[INFO] cloning repository https://github.com/xhabararb/epidotplot [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/xhabararb/epidotplot" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fxhabararb%2Fepidotplot", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fxhabararb%2Fepidotplot'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 052bf98fceaddc2d66868b40ab0084ef02349e5d [INFO] linting xhabararb/epidotplot against nightly for clippy-nonminimal_bool-denied [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fxhabararb%2Fepidotplot" "/workspace/builds/worker-4-tc1/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc1/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/xhabararb/epidotplot [INFO] finished tweaking git repo https://github.com/xhabararb/epidotplot [INFO] tweaked toml for git repo https://github.com/xhabararb/epidotplot written to /workspace/builds/worker-4-tc1/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/xhabararb/epidotplot on toolchain nightly [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+nightly" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/xhabararb/epidotplot already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+nightly" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Updating crates.io index [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Downloading crates ... [INFO] [stderr] Downloaded unit-prefix v0.5.1 [INFO] [stderr] Downloaded ravif v0.11.20 [INFO] [stderr] Downloaded console v0.16.1 [INFO] [stderr] Downloaded openmp-sys v1.3.0 [INFO] [stderr] Downloaded equator-macro v0.4.2 [INFO] [stderr] Downloaded avif-serialize v0.8.6 [INFO] [stderr] Downloaded aligned-vec v0.6.4 [INFO] [stderr] Downloaded equator v0.4.2 [INFO] [stderr] Downloaded v_frame v0.3.9 [INFO] [stderr] Downloaded indicatif v0.18.3 [INFO] [stderr] Downloaded libsais v0.2.0 [INFO] [stderr] Downloaded zune-jpeg v0.4.20 [INFO] [stderr] Downloaded libsais-sys v0.2.0 [INFO] [stderr] Downloaded imageproc v0.25.0 [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+nightly" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] [stdout] 8e66c20c0687ea5d060afbbfe3a82612609be603124aa93e0adc9c2abb065f4e [INFO] running `Command { std: "docker" "start" "-a" "8e66c20c0687ea5d060afbbfe3a82612609be603124aa93e0adc9c2abb065f4e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "8e66c20c0687ea5d060afbbfe3a82612609be603124aa93e0adc9c2abb065f4e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "8e66c20c0687ea5d060afbbfe3a82612609be603124aa93e0adc9c2abb065f4e", kill_on_drop: false }` [INFO] [stdout] 8e66c20c0687ea5d060afbbfe3a82612609be603124aa93e0adc9c2abb065f4e [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=forbid" "-e" "RUSTDOCFLAGS=--cap-lints=forbid" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:d429b63d4308055ea97f60fb1d3dfca48854a00942f1bd2ad806beaf015945ec" "/opt/rustwide/cargo-home/bin/cargo" "+nightly" "clippy" "--frozen" "--all" "--all-targets" "--message-format=json", kill_on_drop: false }` [INFO] [stdout] 4436c2199b2b5ddbbe47aa884f6b29e6d8b11ab46b4ed7183d0de8234614efc2 [INFO] running `Command { std: "docker" "start" "-a" "4436c2199b2b5ddbbe47aa884f6b29e6d8b11ab46b4ed7183d0de8234614efc2", kill_on_drop: false }` [INFO] [stderr] Compiling syn v2.0.106 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Checking bytemuck v1.23.2 [INFO] [stderr] Compiling cc v1.2.34 [INFO] [stderr] Checking nom v7.1.3 [INFO] [stderr] Checking itertools v0.12.1 [INFO] [stderr] Compiling simd_helpers v0.1.0 [INFO] [stderr] Checking crc32fast v1.5.0 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Checking half v2.6.0 [INFO] [stderr] Checking avif-serialize v0.8.6 [INFO] [stderr] Checking maybe-rayon v0.1.1 [INFO] [stderr] Checking anstyle-query v1.1.4 [INFO] [stderr] Checking ttf-parser v0.25.1 [INFO] [stderr] Checking bit_field v0.10.3 [INFO] [stderr] Checking rgb v0.8.52 [INFO] [stderr] Checking jpeg-decoder v0.3.2 [INFO] [stderr] Compiling portable-atomic v1.11.1 [INFO] [stderr] Checking anstream v0.6.20 [INFO] [stderr] Checking gif v0.13.3 [INFO] [stderr] Checking flate2 v1.1.2 [INFO] [stderr] Checking zune-jpeg v0.4.20 [INFO] [stderr] Compiling virtue v0.0.18 [INFO] [stderr] Checking exr v1.73.0 [INFO] [stderr] Checking ab_glyph_rasterizer v0.1.10 [INFO] [stderr] Checking png v0.17.16 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Checking qoi v0.4.1 [INFO] [stderr] Checking clap_builder v4.5.46 [INFO] [stderr] Checking console v0.16.1 [INFO] [stderr] Checking wide v0.7.33 [INFO] [stderr] Checking unit-prefix v0.5.1 [INFO] [stderr] Checking unty v0.0.4 [INFO] [stderr] Checking serde_json v1.0.145 [INFO] [stderr] Checking num-format v0.4.4 [INFO] [stderr] Compiling bincode_derive v2.0.1 [INFO] [stderr] Checking tiff v0.9.1 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking indicatif v0.18.3 [INFO] [stderr] Checking num-bigint v0.4.6 [INFO] [stderr] Checking num-iter v0.1.45 [INFO] [stderr] Checking chrono v0.4.41 [INFO] [stderr] Compiling openmp-sys v1.3.0 [INFO] [stderr] Compiling libsais-sys v0.2.0 [INFO] [stderr] Checking bincode v2.0.1 [INFO] [stderr] Checking simba v0.8.1 [INFO] [stderr] Checking owned_ttf_parser v0.25.1 [INFO] [stderr] Checking ab_glyph v0.2.31 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking num v0.4.3 [INFO] [stderr] Compiling equator-macro v0.4.2 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling profiling-procmacros v1.0.17 [INFO] [stderr] Compiling arg_enum_proc_macro v0.3.4 [INFO] [stderr] Compiling num-derive v0.4.2 [INFO] [stderr] Compiling thiserror-impl v2.0.16 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling clap_derive v4.5.45 [INFO] [stderr] Checking profiling v1.0.17 [INFO] [stderr] Checking equator v0.4.2 [INFO] [stderr] Checking aligned-vec v0.6.4 [INFO] [stderr] Checking v_frame v0.3.9 [INFO] [stderr] Checking thiserror v2.0.16 [INFO] [stderr] Checking thiserror v1.0.69 [INFO] [stderr] Checking av1-grain v0.2.4 [INFO] [stderr] Checking clap v4.5.46 [INFO] [stderr] Checking rav1e v0.7.1 [INFO] [stderr] Checking nalgebra v0.32.6 [INFO] [stderr] Checking libsais v0.2.0 [INFO] [stderr] Checking serde v1.0.228 [INFO] [stderr] Checking ravif v0.11.20 [INFO] [stderr] Checking image v0.25.6 [INFO] [stderr] Checking imageproc v0.25.0 [INFO] [stderr] Checking epidotplot v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: this boolean expression can be simplified [INFO] [stdout] --> src/bio/methylation/bed.rs:214:8 [INFO] [stdout] | [INFO] [stdout] 214 | if !region_id.is_none_or(|id| id.as_str() == chrom.as_str()) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: try: `region_id.is_some_and(|id| id.as_str() != chrom.as_str())` [INFO] [stdout] | [INFO] [stdout] = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#nonminimal_bool [INFO] [stdout] = note: `#[warn(clippy::nonminimal_bool)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: this boolean expression can be simplified [INFO] [stdout] --> src/bio/methylation/bedgraph.rs:32:8 [INFO] [stdout] | [INFO] [stdout] 32 | if !region_id.is_none_or(|id| id.as_str() == chrom.as_str()) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: try: `region_id.is_some_and(|id| id.as_str() != chrom.as_str())` [INFO] [stdout] | [INFO] [stdout] = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#nonminimal_bool [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: this `impl` can be derived [INFO] [stdout] --> src/config/mod.rs:160:1 [INFO] [stdout] | [INFO] [stdout] 160 | / impl Default for SequenceMode { [INFO] [stdout] 161 | | fn default() -> Self { [INFO] [stdout] 162 | | Self::Original [INFO] [stdout] 163 | | } [INFO] [stdout] 164 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#derivable_impls [INFO] [stdout] = note: `#[warn(clippy::derivable_impls)]` on by default [INFO] [stdout] help: replace the manual implementation with a derive attribute and mark the default variant [INFO] [stdout] | [INFO] [stdout] 155 + #[derive(Default)] [INFO] [stdout] 156 | pub enum SequenceMode { [INFO] [stdout] 157 ~ #[default] [INFO] [stdout] 158 ~ Original, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: useless conversion to the same type: `&str` [INFO] [stdout] --> src/bio/dna/domain.rs:203:43 [INFO] [stdout] | [INFO] [stdout] 203 | assert_eq!(Rc::new("ab"), Rc::new("ab".into())); [INFO] [stdout] | ^^^^^^^^^^^ help: consider removing `.into()`: `"ab"` [INFO] [stdout] | [INFO] [stdout] = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#useless_conversion [INFO] [stdout] = note: `#[warn(clippy::useless_conversion)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: this boolean expression can be simplified [INFO] [stdout] --> src/bio/methylation/bed.rs:214:8 [INFO] [stdout] | [INFO] [stdout] 214 | if !region_id.is_none_or(|id| id.as_str() == chrom.as_str()) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: try: `region_id.is_some_and(|id| id.as_str() != chrom.as_str())` [INFO] [stdout] | [INFO] [stdout] = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#nonminimal_bool [INFO] [stdout] = note: `#[warn(clippy::nonminimal_bool)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: this boolean expression can be simplified [INFO] [stdout] --> src/bio/methylation/bedgraph.rs:32:8 [INFO] [stdout] | [INFO] [stdout] 32 | if !region_id.is_none_or(|id| id.as_str() == chrom.as_str()) { [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ help: try: `region_id.is_some_and(|id| id.as_str() != chrom.as_str())` [INFO] [stdout] | [INFO] [stdout] = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#nonminimal_bool [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: module has the same name as its containing module [INFO] [stdout] --> src/bio/tests.rs:31:1 [INFO] [stdout] | [INFO] [stdout] 31 | / mod tests { [INFO] [stdout] 32 | | use super::{bed_line, mv, write_tmp}; [INFO] [stdout] 33 | | use crate::bio::dna::domain::SequenceRegion; [INFO] [stdout] 34 | | use crate::bio::dna::parse::{NativeSequenceParser, SequenceParser}; [INFO] [stdout] ... | [INFO] [stdout] 436 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#module_inception [INFO] [stdout] = note: `#[warn(clippy::module_inception)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: this operation has no effect [INFO] [stdout] --> src/bio/tests.rs:106:22 [INFO] [stdout] | [INFO] [stdout] 106 | let offs_c = offs_b + 0; [INFO] [stdout] | ^^^^^^^^^^ help: consider reducing it to: `offs_b` [INFO] [stdout] | [INFO] [stdout] = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#identity_op [INFO] [stdout] = note: `#[warn(clippy::identity_op)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: this operation has no effect [INFO] [stdout] --> src/bio/tests.rs:115:23 [INFO] [stdout] | [INFO] [stdout] 115 | assert_eq!(s[&(offs_d + 0)], mv(30.0)); [INFO] [stdout] | ^^^^^^^^^^^^ help: consider reducing it to: `offs_d` [INFO] [stdout] | [INFO] [stdout] = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#identity_op [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: this `impl` can be derived [INFO] [stdout] --> src/config/mod.rs:160:1 [INFO] [stdout] | [INFO] [stdout] 160 | / impl Default for SequenceMode { [INFO] [stdout] 161 | | fn default() -> Self { [INFO] [stdout] 162 | | Self::Original [INFO] [stdout] 163 | | } [INFO] [stdout] 164 | | } [INFO] [stdout] | |_^ [INFO] [stdout] | [INFO] [stdout] = help: for further information visit https://rust-lang.github.io/rust-clippy/master/index.html#derivable_impls [INFO] [stdout] = note: `#[warn(clippy::derivable_impls)]` on by default [INFO] [stdout] help: replace the manual implementation with a derive attribute and mark the default variant [INFO] [stdout] | [INFO] [stdout] 155 + #[derive(Default)] [INFO] [stdout] 156 | pub enum SequenceMode { [INFO] [stdout] 157 ~ #[default] [INFO] [stdout] 158 ~ Original, [INFO] [stdout] | [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 41.08s [INFO] running `Command { std: "docker" "inspect" "4436c2199b2b5ddbbe47aa884f6b29e6d8b11ab46b4ed7183d0de8234614efc2", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "4436c2199b2b5ddbbe47aa884f6b29e6d8b11ab46b4ed7183d0de8234614efc2", kill_on_drop: false }` [INFO] [stdout] 4436c2199b2b5ddbbe47aa884f6b29e6d8b11ab46b4ed7183d0de8234614efc2