[INFO] cloning repository https://github.com/PennLINC/uFixels [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/PennLINC/uFixels" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FPennLINC%2FuFixels", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FPennLINC%2FuFixels'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] dcf960695173117b569dedb7e81c5b4541e5c7af [INFO] documenting PennLINC/uFixels/dcf960695173117b569dedb7e81c5b4541e5c7af against 1.99.0-beta.1 for beta-rustdoc-1.99-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FPennLINC%2FuFixels" "/workspace/builds/worker-7-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/PennLINC/uFixels [INFO] finished tweaking git repo https://github.com/PennLINC/uFixels [INFO] tweaked toml for git repo https://github.com/PennLINC/uFixels written to /workspace/builds/worker-7-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/PennLINC/uFixels on toolchain 1.99.0-beta.1 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/PennLINC/uFixels already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:00c5645b54fe3ce5dae1417175e3c7fb6a6646c021d554ecd63a097b8b9f3602" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] 1a2b807f29ba53a7a808429096c5e1b73d6e2a1390bb77ee8beb2a59705b459e [INFO] running `Command { std: "docker" "start" "1a2b807f29ba53a7a808429096c5e1b73d6e2a1390bb77ee8beb2a59705b459e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1a2b807f29ba53a7a808429096c5e1b73d6e2a1390bb77ee8beb2a59705b459e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "1a2b807f29ba53a7a808429096c5e1b73d6e2a1390bb77ee8beb2a59705b459e" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "1a2b807f29ba53a7a808429096c5e1b73d6e2a1390bb77ee8beb2a59705b459e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "1a2b807f29ba53a7a808429096c5e1b73d6e2a1390bb77ee8beb2a59705b459e" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.1" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] Compiling memchr v2.8.2 [INFO] [stderr] Compiling regex-syntax v0.8.11 [INFO] [stderr] Compiling cc v1.2.65 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Checking simd-adler32 v0.3.9 [INFO] [stderr] Compiling syn v2.0.118 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Compiling hdf5-metno-types v0.11.1 [INFO] [stderr] Compiling proc-macro-crate v3.5.0 [INFO] [stderr] Checking ascii v1.1.0 [INFO] [stderr] Checking either v1.16.0 [INFO] [stderr] Compiling getrandom v0.4.3 [INFO] [stderr] Compiling hdf5-metno v0.12.6 [INFO] [stderr] Checking byteordered v0.6.0 [INFO] [stderr] Compiling rustix v1.1.4 [INFO] [stderr] Compiling pastey v0.2.3 [INFO] [stderr] Checking miniz_oxide v0.8.9 [INFO] [stderr] Compiling zip v2.4.2 [INFO] [stderr] Compiling fixed v1.29.0 [INFO] [stderr] Checking linux-raw-sys v0.12.1 [INFO] [stderr] Checking bumpalo v3.20.3 [INFO] [stderr] Checking quick-error v2.0.1 [INFO] [stderr] Checking crossbeam-deque v0.8.6 [INFO] [stderr] Checking az v1.3.0 [INFO] [stderr] Checking serde_json v1.0.150 [INFO] [stderr] Checking tracing-subscriber v0.3.23 [INFO] [stderr] Checking ordered-float v5.3.0 [INFO] [stderr] Checking memmap2 v0.9.11 [INFO] [stderr] Checking rayon-core v1.13.0 [INFO] [stderr] Checking sorted-vec v0.8.10 [INFO] [stderr] Checking flate2 v1.1.9 [INFO] [stderr] Checking zopfli v0.8.3 [INFO] [stderr] Compiling anyhow v1.0.103 [INFO] [stderr] Checking array-init v2.1.0 [INFO] [stderr] Checking divrem v1.0.0 [INFO] [stderr] Checking rayon v1.12.0 [INFO] [stderr] Checking lin_alg v1.4.3 [INFO] [stderr] Compiling aho-corasick v1.1.4 [INFO] [stderr] Compiling cmake v0.1.58 [INFO] [stderr] Compiling libz-sys v1.1.29 [INFO] [stderr] Compiling hdf5-metno-src v0.10.2 [INFO] [stderr] Compiling generator v0.8.9 [INFO] [stderr] Checking mcubes v0.1.7 [INFO] [stderr] Checking tempfile v3.27.0 [INFO] [stderr] Compiling regex-automata v0.4.14 [INFO] [stderr] Compiling bytemuck_derive v1.10.2 [INFO] [stderr] Compiling zerocopy-derive v0.8.52 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling thiserror-impl v2.0.18 [INFO] [stderr] Compiling clap_derive v4.6.1 [INFO] [stderr] Compiling num-derive v0.4.2 [INFO] [stderr] Compiling hdf5-metno-derive v0.10.1 [INFO] [stderr] Compiling equator-macro v0.4.2 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling displaydoc v0.2.6 [INFO] [stderr] Compiling tracing-attributes v0.1.31 [INFO] [stderr] Checking equator v0.4.2 [INFO] [stderr] Checking tracing v0.1.44 [INFO] [stderr] Checking aligned-vec v0.6.4 [INFO] [stderr] Checking thiserror v2.0.18 [INFO] [stderr] Checking gifti-rs v0.1.0 (https://github.com/PennLINC/gifti-rs?tag=v0.1.0#e21a6c44) [INFO] [stderr] Compiling regex v1.12.4 [INFO] [stderr] Checking bytemuck v1.25.0 [INFO] [stderr] Checking zerocopy v0.8.52 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Checking rgb v0.8.53 [INFO] [stderr] Compiling hdf5-metno-sys v0.12.0 [INFO] [stderr] Checking clap v4.6.1 [INFO] [stderr] Checking clap_complete v4.6.5 [INFO] [stderr] Checking wide v0.7.33 [INFO] [stderr] Checking ndarray v0.17.2 [INFO] [stderr] Checking ndarray v0.16.1 [INFO] [stderr] Checking serde v1.0.228 [INFO] [stderr] Checking simba v0.9.1 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Checking half v2.7.1 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking rand v0.8.6 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking nalgebra v0.33.3 [INFO] [stderr] Checking nifti v0.17.0 [INFO] [stderr] Checking statrs v0.18.0 [INFO] [stderr] Checking kiddo v5.3.2 [INFO] [stderr] Checking itk-transforms-rs v0.1.0 (https://github.com/PennLINC/itk-transforms-rs#ccd61d03) [INFO] [stderr] Checking trx-rs v0.1.0 (https://github.com/tee-ar-ex/trx-rs?tag=v0.1.0#0d4b9e2e) [INFO] [stderr] Checking odx-rs v0.1.3 (https://github.com/PennLINC/odx-rs?tag=v0.1.3#9493f31d) [INFO] [stderr] Checking odx-tractography v0.1.1 (https://github.com/PennLINC/odx-tractography?tag=v0.1.1#f9eef634) [INFO] [stderr] Checking ufixels v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Documenting ufixels v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unresolved link to `odx_tractography::propagate_ptt_one_way` [INFO] [stdout] --> src/connectivity.rs:16:7 [INFO] [stdout] | [INFO] [stdout] 16 | //! [`odx_tractography::propagate_ptt_one_way`] minus the reference gate. [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ no item named `propagate_ptt_one_way` in module `odx_tractography` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `0,1` [INFO] [stdout] --> src/fod2d.rs:34:67 [INFO] [stdout] | [INFO] [stdout] 34 | /// In-surface fraction `mean(amp) / (mean(amp) + radial)` ∈ [0,1]. Near 1 = [INFO] [stdout] | ^^^ no item named `0,1` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `dpf_reduction` [INFO] [stdout] --> src/qa_otsu_mode.rs:104:37 [INFO] [stdout] | [INFO] [stdout] 104 | /// to a per-voxel scalar via [`dpf_reduction`]. **Use this for SH- [INFO] [stdout] | ^^^^^^^^^^^^^ no item named `dpf_reduction` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `scalar_dpv` [INFO] [stdout] --> src/qa_otsu_mode.rs:109:48 [INFO] [stdout] | [INFO] [stdout] 109 | /// `"amplitude"`. Takes precedence over [`scalar_dpv`] when both are [INFO] [stdout] | ^^^^^^^^^^ no item named `scalar_dpv` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `scalar_dpf` [INFO] [stdout] --> src/qa_otsu_mode.rs:112:55 [INFO] [stdout] | [INFO] [stdout] 112 | /// Reduction applied to the per-fixel DPF when [`scalar_dpf`] is set. [INFO] [stdout] | ^^^^^^^^^^ no item named `scalar_dpf` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `normal::inward_normals_or_compute` [INFO] [stdout] --> src/swm_mesh.rs:4:12 [INFO] [stdout] | [INFO] [stdout] 4 | //! Uses [`normal::inward_normals_or_compute`] — paired pial→wm direction [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ no item named `normal` in scope [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `crate::lip_trace` [INFO] [stdout] --> src/bin/subdivide_by_lips.rs:13:28 [INFO] [stdout] | [INFO] [stdout] 13 | //! propagation (in [`crate::lip_trace`]) and QB-merge them. [INFO] [stdout] | ^^^^^^^^^^^^^^^^ no item named `lip_trace` in module `subdivide_by_lips` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 30s [INFO] [stderr] Generated /opt/rustwide/target/doc/ufixels/index.html and 22 other files [INFO] running `Command { std: "docker" "inspect" "1a2b807f29ba53a7a808429096c5e1b73d6e2a1390bb77ee8beb2a59705b459e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "DOCS_RS=1" "-e" "RUSTC_BOOTSTRAP=1" "-w" "/opt/rustwide/workdir" "--user" "0:0" "1a2b807f29ba53a7a808429096c5e1b73d6e2a1390bb77ee8beb2a59705b459e" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.1" "rustdoc" "--lib" "-Zrustdoc-map" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.106 [INFO] [stderr] Compiling thiserror v2.0.18 [INFO] [stderr] Compiling anyhow v1.0.103 [INFO] [stderr] Compiling quote v1.0.46 [INFO] [stderr] Compiling syn v2.0.118 [INFO] [stderr] Compiling bytemuck_derive v1.10.2 [INFO] [stderr] Compiling zerocopy-derive v0.8.52 [INFO] [stderr] Compiling thiserror-impl v2.0.18 [INFO] [stderr] Compiling nalgebra-macros v0.2.2 [INFO] [stderr] Compiling clap_derive v4.6.1 [INFO] [stderr] Compiling num-derive v0.4.2 [INFO] [stderr] Compiling hdf5-metno-derive v0.10.1 [INFO] [stderr] Compiling equator-macro v0.4.2 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling tracing-attributes v0.1.31 [INFO] [stderr] Compiling displaydoc v0.2.6 [INFO] [stderr] Checking equator v0.4.2 [INFO] [stderr] Checking aligned-vec v0.6.4 [INFO] [stderr] Checking zip v2.4.2 [INFO] [stderr] Checking gifti-rs v0.1.0 (https://github.com/PennLINC/gifti-rs?tag=v0.1.0#e21a6c44) [INFO] [stderr] Checking tracing v0.1.44 [INFO] [stderr] Checking clap v4.6.1 [INFO] [stderr] Checking clap_complete v4.6.5 [INFO] [stderr] Checking bytemuck v1.25.0 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Checking rgb v0.8.53 [INFO] [stderr] Checking zerocopy v0.8.52 [INFO] [stderr] Checking wide v0.7.33 [INFO] [stderr] Checking ndarray v0.17.2 [INFO] [stderr] Checking ndarray v0.16.1 [INFO] [stderr] Checking serde v1.0.228 [INFO] [stderr] Checking simba v0.9.1 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Checking half v2.7.1 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking fixed v1.29.0 [INFO] [stderr] Checking rand v0.8.6 [INFO] [stderr] Checking hdf5-metno v0.12.6 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking nalgebra v0.33.3 [INFO] [stderr] Checking nifti v0.17.0 [INFO] [stderr] Checking statrs v0.18.0 [INFO] [stderr] Checking kiddo v5.3.2 [INFO] [stderr] Checking itk-transforms-rs v0.1.0 (https://github.com/PennLINC/itk-transforms-rs#ccd61d03) [INFO] [stderr] Checking trx-rs v0.1.0 (https://github.com/tee-ar-ex/trx-rs?tag=v0.1.0#0d4b9e2e) [INFO] [stderr] Checking odx-rs v0.1.3 (https://github.com/PennLINC/odx-rs?tag=v0.1.3#9493f31d) [INFO] [stderr] Checking odx-tractography v0.1.1 (https://github.com/PennLINC/odx-tractography?tag=v0.1.1#f9eef634) [INFO] [stderr] Documenting ufixels v0.1.0 (/opt/rustwide/workdir) [INFO] [stdout] warning: unresolved link to `odx_tractography::propagate_ptt_one_way` [INFO] [stdout] --> src/connectivity.rs:16:7 [INFO] [stdout] | [INFO] [stdout] 16 | //! [`odx_tractography::propagate_ptt_one_way`] minus the reference gate. [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ no item named `propagate_ptt_one_way` in module `odx_tractography` [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `0,1` [INFO] [stdout] --> src/fod2d.rs:34:67 [INFO] [stdout] | [INFO] [stdout] 34 | /// In-surface fraction `mean(amp) / (mean(amp) + radial)` ∈ [0,1]. Near 1 = [INFO] [stdout] | ^^^ no item named `0,1` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `dpf_reduction` [INFO] [stdout] --> src/qa_otsu_mode.rs:104:37 [INFO] [stdout] | [INFO] [stdout] 104 | /// to a per-voxel scalar via [`dpf_reduction`]. **Use this for SH- [INFO] [stdout] | ^^^^^^^^^^^^^ no item named `dpf_reduction` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `scalar_dpv` [INFO] [stdout] --> src/qa_otsu_mode.rs:109:48 [INFO] [stdout] | [INFO] [stdout] 109 | /// `"amplitude"`. Takes precedence over [`scalar_dpv`] when both are [INFO] [stdout] | ^^^^^^^^^^ no item named `scalar_dpv` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `scalar_dpf` [INFO] [stdout] --> src/qa_otsu_mode.rs:112:55 [INFO] [stdout] | [INFO] [stdout] 112 | /// Reduction applied to the per-fixel DPF when [`scalar_dpf`] is set. [INFO] [stdout] | ^^^^^^^^^^ no item named `scalar_dpf` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `normal::inward_normals_or_compute` [INFO] [stdout] --> src/swm_mesh.rs:4:12 [INFO] [stdout] | [INFO] [stdout] 4 | //! Uses [`normal::inward_normals_or_compute`] — paired pial→wm direction [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ no item named `normal` in scope [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 38.26s [INFO] [stderr] Generated /opt/rustwide/target/doc/ufixels/index.html [INFO] running `Command { std: "docker" "inspect" "1a2b807f29ba53a7a808429096c5e1b73d6e2a1390bb77ee8beb2a59705b459e", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "1a2b807f29ba53a7a808429096c5e1b73d6e2a1390bb77ee8beb2a59705b459e", kill_on_drop: false }` [INFO] [stdout] 1a2b807f29ba53a7a808429096c5e1b73d6e2a1390bb77ee8beb2a59705b459e