[INFO] updating cached repository mttmartin/anneal_predictor
[INFO] running `"git" "fetch" "--all"`
[INFO] [stdout] Fetching origin
[INFO] [stderr] From git://github.com/mttmartin/anneal_predictor
[INFO] [stderr]  * branch            HEAD       -> FETCH_HEAD
[INFO] running `"git" "clone" "work/cache/sources/gh/mttmartin/anneal_predictor" "work/ex/clippy-test-run/sources/stable/gh/mttmartin/anneal_predictor"`
[INFO] [stderr] Cloning into 'work/ex/clippy-test-run/sources/stable/gh/mttmartin/anneal_predictor'...
[INFO] [stderr] done.
[INFO] running `"git" "clone" "work/cache/sources/gh/mttmartin/anneal_predictor" "work/ex/clippy-test-run/sources/stable+rustflags=-Dclippy%3A%3Ainto_iter_on_array/gh/mttmartin/anneal_predictor"`
[INFO] [stderr] Cloning into 'work/ex/clippy-test-run/sources/stable+rustflags=-Dclippy%3A%3Ainto_iter_on_array/gh/mttmartin/anneal_predictor'...
[INFO] [stderr] done.
[INFO] running `"git" "rev-parse" "HEAD"`
[INFO] [stdout] 8015bc6eaafedea32d296c1982070e2073c44112
[INFO] sha for GitHub repo mttmartin/anneal_predictor: 8015bc6eaafedea32d296c1982070e2073c44112
[INFO] validating manifest of mttmartin/anneal_predictor on toolchain stable
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+stable" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] validating manifest of mttmartin/anneal_predictor on toolchain stable+rustflags=-Dclippy::into_iter_on_array
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+stable" "read-manifest" "--manifest-path" "Cargo.toml"`
[INFO] started frobbing mttmartin/anneal_predictor
[INFO] finished frobbing mttmartin/anneal_predictor
[INFO] frobbed toml for mttmartin/anneal_predictor written to work/ex/clippy-test-run/sources/stable/gh/mttmartin/anneal_predictor/Cargo.toml
[INFO] started frobbing mttmartin/anneal_predictor
[INFO] finished frobbing mttmartin/anneal_predictor
[INFO] frobbed toml for mttmartin/anneal_predictor written to work/ex/clippy-test-run/sources/stable+rustflags=-Dclippy%3A%3Ainto_iter_on_array/gh/mttmartin/anneal_predictor/Cargo.toml
[INFO] crate mttmartin/anneal_predictor has a lockfile. skipping
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+stable" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] running `"/mnt/big/crater/work/local/cargo-home/bin/cargo" "+stable" "fetch" "--locked" "--manifest-path" "Cargo.toml"`
[INFO] linting mttmartin/anneal_predictor against stable+rustflags=-Dclippy::into_iter_on_array for clippy-test-run
[INFO] running `"docker" "create" "-v" "/mnt/big/crater/work/local/target-dirs/clippy-test-run/worker-4/stable+rustflags=-Dclippy%3A%3Ainto_iter_on_array:/opt/crater/target:rw,Z" "-v" "/mnt/big/crater/work/ex/clippy-test-run/sources/stable+rustflags=-Dclippy%3A%3Ainto_iter_on_array/gh/mttmartin/anneal_predictor:/opt/crater/workdir:ro,Z" "-v" "/mnt/big/crater/work/local/cargo-home:/opt/crater/cargo-home:ro,Z" "-v" "/mnt/big/crater/work/local/rustup-home:/opt/crater/rustup-home:ro,Z" "-e" "USER_ID=1000" "-e" "SOURCE_DIR=/opt/crater/workdir" "-e" "MAP_USER_ID=1000" "-e" "CARGO_TARGET_DIR=/opt/crater/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid -Dclippy::into_iter_on_array" "-e" "CARGO_HOME=/opt/crater/cargo-home" "-e" "RUSTUP_HOME=/opt/crater/rustup-home" "-w" "/opt/crater/workdir" "-m" "1536M" "--network" "none" "rustops/crates-build-env" "/opt/crater/cargo-home/bin/cargo" "+stable" "clippy" "--frozen" "--all" "--all-targets"`
[INFO] [stdout] c62a42546c4b3a0d9e6e857c10b3abfadc34927a014c793c386d52b59945d715
[INFO] running `"docker" "start" "-a" "c62a42546c4b3a0d9e6e857c10b3abfadc34927a014c793c386d52b59945d715"`
[INFO] [stderr]     Checking anneal_predictor v0.1.0 (/opt/crater/workdir)
[INFO] [stderr] warning: returning the result of a let binding from a block. Consider returning the expression directly.
[INFO] [stderr]    --> src/main.rs:279:3
[INFO] [stderr]     |
[INFO] [stderr] 279 |         deltaG
[INFO] [stderr]     |         ^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: #[warn(clippy::let_and_return)] on by default
[INFO] [stderr] note: this expression can be directly returned
[INFO] [stderr]    --> src/main.rs:278:16
[INFO] [stderr]     |
[INFO] [stderr] 278 |         let deltaG = deltaH - self.temperature * deltaS;
[INFO] [stderr]     |                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#let_and_return
[INFO] [stderr] 
[INFO] [stderr] warning: returning the result of a let binding from a block. Consider returning the expression directly.
[INFO] [stderr]    --> src/main.rs:287:3
[INFO] [stderr]     |
[INFO] [stderr] 287 |         deltaGinit
[INFO] [stderr]     |         ^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr] note: this expression can be directly returned
[INFO] [stderr]    --> src/main.rs:286:20
[INFO] [stderr]     |
[INFO] [stderr] 286 |         let deltaGinit = deltaH - (self.temperature*deltaS);
[INFO] [stderr]     |                          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#let_and_return
[INFO] [stderr] 
[INFO] [stderr] warning: returning the result of a let binding from a block. Consider returning the expression directly.
[INFO] [stderr]    --> src/main.rs:292:3
[INFO] [stderr]     |
[INFO] [stderr] 292 |         deltaGinit
[INFO] [stderr]     |         ^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr] note: this expression can be directly returned
[INFO] [stderr]    --> src/main.rs:291:20
[INFO] [stderr]     |
[INFO] [stderr] 291 |         let deltaGinit = deltaH - (self.temperature*deltaS);
[INFO] [stderr]     |                          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#let_and_return
[INFO] [stderr] 
[INFO] [stderr] warning: returning the result of a let binding from a block. Consider returning the expression directly.
[INFO] [stderr]    --> src/main.rs:279:3
[INFO] [stderr]     |
[INFO] [stderr] 279 |         deltaG
[INFO] [stderr]     |         ^^^^^^
[INFO] [stderr]     |
[INFO] [stderr]     = note: #[warn(clippy::let_and_return)] on by default
[INFO] [stderr] note: this expression can be directly returned
[INFO] [stderr]    --> src/main.rs:278:16
[INFO] [stderr]     |
[INFO] [stderr] 278 |         let deltaG = deltaH - self.temperature * deltaS;
[INFO] [stderr]     |                      ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#let_and_return
[INFO] [stderr] 
[INFO] [stderr] warning: returning the result of a let binding from a block. Consider returning the expression directly.
[INFO] [stderr]    --> src/main.rs:287:3
[INFO] [stderr]     |
[INFO] [stderr] 287 |         deltaGinit
[INFO] [stderr]     |         ^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr] note: this expression can be directly returned
[INFO] [stderr]    --> src/main.rs:286:20
[INFO] [stderr]     |
[INFO] [stderr] 286 |         let deltaGinit = deltaH - (self.temperature*deltaS);
[INFO] [stderr]     |                          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#let_and_return
[INFO] [stderr] 
[INFO] [stderr] warning: returning the result of a let binding from a block. Consider returning the expression directly.
[INFO] [stderr]    --> src/main.rs:292:3
[INFO] [stderr]     |
[INFO] [stderr] 292 |         deltaGinit
[INFO] [stderr]     |         ^^^^^^^^^^
[INFO] [stderr]     |
[INFO] [stderr] note: this expression can be directly returned
[INFO] [stderr]    --> src/main.rs:291:20
[INFO] [stderr]     |
[INFO] [stderr] 291 |         let deltaGinit = deltaH - (self.temperature*deltaS);
[INFO] [stderr]     |                          ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]     = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#let_and_return
[INFO] [stderr] 
[INFO] [stderr] warning: method `deltaG_dinucleotide` should have a snake case name such as `delta_g_dinucleotide`
[INFO] [stderr]    --> src/main.rs:8:2
[INFO] [stderr]     |
[INFO] [stderr] 8   |       fn deltaG_dinucleotide(&self, substr1_initial: String, substr2_initial: String) -> f64 {
[INFO] [stderr]     |  _____^
[INFO] [stderr] 9   | |         let mut deltaS = 0.0;
[INFO] [stderr] 10  | |         let mut deltaH = 0.0;
[INFO] [stderr] 11  | |
[INFO] [stderr] ...   |
[INFO] [stderr] 279 | |         deltaG
[INFO] [stderr] 280 | |     }
[INFO] [stderr]     | |_____^
[INFO] [stderr]     |
[INFO] [stderr]     = note: #[warn(non_snake_case)] on by default
[INFO] [stderr] 
[INFO] [stderr] warning: the function has a cyclomatic complexity of 70
[INFO] [stderr]    --> src/main.rs:8:2
[INFO] [stderr]     |
[INFO] [stderr] 8   |       fn deltaG_dinucleotide(&self, substr1_initial: String, substr2_initial: String) -> f64 {
[INFO] [stderr]     |  _____^
[INFO] [stderr] 9   | |         let mut deltaS = 0.0;
[INFO] [stderr] 10  | |         let mut deltaH = 0.0;
[INFO] [stderr] 11  | |
[INFO] [stderr] ...   |
[INFO] [stderr] 279 | |         deltaG
[INFO] [stderr] 280 | |     }
[INFO] [stderr]     | |_____^
[INFO] [stderr]     |
[INFO] [stderr]     = note: #[warn(clippy::cyclomatic_complexity)] on by default
[INFO] [stderr]     = help: you could split it up into multiple smaller functions
[INFO] [stderr]     = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#cyclomatic_complexity
[INFO] [stderr] 
[INFO] [stderr] warning: method `deltaG_dinucleotide` should have a snake case name such as `delta_g_dinucleotide`
[INFO] [stderr]    --> src/main.rs:8:2
[INFO] [stderr]     |
[INFO] [stderr] 8   |       fn deltaG_dinucleotide(&self, substr1_initial: String, substr2_initial: String) -> f64 {
[INFO] [stderr]     |  _____^
[INFO] [stderr] 9   | |         let mut deltaS = 0.0;
[INFO] [stderr] 10  | |         let mut deltaH = 0.0;
[INFO] [stderr] 11  | |
[INFO] [stderr] ...   |
[INFO] [stderr] 279 | |         deltaG
[INFO] [stderr] 280 | |     }
[INFO] [stderr]     | |_____^
[INFO] [stderr]     |
[INFO] [stderr]     = note: #[warn(non_snake_case)] on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `if _ { .. } else { .. }` is an expression
[INFO] [stderr]   --> src/main.rs:13:3
[INFO] [stderr]    |
[INFO] [stderr] 13 |           let mut substr2 = substr2_initial.clone();
[INFO] [stderr]    |  _________^
[INFO] [stderr] 14 | |         if substr1 == "AC" || substr1 == "AG" || substr1 == "TG" || substr1 == "TC"  || substr1 == "CC" {
[INFO] [stderr] 15 | |             // Assuming that this is physically valid
[INFO] [stderr] 16 | |             // let t = s.chars().rev().collect::<String>();
[INFO] [stderr] 17 | |             substr1 = substr1_initial.chars().rev().collect::<String>();
[INFO] [stderr] 18 | |             substr2 = substr2_initial.chars().rev().collect::<String>();
[INFO] [stderr] 19 | |         }
[INFO] [stderr]    | |_________^ help: it is more idiomatic to write: `let <mut> substr2 = if substr1 == "AC" || substr1 == "AG" || substr1 == "TG" || substr1 == "TC"  || substr1 == "CC" { ..; substr2_initial.chars().rev().collect::<String>() } else { substr2_initial.clone() };`
[INFO] [stderr]    |
[INFO] [stderr]    = note: #[warn(clippy::useless_let_if_seq)] on by default
[INFO] [stderr]    = note: you might not need `mut` at all
[INFO] [stderr]    = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#useless_let_if_seq
[INFO] [stderr] 
[INFO] [stderr] warning: variable `deltaS` should have a snake case name such as `delta_s`
[INFO] [stderr]  --> src/main.rs:9:7
[INFO] [stderr]   |
[INFO] [stderr] 9 |         let mut deltaS = 0.0;
[INFO] [stderr]   |             ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `deltaH` should have a snake case name such as `delta_h`
[INFO] [stderr]   --> src/main.rs:10:7
[INFO] [stderr]    |
[INFO] [stderr] 10 |         let mut deltaH = 0.0;
[INFO] [stderr]    |             ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] error: this `if` has identical blocks
[INFO] [stderr]    --> src/main.rs:124:48
[INFO] [stderr]     |
[INFO] [stderr] 124 |           } else if substr1 == "CA" && substr2 == "GG" {
[INFO] [stderr]     |  ______________________________________________________^
[INFO] [stderr] 125 | |             deltaS = -9.6;
[INFO] [stderr] 126 | |             deltaH = -2.9;
[INFO] [stderr] 127 | |         } else if substr1 == "CG" && substr2 == "GA" {
[INFO] [stderr]     | |_________^
[INFO] [stderr]     |
[INFO] [stderr]     = note: #[deny(clippy::if_same_then_else)] on by default
[INFO] [stderr] note: same as this
[INFO] [stderr]    --> src/main.rs:121:48
[INFO] [stderr]     |
[INFO] [stderr] 121 |           } else if substr1 == "AG" && substr2 == "TA" {
[INFO] [stderr]     |  ______________________________________________________^
[INFO] [stderr] 122 | |             deltaS = -9.6;
[INFO] [stderr] 123 | |             deltaH = -2.9;
[INFO] [stderr] 124 | |         } else if substr1 == "CA" && substr2 == "GG" {
[INFO] [stderr]     | |_________^
[INFO] [stderr]     = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#if_same_then_else
[INFO] [stderr] 
[INFO] [stderr] error: this `if` has the same condition as a previous if
[INFO] [stderr]   --> src/main.rs:80:13
[INFO] [stderr]    |
[INFO] [stderr] 80 |         } else if substr1 == "GA" && substr2 == "CT" {
[INFO] [stderr]    |                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: #[deny(clippy::ifs_same_cond)] on by default
[INFO] [stderr] note: same as this
[INFO] [stderr]   --> src/main.rs:39:13
[INFO] [stderr]    |
[INFO] [stderr] 39 |         } else if substr1 == "GA" && substr2 == "CT" {
[INFO] [stderr]    |                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#ifs_same_cond
[INFO] [stderr] 
[INFO] [stderr] warning: the function has a cyclomatic complexity of 70
[INFO] [stderr]    --> src/main.rs:8:2
[INFO] [stderr]     |
[INFO] [stderr] 8   |       fn deltaG_dinucleotide(&self, substr1_initial: String, substr2_initial: String) -> f64 {
[INFO] [stderr]     |  _____^
[INFO] [stderr] 9   | |         let mut deltaS = 0.0;
[INFO] [stderr] 10  | |         let mut deltaH = 0.0;
[INFO] [stderr] 11  | |
[INFO] [stderr] ...   |
[INFO] [stderr] 279 | |         deltaG
[INFO] [stderr] 280 | |     }
[INFO] [stderr]     | |_____^
[INFO] [stderr]     |
[INFO] [stderr]     = note: #[warn(clippy::cyclomatic_complexity)] on by default
[INFO] [stderr]     = help: you could split it up into multiple smaller functions
[INFO] [stderr]     = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#cyclomatic_complexity
[INFO] [stderr] 
[INFO] [stderr] warning: manual implementation of an assign operation
[INFO] [stderr]    --> src/main.rs:277:3
[INFO] [stderr]     |
[INFO] [stderr] 277 |         deltaS = deltaS/1000.0;
[INFO] [stderr]     |         ^^^^^^^^^^^^^^^^^^^^^^ help: replace it with: `deltaS /= 1000.0`
[INFO] [stderr]     |
[INFO] [stderr]     = note: #[warn(clippy::assign_op_pattern)] on by default
[INFO] [stderr]     = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#assign_op_pattern
[INFO] [stderr] 
[INFO] [stderr] warning: variable `deltaG` should have a snake case name such as `delta_g`
[INFO] [stderr]    --> src/main.rs:278:7
[INFO] [stderr]     |
[INFO] [stderr] 278 |         let deltaG = deltaH - self.temperature * deltaS;
[INFO] [stderr]     |             ^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: method `initiation_termination_deltaG` should have a snake case name such as `initiation_termination_delta_g`
[INFO] [stderr]    --> src/main.rs:282:1
[INFO] [stderr]     |
[INFO] [stderr] 282 | / fn initiation_termination_deltaG(&self, template_nucleotide: String, oligo_nucleotide: String) -> f64 {
[INFO] [stderr] 283 | |     if (template_nucleotide == "A" && oligo_nucleotide == "T") || (template_nucleotide == "T" && oligo_nucleotide == "A") {
[INFO] [stderr] 284 | |         let deltaH = 9.62;
[INFO] [stderr] 285 | |         let deltaS = 17.15/1000.0;
[INFO] [stderr] ...   |
[INFO] [stderr] 296 | |     }
[INFO] [stderr] 297 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `deltaH` should have a snake case name such as `delta_h`
[INFO] [stderr]    --> src/main.rs:284:7
[INFO] [stderr]     |
[INFO] [stderr] 284 |         let deltaH = 9.62;
[INFO] [stderr]     |             ^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `deltaS` should have a snake case name such as `delta_s`
[INFO] [stderr]    --> src/main.rs:285:7
[INFO] [stderr]     |
[INFO] [stderr] 285 |         let deltaS = 17.15/1000.0;
[INFO] [stderr]     |             ^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `deltaGinit` should have a snake case name such as `delta_ginit`
[INFO] [stderr]    --> src/main.rs:286:7
[INFO] [stderr]     |
[INFO] [stderr] 286 |         let deltaGinit = deltaH - (self.temperature*deltaS);
[INFO] [stderr]     |             ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `deltaH` should have a snake case name such as `delta_h`
[INFO] [stderr]    --> src/main.rs:289:7
[INFO] [stderr]     |
[INFO] [stderr] 289 |         let deltaH = 0.4184;
[INFO] [stderr]     |             ^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `deltaS` should have a snake case name such as `delta_s`
[INFO] [stderr]    --> src/main.rs:290:7
[INFO] [stderr]     |
[INFO] [stderr] 290 |         let deltaS = -11.72/1000.0;
[INFO] [stderr]     |             ^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `deltaGinit` should have a snake case name such as `delta_ginit`
[INFO] [stderr]    --> src/main.rs:291:7
[INFO] [stderr]     |
[INFO] [stderr] 291 |         let deltaGinit = deltaH - (self.temperature*deltaS);
[INFO] [stderr]     |             ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: method `calc_deltaG` should have a snake case name such as `calc_delta_g`
[INFO] [stderr]    --> src/main.rs:299:1
[INFO] [stderr]     |
[INFO] [stderr] 299 | / fn calc_deltaG(&self, template_piece: String) -> f64{
[INFO] [stderr] 300 | |     let mut deltaG = 0.0;
[INFO] [stderr] 301 | |     println!("template piece: {:?}", template_piece);
[INFO] [stderr] 302 | |     for i in 0..(self.oligo.len()-1) {
[INFO] [stderr] ...   |
[INFO] [stderr] 317 | |     deltaG
[INFO] [stderr] 318 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `deltaG` should have a snake case name such as `delta_g`
[INFO] [stderr]    --> src/main.rs:300:6
[INFO] [stderr]     |
[INFO] [stderr] 300 |     let mut deltaG = 0.0;
[INFO] [stderr]     |         ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `initiation_deltaG` should have a snake case name such as `initiation_delta_g`
[INFO] [stderr]    --> src/main.rs:303:7
[INFO] [stderr]     |
[INFO] [stderr] 303 |         let mut initiation_deltaG = 0.0;
[INFO] [stderr]     |             ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `dinucleotide_deltaG` should have a snake case name such as `dinucleotide_delta_g`
[INFO] [stderr]    --> src/main.rs:306:7
[INFO] [stderr]     |
[INFO] [stderr] 306 |         let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone());
[INFO] [stderr]     |             ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: method `lowest_deltaG` should have a snake case name such as `lowest_delta_g`
[INFO] [stderr]    --> src/main.rs:320:2
[INFO] [stderr]     |
[INFO] [stderr] 320 |       fn lowest_deltaG(&self) -> f64 {
[INFO] [stderr]     |  _____^
[INFO] [stderr] 321 | |         let mut lowestDeltaG = 0.0;
[INFO] [stderr] 322 | |         for i in 0..(self.template.len() - self.oligo.len()) {
[INFO] [stderr] 323 | |             let template_piece = self.template[i..(self.oligo.len()+i)].to_string();
[INFO] [stderr] ...   |
[INFO] [stderr] 329 | |         lowestDeltaG
[INFO] [stderr] 330 | |     }
[INFO] [stderr]     | |_____^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `lowestDeltaG` should have a snake case name such as `lowest_delta_g`
[INFO] [stderr]    --> src/main.rs:321:7
[INFO] [stderr]     |
[INFO] [stderr] 321 |         let mut lowestDeltaG = 0.0;
[INFO] [stderr]     |             ^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `currentDeltaG` should have a snake case name such as `current_delta_g`
[INFO] [stderr]    --> src/main.rs:324:8
[INFO] [stderr]     |
[INFO] [stderr] 324 |             let currentDeltaG = self.calc_deltaG(template_piece);
[INFO] [stderr]     |                 ^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `lowest_delta_G` should have a snake case name such as `lowest_delta_g`
[INFO] [stderr]    --> src/main.rs:339:6
[INFO] [stderr]     |
[INFO] [stderr] 339 |     let lowest_delta_G = simulation.lowest_deltaG();
[INFO] [stderr]     |         ^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] error: aborting due to 2 previous errors
[INFO] [stderr] 
[INFO] [stderr] error: Could not compile `anneal_predictor`.
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] warning: `if _ { .. } else { .. }` is an expression
[INFO] [stderr]   --> src/main.rs:13:3
[INFO] [stderr]    |
[INFO] [stderr] 13 |           let mut substr2 = substr2_initial.clone();
[INFO] [stderr]    |  _________^
[INFO] [stderr] 14 | |         if substr1 == "AC" || substr1 == "AG" || substr1 == "TG" || substr1 == "TC"  || substr1 == "CC" {
[INFO] [stderr] 15 | |             // Assuming that this is physically valid
[INFO] [stderr] 16 | |             // let t = s.chars().rev().collect::<String>();
[INFO] [stderr] 17 | |             substr1 = substr1_initial.chars().rev().collect::<String>();
[INFO] [stderr] 18 | |             substr2 = substr2_initial.chars().rev().collect::<String>();
[INFO] [stderr] 19 | |         }
[INFO] [stderr]    | |_________^ help: it is more idiomatic to write: `let <mut> substr2 = if substr1 == "AC" || substr1 == "AG" || substr1 == "TG" || substr1 == "TC"  || substr1 == "CC" { ..; substr2_initial.chars().rev().collect::<String>() } else { substr2_initial.clone() };`
[INFO] [stderr]    |
[INFO] [stderr]    = note: #[warn(clippy::useless_let_if_seq)] on by default
[INFO] [stderr]    = note: you might not need `mut` at all
[INFO] [stderr]    = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#useless_let_if_seq
[INFO] [stderr] 
[INFO] [stderr] warning: variable `deltaS` should have a snake case name such as `delta_s`
[INFO] [stderr]  --> src/main.rs:9:7
[INFO] [stderr]   |
[INFO] [stderr] 9 |         let mut deltaS = 0.0;
[INFO] [stderr]   |             ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `deltaH` should have a snake case name such as `delta_h`
[INFO] [stderr]   --> src/main.rs:10:7
[INFO] [stderr]    |
[INFO] [stderr] 10 |         let mut deltaH = 0.0;
[INFO] [stderr]    |             ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] error: this `if` has identical blocks
[INFO] [stderr]    --> src/main.rs:124:48
[INFO] [stderr]     |
[INFO] [stderr] 124 |           } else if substr1 == "CA" && substr2 == "GG" {
[INFO] [stderr]     |  ______________________________________________________^
[INFO] [stderr] 125 | |             deltaS = -9.6;
[INFO] [stderr] 126 | |             deltaH = -2.9;
[INFO] [stderr] 127 | |         } else if substr1 == "CG" && substr2 == "GA" {
[INFO] [stderr]     | |_________^
[INFO] [stderr]     |
[INFO] [stderr]     = note: #[deny(clippy::if_same_then_else)] on by default
[INFO] [stderr] note: same as this
[INFO] [stderr]    --> src/main.rs:121:48
[INFO] [stderr]     |
[INFO] [stderr] 121 |           } else if substr1 == "AG" && substr2 == "TA" {
[INFO] [stderr]     |  ______________________________________________________^
[INFO] [stderr] 122 | |             deltaS = -9.6;
[INFO] [stderr] 123 | |             deltaH = -2.9;
[INFO] [stderr] 124 | |         } else if substr1 == "CA" && substr2 == "GG" {
[INFO] [stderr]     | |_________^
[INFO] [stderr]     = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#if_same_then_else
[INFO] [stderr] 
[INFO] [stderr] error: this `if` has the same condition as a previous if
[INFO] [stderr]   --> src/main.rs:80:13
[INFO] [stderr]    |
[INFO] [stderr] 80 |         } else if substr1 == "GA" && substr2 == "CT" {
[INFO] [stderr]    |                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: #[deny(clippy::ifs_same_cond)] on by default
[INFO] [stderr] note: same as this
[INFO] [stderr]   --> src/main.rs:39:13
[INFO] [stderr]    |
[INFO] [stderr] 39 |         } else if substr1 == "GA" && substr2 == "CT" {
[INFO] [stderr]    |                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#ifs_same_cond
[INFO] [stderr] 
[INFO] [stderr] warning: manual implementation of an assign operation
[INFO] [stderr]    --> src/main.rs:277:3
[INFO] [stderr]     |
[INFO] [stderr] 277 |         deltaS = deltaS/1000.0;
[INFO] [stderr]     |         ^^^^^^^^^^^^^^^^^^^^^^ help: replace it with: `deltaS /= 1000.0`
[INFO] [stderr]     |
[INFO] [stderr]     = note: #[warn(clippy::assign_op_pattern)] on by default
[INFO] [stderr]     = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#assign_op_pattern
[INFO] [stderr] 
[INFO] [stderr] warning: variable `deltaG` should have a snake case name such as `delta_g`
[INFO] [stderr]    --> src/main.rs:278:7
[INFO] [stderr]     |
[INFO] [stderr] 278 |         let deltaG = deltaH - self.temperature * deltaS;
[INFO] [stderr]     |             ^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: method `initiation_termination_deltaG` should have a snake case name such as `initiation_termination_delta_g`
[INFO] [stderr]    --> src/main.rs:282:1
[INFO] [stderr]     |
[INFO] [stderr] 282 | / fn initiation_termination_deltaG(&self, template_nucleotide: String, oligo_nucleotide: String) -> f64 {
[INFO] [stderr] 283 | |     if (template_nucleotide == "A" && oligo_nucleotide == "T") || (template_nucleotide == "T" && oligo_nucleotide == "A") {
[INFO] [stderr] 284 | |         let deltaH = 9.62;
[INFO] [stderr] 285 | |         let deltaS = 17.15/1000.0;
[INFO] [stderr] ...   |
[INFO] [stderr] 296 | |     }
[INFO] [stderr] 297 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `deltaH` should have a snake case name such as `delta_h`
[INFO] [stderr]    --> src/main.rs:284:7
[INFO] [stderr]     |
[INFO] [stderr] 284 |         let deltaH = 9.62;
[INFO] [stderr]     |             ^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `deltaS` should have a snake case name such as `delta_s`
[INFO] [stderr]    --> src/main.rs:285:7
[INFO] [stderr]     |
[INFO] [stderr] 285 |         let deltaS = 17.15/1000.0;
[INFO] [stderr]     |             ^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `deltaGinit` should have a snake case name such as `delta_ginit`
[INFO] [stderr]    --> src/main.rs:286:7
[INFO] [stderr]     |
[INFO] [stderr] 286 |         let deltaGinit = deltaH - (self.temperature*deltaS);
[INFO] [stderr]     |             ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `deltaH` should have a snake case name such as `delta_h`
[INFO] [stderr]    --> src/main.rs:289:7
[INFO] [stderr]     |
[INFO] [stderr] 289 |         let deltaH = 0.4184;
[INFO] [stderr]     |             ^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `deltaS` should have a snake case name such as `delta_s`
[INFO] [stderr]    --> src/main.rs:290:7
[INFO] [stderr]     |
[INFO] [stderr] 290 |         let deltaS = -11.72/1000.0;
[INFO] [stderr]     |             ^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `deltaGinit` should have a snake case name such as `delta_ginit`
[INFO] [stderr]    --> src/main.rs:291:7
[INFO] [stderr]     |
[INFO] [stderr] 291 |         let deltaGinit = deltaH - (self.temperature*deltaS);
[INFO] [stderr]     |             ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: method `calc_deltaG` should have a snake case name such as `calc_delta_g`
[INFO] [stderr]    --> src/main.rs:299:1
[INFO] [stderr]     |
[INFO] [stderr] 299 | / fn calc_deltaG(&self, template_piece: String) -> f64{
[INFO] [stderr] 300 | |     let mut deltaG = 0.0;
[INFO] [stderr] 301 | |     println!("template piece: {:?}", template_piece);
[INFO] [stderr] 302 | |     for i in 0..(self.oligo.len()-1) {
[INFO] [stderr] ...   |
[INFO] [stderr] 317 | |     deltaG
[INFO] [stderr] 318 | | }
[INFO] [stderr]     | |_^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `deltaG` should have a snake case name such as `delta_g`
[INFO] [stderr]    --> src/main.rs:300:6
[INFO] [stderr]     |
[INFO] [stderr] 300 |     let mut deltaG = 0.0;
[INFO] [stderr]     |         ^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `initiation_deltaG` should have a snake case name such as `initiation_delta_g`
[INFO] [stderr]    --> src/main.rs:303:7
[INFO] [stderr]     |
[INFO] [stderr] 303 |         let mut initiation_deltaG = 0.0;
[INFO] [stderr]     |             ^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `dinucleotide_deltaG` should have a snake case name such as `dinucleotide_delta_g`
[INFO] [stderr]    --> src/main.rs:306:7
[INFO] [stderr]     |
[INFO] [stderr] 306 |         let mut dinucleotide_deltaG = self.deltaG_dinucleotide(template_dinucleotide.clone(), oligo_dinucleotide.clone());
[INFO] [stderr]     |             ^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: method `lowest_deltaG` should have a snake case name such as `lowest_delta_g`
[INFO] [stderr]    --> src/main.rs:320:2
[INFO] [stderr]     |
[INFO] [stderr] 320 |       fn lowest_deltaG(&self) -> f64 {
[INFO] [stderr]     |  _____^
[INFO] [stderr] 321 | |         let mut lowestDeltaG = 0.0;
[INFO] [stderr] 322 | |         for i in 0..(self.template.len() - self.oligo.len()) {
[INFO] [stderr] 323 | |             let template_piece = self.template[i..(self.oligo.len()+i)].to_string();
[INFO] [stderr] ...   |
[INFO] [stderr] 329 | |         lowestDeltaG
[INFO] [stderr] 330 | |     }
[INFO] [stderr]     | |_____^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `lowestDeltaG` should have a snake case name such as `lowest_delta_g`
[INFO] [stderr]    --> src/main.rs:321:7
[INFO] [stderr]     |
[INFO] [stderr] 321 |         let mut lowestDeltaG = 0.0;
[INFO] [stderr]     |             ^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `currentDeltaG` should have a snake case name such as `current_delta_g`
[INFO] [stderr]    --> src/main.rs:324:8
[INFO] [stderr]     |
[INFO] [stderr] 324 |             let currentDeltaG = self.calc_deltaG(template_piece);
[INFO] [stderr]     |                 ^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `lowest_delta_G` should have a snake case name such as `lowest_delta_g`
[INFO] [stderr]    --> src/main.rs:339:6
[INFO] [stderr]     |
[INFO] [stderr] 339 |     let lowest_delta_G = simulation.lowest_deltaG();
[INFO] [stderr]     |         ^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable `lowest_delta_G` should have a snake case name such as `lowest_delta_g`
[INFO] [stderr]    --> src/main.rs:354:7
[INFO] [stderr]     |
[INFO] [stderr] 354 |         let lowest_delta_G = simulation.lowest_deltaG();
[INFO] [stderr]     |             ^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] error: aborting due to 2 previous errors
[INFO] [stderr] 
[INFO] [stderr] error: Could not compile `anneal_predictor`.
[INFO] [stderr] 
[INFO] [stderr] To learn more, run the command again with --verbose.
[INFO] running `"docker" "inspect" "c62a42546c4b3a0d9e6e857c10b3abfadc34927a014c793c386d52b59945d715"`
[INFO] running `"docker" "rm" "-f" "c62a42546c4b3a0d9e6e857c10b3abfadc34927a014c793c386d52b59945d715"`
[INFO] [stdout] c62a42546c4b3a0d9e6e857c10b3abfadc34927a014c793c386d52b59945d715