[INFO] fetching crate molar_python 2.1.0...
[INFO] documenting molar_python-2.1.0 against 1.99.0-beta.1 for beta-rustdoc-1.99-1
[INFO] extracting crate molar_python 2.1.0 into /workspace/builds/worker-3-tc2/source
[INFO] started tweaking crates.io crate molar_python 2.1.0
[INFO] finished tweaking crates.io crate molar_python 2.1.0
[INFO] tweaked toml for crates.io crate molar_python 2.1.0 written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate molar_python 2.1.0 on toolchain 1.99.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate molar_python 2.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:00c5645b54fe3ce5dae1417175e3c7fb6a6646c021d554ecd63a097b8b9f3602" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] f3da8c814c39c01afac6b3e1fee2c507ca0dc74ff9d2f366491aba3c5a1b7764
[INFO] running `Command { std: "docker" "start" "f3da8c814c39c01afac6b3e1fee2c507ca0dc74ff9d2f366491aba3c5a1b7764", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "f3da8c814c39c01afac6b3e1fee2c507ca0dc74ff9d2f366491aba3c5a1b7764" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f3da8c814c39c01afac6b3e1fee2c507ca0dc74ff9d2f366491aba3c5a1b7764", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "f3da8c814c39c01afac6b3e1fee2c507ca0dc74ff9d2f366491aba3c5a1b7764" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.1" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
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[INFO] [stderr]    Compiling liquid-lib v0.26.8
[INFO] [stderr]     Checking ahash v0.8.12
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[INFO] [stderr]     Checking rand_chacha v0.3.1
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[INFO] [stderr]     Checking tract-data v0.21.10
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[INFO] [stderr]     Checking pyo3-log v0.13.4
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[INFO] [stderr]    Compiling tract-linalg v0.21.10
[INFO] [stderr]     Checking powersasa v0.3.1
[INFO] [stderr]     Checking tract-core v0.21.10
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[INFO] [stderr]  Documenting molar_python v2.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unresolved link to `to_pyarray`
[INFO] [stdout]    --> src/utils.rs:118:21
[INFO] [stdout]     |
[INFO] [stdout] 118 | /// numpy built-in [to_pyarray] method always produces 2D arrays,while we need 1D
[INFO] [stdout]     |                     ^^^^^^^^^^ no item named `to_pyarray` in scope
[INFO] [stdout]     |
[INFO] [stdout]     = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout]     = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `0`
[INFO] [stdout]   --> src/particle.rs:10:1
[INFO] [stdout]    |
[INFO] [stdout] 10 | / /// View over one atom and its coordinates inside a system/selection.
[INFO] [stdout] 11 | | ///
[INFO] [stdout] 12 | | /// Exposes both coordinate fields and atom descriptors as mutable properties.
[INFO] [stdout] 13 | | ///
[INFO] [stdout] ...  |
[INFO] [stdout] 20 | | ///    p.x = 1.5    # move to 1.5 nm on x axis
[INFO] [stdout] 21 | | ///    p.mass = 12.0
[INFO] [stdout]    | |____________________^
[INFO] [stdout]    |
[INFO] [stdout]    = note: the link appears in this line:
[INFO] [stdout]            
[INFO] [stdout]               p = sys[0]
[INFO] [stdout]                       ^
[INFO] [stdout]    = note: no item named `0` in scope
[INFO] [stdout]    = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `0`
[INFO] [stdout]    --> src/system.rs:582:20
[INFO] [stdout]     |
[INFO] [stdout] 582 |     ///    p = sys[0]    # first atom
[INFO] [stdout]     |                    ^ no item named `0` in scope
[INFO] [stdout]     |
[INFO] [stdout]     = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `:5`
[INFO] [stdout]   --> src/lib.rs:63:25
[INFO] [stdout]    |
[INFO] [stdout] 63 | ///    print(sasa.areas[:5])     # per-atom areas
[INFO] [stdout]    |                         ^^ invalid path separator
[INFO] [stdout]    |
[INFO] [stdout]    = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: could not parse code block as Rust code
[INFO] [stdout]   --> src/periodic_box.rs:45:5
[INFO] [stdout]    |
[INFO] [stdout] 45 | /     /// Create a periodic box.
[INFO] [stdout] 46 | |     ///
[INFO] [stdout] 47 | |     /// :param py_args:
[INFO] [stdout] 48 | |     ///     Positional arguments:
[INFO] [stdout] ...  |
[INFO] [stdout] 56 | |     /// :raises TypeError: If argument count is not 1 or 2.
[INFO] [stdout] 57 | |     /// :raises ValueError: If input shapes are incompatible.
[INFO] [stdout]    | |_____________________________________________________________^
[INFO] [stdout]    |
[INFO] [stdout]    = note: error from rustc: unknown start of token: `
[INFO] [stdout]    = note: error from rustc: unknown start of token: `
[INFO] [stdout]    = note: error from rustc: unknown start of token: `
[INFO] [stdout]    = note: error from rustc: unknown start of token: `
[INFO] [stdout]    = note: error from rustc: unknown start of token: `
[INFO] [stdout]    = note: error from rustc: unknown start of token: `
[INFO] [stdout]    = note: error from rustc: unknown start of token: `
[INFO] [stdout]    = note: error from rustc: unknown start of token: `
[INFO] [stdout]    = note: error from rustc: unknown start of token: `
[INFO] [stdout]    = note: error from rustc: unknown start of token: `
[INFO] [stdout]    = note: error from rustc: unknown start of token: `
[INFO] [stdout]    = note: error from rustc: unknown start of token: `
[INFO] [stdout]    = note: error from rustc: unknown start of token: \u{2014}
[INFO] [stdout]    = note: error from rustc: unknown start of token: `
[INFO] [stdout]    = note: error from rustc: unknown start of token: `
[INFO] [stdout]    = note: `#[warn(rustdoc::invalid_rust_codeblocks)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: could not parse code block as Rust code
[INFO] [stdout]    --> src/selection.rs:943:5
[INFO] [stdout]     |
[INFO] [stdout] 943 | /     /// Compute DSSP secondary structure assignment for each residue.
[INFO] [stdout] 944 | |     ///
[INFO] [stdout] 945 | |     /// Implements the Kabsch & Sander (1983) algorithm.  Pass a **protein-only**
[INFO] [stdout] 946 | |     /// selection; non-protein residues lack backbone atoms and will appear as
[INFO] [stdout] ...   |
[INFO] [stdout] 973 | |     ///    codes = prot.dssp()            # ['H', 'H', 'T', 'E', '~', ...]
[INFO] [stdout] 974 | |     ///    helix_count = codes.count('H')
[INFO] [stdout]     | |_________________________________________^
[INFO] [stdout]     |
[INFO] [stdout]     = note: error from rustc: unknown start of token: `
[INFO] [stdout]     = note: error from rustc: unknown start of token: `
[INFO] [stdout]     = note: error from rustc: unknown start of token: `
[INFO] [stdout]     = note: error from rustc: unknown start of token: `
[INFO] [stdout]     = note: error from rustc: unknown start of token: \
[INFO] [stdout]     = note: error from rustc: unknown start of token: `
[INFO] [stdout]     = note: error from rustc: unknown start of token: `
[INFO] [stdout]     = note: error from rustc: unknown start of token: `
[INFO] [stdout]     = note: error from rustc: unknown start of token: `
[INFO] [stdout]     = note: error from rustc: unknown start of token: `
[INFO] [stdout]     = note: error from rustc: unknown start of token: `
[INFO] [stdout]     = note: error from rustc: unknown start of token: `
[INFO] [stdout]     = note: error from rustc: unknown start of token: `
[INFO] [stdout]     = note: error from rustc: unknown start of token: `
[INFO] [stdout]     = note: error from rustc: unknown start of token: `
[INFO] [stdout]     = note: error from rustc: unknown start of token: `
[INFO] [stdout]     = note: error from rustc: unknown start of token: `
[INFO] [stdout]     = note: error from rustc: unknown start of token: `
[INFO] [stdout]     = note: error from rustc: unknown start of token: `
[INFO] [stdout]     = note: error from rustc: unknown start of token: \u{2265}
[INFO] [stdout]     = note: error from rustc: unknown start of token: \u{b0}
[INFO] [stdout]     = note: error from rustc: unknown start of token: `
[INFO] [stdout]     = note: error from rustc: unknown start of token: `
[INFO] [stdout]     = note: error from rustc: unknown start of token: `
[INFO] [stdout]     = note: error from rustc: unknown start of token: `
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 07s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/molar_python/index.html
[INFO] running `Command { std: "docker" "inspect" "f3da8c814c39c01afac6b3e1fee2c507ca0dc74ff9d2f366491aba3c5a1b7764", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "RUSTC_BOOTSTRAP=1" "-e" "DOCS_RS=1" "-w" "/opt/rustwide/workdir" "--user" "0:0" "f3da8c814c39c01afac6b3e1fee2c507ca0dc74ff9d2f366491aba3c5a1b7764" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.1" "rustdoc" "--lib" "-Zrustdoc-map" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }`
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[INFO] [stderr]     Checking molar_ff v2.1.0
[INFO] [stderr]  Documenting molar_python v2.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 48.51s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/molar_python/index.html
[INFO] running `Command { std: "docker" "inspect" "f3da8c814c39c01afac6b3e1fee2c507ca0dc74ff9d2f366491aba3c5a1b7764", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f3da8c814c39c01afac6b3e1fee2c507ca0dc74ff9d2f366491aba3c5a1b7764", kill_on_drop: false }`
[INFO] [stdout] f3da8c814c39c01afac6b3e1fee2c507ca0dc74ff9d2f366491aba3c5a1b7764
