[INFO] cloning repository https://github.com/MoinSebi/pan-sv
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/MoinSebi/pan-sv" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMoinSebi%2Fpan-sv", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMoinSebi%2Fpan-sv'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] f4de9b6aa71bdd054a201f175831e6569a2c7bc1
[INFO] documenting MoinSebi/pan-sv/f4de9b6aa71bdd054a201f175831e6569a2c7bc1 against 1.99.0-beta.1 for beta-rustdoc-1.99-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMoinSebi%2Fpan-sv" "/workspace/builds/worker-1-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/MoinSebi/pan-sv
[INFO] finished tweaking git repo https://github.com/MoinSebi/pan-sv
[INFO] tweaked toml for git repo https://github.com/MoinSebi/pan-sv written to /workspace/builds/worker-1-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/MoinSebi/pan-sv on toolchain 1.99.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/MoinSebi/pan-sv already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded either v1.7.0
[INFO] [stderr]   Downloaded gfaR v0.1.3
[INFO] [stderr]   Downloaded iana-time-zone v0.1.44
[INFO] [stderr]   Downloaded os_str_bytes v3.1.0
[INFO] [stderr]   Downloaded clap v3.0.0-beta.4
[INFO] [stderr]   Downloaded libc v0.2.131
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:00c5645b54fe3ce5dae1417175e3c7fb6a6646c021d554ecd63a097b8b9f3602" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] e8707fe546b369f0c4b0e694519e772f10db0f1dde8c1e1084707953b499a3eb
[INFO] running `Command { std: "docker" "start" "e8707fe546b369f0c4b0e694519e772f10db0f1dde8c1e1084707953b499a3eb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e8707fe546b369f0c4b0e694519e772f10db0f1dde8c1e1084707953b499a3eb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "e8707fe546b369f0c4b0e694519e772f10db0f1dde8c1e1084707953b499a3eb" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e8707fe546b369f0c4b0e694519e772f10db0f1dde8c1e1084707953b499a3eb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "e8707fe546b369f0c4b0e694519e772f10db0f1dde8c1e1084707953b499a3eb" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.1" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.131
[INFO] [stderr]     Checking once_cell v1.13.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.43
[INFO] [stderr]    Compiling quote v1.0.21
[INFO] [stderr]    Compiling unicode-ident v1.0.3
[INFO] [stderr]    Compiling syn v1.0.99
[INFO] [stderr]     Checking regex-syntax v0.6.27
[INFO] [stderr]     Checking termcolor v1.1.3
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling indexmap v1.9.1
[INFO] [stderr]    Compiling crossbeam-utils v0.8.11
[INFO] [stderr]     Checking gfaR v0.1.3
[INFO] [stderr]     Checking aho-corasick v0.7.18
[INFO] [stderr]    Compiling heck v0.4.0
[INFO] [stderr]     Checking iana-time-zone v0.1.44
[INFO] [stderr]     Checking textwrap v0.14.2
[INFO] [stderr]     Checking os_str_bytes v3.1.0
[INFO] [stderr]     Checking crossbeam-channel v0.5.6
[INFO] [stderr]     Checking getrandom v0.2.7
[INFO] [stderr]     Checking atty v0.2.14
[INFO] [stderr]     Checking time v0.1.44
[INFO] [stderr]     Checking ahash v0.7.6
[INFO] [stderr]     Checking hashbrown v0.12.3
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]     Checking chrono v0.4.22
[INFO] [stderr]     Checking gfaR_wrapper v0.1.0 (https://github.com/MoinSebi/gfaR_wrapper#b1c51acd)
[INFO] [stderr]     Checking regex v1.6.0
[INFO] [stderr]     Checking env_logger v0.8.4
[INFO] [stderr]     Checking related_intervals v0.1.0 (https://github.com/MoinSebi/nested_intervals#e7911a99)
[INFO] [stderr]     Checking bifurcation v0.1.0 (https://github.com/MoinSebi/bifurcation#d4713805)
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling clap_derive v3.2.17
[INFO] [stderr]     Checking clap v3.0.0-beta.4
[INFO] [stderr]  Documenting pan-sv v0.1.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unnecessary parentheses around closure body
[INFO] [stdout]    --> src/panSV/algo.rs:158:42
[INFO] [stdout]     |
[INFO] [stdout] 158 |                 panSV_new.sort_by(|a, b| (a.start.cmp(&b.start).then(b.end.cmp(&a.end))));
[INFO] [stdout]     |                                          ^                                             ^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_parens)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] help: remove these parentheses
[INFO] [stdout]     |
[INFO] [stdout] 158 -                 panSV_new.sort_by(|a, b| (a.start.cmp(&b.start).then(b.end.cmp(&a.end))));
[INFO] [stdout] 158 +                 panSV_new.sort_by(|a, b| a.start.cmp(&b.start).then(b.end.cmp(&a.end)));
[INFO] [stdout]     |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `10,30,31,32,45`
[INFO] [stdout]  --> src/core/graph_helper.rs:7:6
[INFO] [stdout]   |
[INFO] [stdout] 7 | /// [10,30,31,32,45]
[INFO] [stdout]   |      ^^^^^^^^^^^^^^ no item named `10,30,31,32,45` in scope
[INFO] [stdout]   |
[INFO] [stdout]   = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout]   = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `posindex`
[INFO] [stdout]    --> src/panSV/algo.rs:182:25
[INFO] [stdout]     |
[INFO] [stdout] 182 | ///     2. intervals = [posindex]
[INFO] [stdout]     |                         ^^^^^^^^ no item named `posindex` in scope
[INFO] [stdout]     |
[INFO] [stdout]     = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unclosed HTML tag `PosIndex`
[INFO] [stdout]    --> src/panSV/algo.rs:264:54
[INFO] [stdout]     |
[INFO] [stdout] 264 | /// 3. output: (from_index, to_index, acc_index), Vec<PosIndex>)
[INFO] [stdout]     |                                                      ^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(rustdoc::invalid_html_tags)]` on by default
[INFO] [stdout] help: try marking as source code
[INFO] [stdout]     |
[INFO] [stdout] 264 | /// 3. output: (from_index, to_index, acc_index), `Vec<PosIndex>`)
[INFO] [stdout]     |                                                   +             +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 7.01s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/pan_sv/index.html
[INFO] running `Command { std: "docker" "inspect" "e8707fe546b369f0c4b0e694519e772f10db0f1dde8c1e1084707953b499a3eb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e8707fe546b369f0c4b0e694519e772f10db0f1dde8c1e1084707953b499a3eb", kill_on_drop: false }`
[INFO] [stdout] e8707fe546b369f0c4b0e694519e772f10db0f1dde8c1e1084707953b499a3eb
