[INFO] cloning repository https://github.com/lorewar2/bio_exp
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/lorewar2/bio_exp" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Florewar2%2Fbio_exp", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Florewar2%2Fbio_exp'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 48bbb4f81b7c08244bcde288ad821f45a4cd1287
[INFO] documenting lorewar2/bio_exp against 1.98.0-beta.8 for beta-rustdoc-1.99-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Florewar2%2Fbio_exp" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/lorewar2/bio_exp
[INFO] finished tweaking git repo https://github.com/lorewar2/bio_exp
[INFO] tweaked toml for git repo https://github.com/lorewar2/bio_exp written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/lorewar2/bio_exp on toolchain 1.98.0-beta.8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.98.0-beta.8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/lorewar2/bio_exp already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.98.0-beta.8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 168 packages to latest compatible versions
[INFO] [stderr]       Adding aho-corasick v1.1.5
[INFO] [stderr]       Adding approx v0.5.1
[INFO] [stderr]       Adding autocfg v1.5.1
[INFO] [stderr]       Adding bindgen v0.72.1
[INFO] [stderr]       Adding bio v4.0.1
[INFO] [stderr]       Adding bio-types v1.0.4
[INFO] [stderr]       Adding bit-set v0.10.0
[INFO] [stderr]       Adding bit-vec v0.9.1
[INFO] [stderr]       Adding bitflags v2.13.1
[INFO] [stderr]       Adding bv v0.11.1
[INFO] [stderr]       Adding bytecount v0.6.9
[INFO] [stderr]       Adding bytemuck v1.25.2
[INFO] [stderr]       Adding byteorder v1.5.0
[INFO] [stderr]       Adding bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]       Adding cc v1.4.4
[INFO] [stderr]       Adding cexpr v0.6.0
[INFO] [stderr]       Adding cfg-if v1.0.4
[INFO] [stderr]       Adding clang-sys v1.9.1
[INFO] [stderr]       Adding cmake v0.1.58
[INFO] [stderr]       Adding csv v1.4.0
[INFO] [stderr]       Adding csv-core v0.1.13
[INFO] [stderr]       Adding curl-sys v0.4.90+curl-8.21.0
[INFO] [stderr]       Adding custom_derive v0.1.7
[INFO] [stderr]       Adding derefable v0.1.0
[INFO] [stderr]       Adding derive-new v0.6.0
[INFO] [stderr]       Adding derive-new v0.7.0
[INFO] [stderr]       Adding displaydoc v0.2.7
[INFO] [stderr]       Adding editdistancek v1.0.2
[INFO] [stderr]       Adding either v1.18.0
[INFO] [stderr]       Adding enum-map v2.7.3
[INFO] [stderr]       Adding enum-map-derive v0.17.0
[INFO] [stderr]       Adding equivalent v1.0.2
[INFO] [stderr]       Adding feature-probe v0.1.1
[INFO] [stderr]       Adding find-msvc-tools v0.1.11
[INFO] [stderr]       Adding fixedbitset v0.4.2
[INFO] [stderr]       Adding fixedbitset v0.5.7
[INFO] [stderr]       Adding foldhash v0.1.5
[INFO] [stderr]       Adding form_urlencoded v1.2.2
[INFO] [stderr]       Adding fs-utils v1.1.4
[INFO] [stderr]       Adding fxhash v0.2.1
[INFO] [stderr]       Adding getrandom v0.2.17
[INFO] [stderr]       Adding getrandom v0.4.3
[INFO] [stderr]       Adding getset v0.1.7
[INFO] [stderr]       Adding glob v0.3.4
[INFO] [stderr]       Adding hashbrown v0.15.5
[INFO] [stderr]       Adding hashbrown v0.17.1
[INFO] [stderr]       Adding heck v0.5.0
[INFO] [stderr]       Adding hts-sys v2.2.1
[INFO] [stderr]       Adding icu_collections v2.3.0
[INFO] [stderr]       Adding icu_locale_core v2.3.0
[INFO] [stderr]       Adding icu_normalizer v2.3.0
[INFO] [stderr]       Adding icu_normalizer_data v2.3.0
[INFO] [stderr]       Adding icu_properties v2.3.0
[INFO] [stderr]       Adding icu_properties_data v2.3.0
[INFO] [stderr]       Adding icu_provider v2.3.1
[INFO] [stderr]       Adding idna v1.1.0
[INFO] [stderr]       Adding idna_adapter v1.2.2
[INFO] [stderr]       Adding ieee754 v0.2.6
[INFO] [stderr]       Adding indexmap v2.14.0
[INFO] [stderr]       Adding itertools v0.13.0
[INFO] [stderr]       Adding itertools v0.15.0
[INFO] [stderr]       Adding itertools-num v0.1.3
[INFO] [stderr]       Adding itoa v1.0.18
[INFO] [stderr]       Adding jobserver v0.1.35
[INFO] [stderr]       Adding lazy_static v1.5.0
[INFO] [stderr]       Adding libc v0.2.189
[INFO] [stderr]       Adding libloading v0.8.9
[INFO] [stderr]       Adding libm v0.1.4 (available: v0.2.16)
[INFO] [stderr]       Adding libm v0.2.16
[INFO] [stderr]       Adding libz-sys v1.1.29
[INFO] [stderr]       Adding linear-map v1.2.0
[INFO] [stderr]       Adding litemap v0.8.3
[INFO] [stderr]       Adding logaddexp v0.1.4
[INFO] [stderr]       Adding lzma-sys v0.1.20
[INFO] [stderr]       Adding matrixmultiply v0.3.11
[INFO] [stderr]       Adding memchr v2.8.3
[INFO] [stderr]       Adding minimal-lexical v0.2.1
[INFO] [stderr]       Adding multimap v0.10.1
[INFO] [stderr]       Adding nalgebra v0.29.0
[INFO] [stderr]       Adding nalgebra v0.33.3
[INFO] [stderr]       Adding nalgebra-macros v0.1.0
[INFO] [stderr]       Adding ndarray v0.17.2
[INFO] [stderr]       Adding newtype_derive v0.1.6
[INFO] [stderr]       Adding nom v7.1.3
[INFO] [stderr]       Adding num-bigint v0.4.8
[INFO] [stderr]       Adding num-complex v0.4.6
[INFO] [stderr]       Adding num-integer v0.1.47
[INFO] [stderr]       Adding num-rational v0.4.2
[INFO] [stderr]       Adding num-traits v0.2.19
[INFO] [stderr]       Adding openssl-src v300.6.1+3.6.3
[INFO] [stderr]       Adding openssl-sys v0.9.117
[INFO] [stderr]       Adding ordered-float v5.5.0
[INFO] [stderr]       Adding paste v1.0.15
[INFO] [stderr]       Adding percent-encoding v2.3.2
[INFO] [stderr]       Adding petgraph v0.6.5 (available: v0.8.3)
[INFO] [stderr]       Adding petgraph v0.8.3
[INFO] [stderr]       Adding pkg-config v0.3.34
[INFO] [stderr]       Adding portable-atomic v1.15.0
[INFO] [stderr]       Adding portable-atomic-util v0.2.7
[INFO] [stderr]       Adding potential_utf v0.1.6
[INFO] [stderr]       Adding ppv-lite86 v0.2.21
[INFO] [stderr]       Adding proc-macro2 v0.4.30
[INFO] [stderr]       Adding proc-macro2 v1.0.107
[INFO] [stderr]       Adding quick-error v1.2.3
[INFO] [stderr]       Adding quote v0.6.13
[INFO] [stderr]       Adding quote v1.0.47
[INFO] [stderr]       Adding r-efi v6.0.0
[INFO] [stderr]       Adding rand v0.8.7 (available: v0.10.2)
[INFO] [stderr]       Adding rand_chacha v0.3.1
[INFO] [stderr]       Adding rand_core v0.6.4
[INFO] [stderr]       Adding rand_distr v0.4.3
[INFO] [stderr]       Adding rawpointer v0.2.1
[INFO] [stderr]       Adding regex v1.13.1
[INFO] [stderr]       Adding regex-automata v0.4.18
[INFO] [stderr]       Adding regex-syntax v0.8.11
[INFO] [stderr]       Adding rust-htslib v1.0.1
[INFO] [stderr]       Adding rustc-hash v2.1.3
[INFO] [stderr]       Adding rustc_version v0.1.7
[INFO] [stderr]       Adding rustversion v1.0.23
[INFO] [stderr]       Adding ryu v1.0.23
[INFO] [stderr]       Adding safe_arch v0.7.4
[INFO] [stderr]       Adding semver v0.1.20
[INFO] [stderr]       Adding serde v1.0.229
[INFO] [stderr]       Adding serde_core v1.0.229
[INFO] [stderr]       Adding serde_derive v1.0.229
[INFO] [stderr]       Adding shlex v1.3.0
[INFO] [stderr]       Adding shlex v2.0.1
[INFO] [stderr]       Adding simba v0.6.0
[INFO] [stderr]       Adding simba v0.9.1
[INFO] [stderr]       Adding smallvec v1.15.2
[INFO] [stderr]       Adding stable_deref_trait v1.2.1
[INFO] [stderr]       Adding statrs v0.16.1 (available: v0.19.1)
[INFO] [stderr]       Adding statrs v0.18.0
[INFO] [stderr]       Adding strum v0.28.0
[INFO] [stderr]       Adding strum_macros v0.26.4
[INFO] [stderr]       Adding strum_macros v0.28.0
[INFO] [stderr]       Adding syn v0.15.44
[INFO] [stderr]       Adding syn v1.0.109
[INFO] [stderr]       Adding syn v2.0.119
[INFO] [stderr]       Adding syn v3.0.3
[INFO] [stderr]       Adding synstructure v0.13.2
[INFO] [stderr]       Adding thiserror v1.0.69
[INFO] [stderr]       Adding thiserror v2.0.20
[INFO] [stderr]       Adding thiserror-impl v1.0.69
[INFO] [stderr]       Adding thiserror-impl v2.0.20
[INFO] [stderr]       Adding tinystr v0.8.4
[INFO] [stderr]       Adding triple_accel v0.4.0
[INFO] [stderr]       Adding typenum v1.20.1
[INFO] [stderr]       Adding unicode-ident v1.0.24
[INFO] [stderr]       Adding unicode-xid v0.1.0
[INFO] [stderr]       Adding url v2.5.8
[INFO] [stderr]       Adding utf8_iter v1.0.4
[INFO] [stderr]       Adding vcpkg v0.2.15
[INFO] [stderr]       Adding vec_map v0.8.2
[INFO] [stderr]       Adding wasi v0.11.1+wasi-snapshot-preview1
[INFO] [stderr]       Adding wide v0.7.33
[INFO] [stderr]       Adding windows-link v0.2.1
[INFO] [stderr]       Adding windows-sys v0.61.2
[INFO] [stderr]       Adding writeable v0.6.4
[INFO] [stderr]       Adding yoke v0.8.3
[INFO] [stderr]       Adding yoke-derive v0.8.2
[INFO] [stderr]       Adding zerocopy v0.8.56
[INFO] [stderr]       Adding zerocopy-derive v0.8.56
[INFO] [stderr]       Adding zerofrom v0.1.8
[INFO] [stderr]       Adding zerofrom-derive v0.1.7
[INFO] [stderr]       Adding zerotrie v0.2.5
[INFO] [stderr]       Adding zerovec v0.11.8
[INFO] [stderr]       Adding zerovec-derive v0.11.6
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded logaddexp v0.1.4
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded getset v0.1.7
[INFO] [stderr]   Downloaded itertools-num v0.1.3
[INFO] [stderr]   Downloaded editdistancek v1.0.2
[INFO] [stderr]   Downloaded derefable v0.1.0
[INFO] [stderr]   Downloaded rust-htslib v1.0.1
[INFO] [stderr]   Downloaded ordered-float v5.5.0
[INFO] [stderr]   Downloaded itertools v0.15.0
[INFO] [stderr]   Downloaded bio v4.0.1
[INFO] [stderr]   Downloaded nalgebra v0.33.3
[INFO] [stderr]   Downloaded libz-sys v1.1.29
[INFO] [stderr]   Downloaded curl-sys v0.4.90+curl-8.21.0
[INFO] [stderr]   Downloaded hts-sys v2.2.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:00c5645b54fe3ce5dae1417175e3c7fb6a6646c021d554ecd63a097b8b9f3602" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 5d23904bfbf3448d87d211c889eac8bd1f44aedc32ab9e0c8711ad0a3447ba83
[INFO] running `Command { std: "docker" "start" "5d23904bfbf3448d87d211c889eac8bd1f44aedc32ab9e0c8711ad0a3447ba83", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5d23904bfbf3448d87d211c889eac8bd1f44aedc32ab9e0c8711ad0a3447ba83", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "5d23904bfbf3448d87d211c889eac8bd1f44aedc32ab9e0c8711ad0a3447ba83" "/opt/rustwide/cargo-home/bin/cargo" "+1.98.0-beta.8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5d23904bfbf3448d87d211c889eac8bd1f44aedc32ab9e0c8711ad0a3447ba83", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "5d23904bfbf3448d87d211c889eac8bd1f44aedc32ab9e0c8711ad0a3447ba83" "/opt/rustwide/cargo-home/bin/cargo" "+1.98.0-beta.8" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling pkg-config v0.3.34
[INFO] [stderr]     Checking bytemuck v1.25.2
[INFO] [stderr]    Compiling glob v0.3.4
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling matrixmultiply v0.3.11
[INFO] [stderr]     Checking litemap v0.8.3
[INFO] [stderr]    Compiling serde_core v1.0.229
[INFO] [stderr]     Checking writeable v0.6.4
[INFO] [stderr]    Compiling icu_properties_data v2.3.0
[INFO] [stderr]     Checking rawpointer v0.2.1
[INFO] [stderr]    Compiling syn v2.0.119
[INFO] [stderr]    Compiling syn v3.0.3
[INFO] [stderr]    Compiling regex-syntax v0.8.11
[INFO] [stderr]    Compiling icu_normalizer_data v2.3.0
[INFO] [stderr]    Compiling openssl-src v300.6.1+3.6.3
[INFO] [stderr]    Compiling cmake v0.1.58
[INFO] [stderr]    Compiling libloading v0.8.9
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling bindgen v0.72.1
[INFO] [stderr]     Checking safe_arch v0.7.4
[INFO] [stderr]    Compiling either v1.18.0
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling itertools v0.13.0
[INFO] [stderr]     Checking aho-corasick v1.1.5
[INFO] [stderr]    Compiling rustc-hash v2.1.3
[INFO] [stderr]    Compiling clang-sys v1.9.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]     Checking smallvec v1.15.2
[INFO] [stderr]    Compiling bitflags v2.13.1
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling openssl-sys v0.9.117
[INFO] [stderr]    Compiling libz-sys v1.1.29
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking num-integer v0.1.47
[INFO] [stderr]     Checking approx v0.5.1
[INFO] [stderr]     Checking wide v0.7.33
[INFO] [stderr]     Checking num-rational v0.4.2
[INFO] [stderr]     Checking rand_distr v0.4.3
[INFO] [stderr]    Compiling curl-sys v0.4.90+curl-8.21.0
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]     Checking percent-encoding v2.3.2
[INFO] [stderr]     Checking csv-core v0.1.13
[INFO] [stderr]     Checking form_urlencoded v1.2.2
[INFO] [stderr]     Checking fixedbitset v0.5.7
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]     Checking regex-automata v0.4.18
[INFO] [stderr]     Checking bit-vec v0.9.1
[INFO] [stderr]    Compiling libm v0.1.4
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]     Checking bit-set v0.10.0
[INFO] [stderr]     Checking petgraph v0.8.3
[INFO] [stderr]     Checking itertools v0.15.0
[INFO] [stderr]     Checking simba v0.9.1
[INFO] [stderr]     Checking simba v0.6.0
[INFO] [stderr]     Checking fxhash v0.2.1
[INFO] [stderr]     Checking ndarray v0.17.2
[INFO] [stderr]     Checking itertools-num v0.1.3
[INFO] [stderr]     Checking csv v1.4.0
[INFO] [stderr]     Checking ordered-float v5.5.0
[INFO] [stderr]     Checking regex v1.13.1
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking strum v0.28.0
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]    Compiling zerovec-derive v0.11.6
[INFO] [stderr]    Compiling displaydoc v0.2.7
[INFO] [stderr]    Compiling serde_derive v1.0.229
[INFO] [stderr]    Compiling thiserror-impl v2.0.20
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr] error: could not compile `syn` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/1.98.0-beta.8-x86_64-unknown-linux-gnu/bin/rustc --crate-name syn --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/syn-2.0.119/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --cfg 'feature="clone-impls"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="extra-traits"' --cfg 'feature="fold"' --cfg 'feature="full"' --cfg 'feature="parsing"' --cfg 'feature="printing"' --cfg 'feature="proc-macro"' --cfg 'feature="visit"' --cfg 'feature="visit-mut"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clone-impls", "default", "derive", "extra-traits", "fold", "full", "parsing", "printing", "proc-macro", "test", "visit", "visit-mut"))' -C metadata=2d6d2dc384b5aaeb -C extra-filename=-f82260a0100b5320 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern proc_macro2=/opt/rustwide/target/debug/deps/libproc_macro2-07b820aa231198b5.rmeta --extern quote=/opt/rustwide/target/debug/deps/libquote-bf53898b3f04765a.rmeta --extern unicode_ident=/opt/rustwide/target/debug/deps/libunicode_ident-86faa6b6bcc5b157.rmeta --cap-lints allow --cap-lints=warn` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] running `Command { std: "docker" "inspect" "5d23904bfbf3448d87d211c889eac8bd1f44aedc32ab9e0c8711ad0a3447ba83", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5d23904bfbf3448d87d211c889eac8bd1f44aedc32ab9e0c8711ad0a3447ba83", kill_on_drop: false }`
[INFO] [stdout] 5d23904bfbf3448d87d211c889eac8bd1f44aedc32ab9e0c8711ad0a3447ba83
