INFO] [stderr]     Checking noodles-sam v0.48.0
[INFO] [stderr]     Checking noodles-bam v0.51.0
[INFO] [stderr]    Compiling pyo3-macros v0.20.3
[INFO] [stderr]     Checking noodles v0.59.0
[INFO] [stderr]     Checking cnv_from_bam v0.4.4 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 7.54s
[INFO] running `Command { std: "docker" "inspect" "42545c26d6bc9fc865b66646aee72fb73e933b8eafe90035c1b30b02022e80bf", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "42545c26d6bc9fc865b66646aee72fb73e933b8eafe90035c1b30b02022e80bf", kill_on_drop: false }`
[INFO] [stdout] 42545c26d6bc9fc865b66646aee72fb73e933b8eafe90035c1b30b02022e80bf