[INFO] cloning repository https://github.com/MrObadiahEJ/NeuroKmer [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/MrObadiahEJ/NeuroKmer" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMrObadiahEJ%2FNeuroKmer", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMrObadiahEJ%2FNeuroKmer'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] b9a9ec248f411710f52bc2370358b9f556bfb9a3 [INFO] documenting MrObadiahEJ/NeuroKmer against 1.99.0-beta.1 for beta-rustdoc-1.99-1 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FMrObadiahEJ%2FNeuroKmer" "/workspace/builds/worker-7-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/MrObadiahEJ/NeuroKmer [INFO] finished tweaking git repo https://github.com/MrObadiahEJ/NeuroKmer [INFO] tweaked toml for git repo https://github.com/MrObadiahEJ/NeuroKmer written to /workspace/builds/worker-7-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/MrObadiahEJ/NeuroKmer on toolchain 1.99.0-beta.1 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/MrObadiahEJ/NeuroKmer already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:00c5645b54fe3ce5dae1417175e3c7fb6a6646c021d554ecd63a097b8b9f3602" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] edc08c3649a08a4314991d6ec5fc6de339b076777f2784683667a33ccd7725aa [INFO] running `Command { std: "docker" "start" "edc08c3649a08a4314991d6ec5fc6de339b076777f2784683667a33ccd7725aa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "edc08c3649a08a4314991d6ec5fc6de339b076777f2784683667a33ccd7725aa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "edc08c3649a08a4314991d6ec5fc6de339b076777f2784683667a33ccd7725aa" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "edc08c3649a08a4314991d6ec5fc6de339b076777f2784683667a33ccd7725aa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "edc08c3649a08a4314991d6ec5fc6de339b076777f2784683667a33ccd7725aa" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.1" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] Compiling libc v0.2.182 [INFO] [stderr] Compiling proc-macro2 v1.0.106 [INFO] [stderr] Compiling quote v1.0.44 [INFO] [stderr] Compiling unicode-ident v1.0.23 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling find-msvc-tools v0.1.9 [INFO] [stderr] Compiling autocfg v1.5.0 [INFO] [stderr] Checking cfg-if v1.0.4 [INFO] [stderr] Compiling libm v0.2.16 [INFO] [stderr] Compiling pkg-config v0.3.32 [INFO] [stderr] Checking memchr v2.8.0 [INFO] [stderr] Compiling zerocopy v0.8.39 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Checking rawpointer v0.2.1 [INFO] [stderr] Checking bytemuck v1.25.0 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Checking regex-syntax v0.8.9 [INFO] [stderr] Compiling proc-macro2 v0.4.30 [INFO] [stderr] Compiling paste v1.0.15 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Checking utf8parse v0.2.2 [INFO] [stderr] Compiling rustversion v1.0.22 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Checking aho-corasick v1.1.4 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Compiling typenum v1.19.0 [INFO] [stderr] Compiling unicode-xid v0.1.0 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Checking wide v0.7.33 [INFO] [stderr] Checking anstyle-parse v0.2.7 [INFO] [stderr] Compiling crc32fast v1.5.0 [INFO] [stderr] Compiling zstd-safe v7.2.4 [INFO] [stderr] Compiling syn v0.15.44 [INFO] [stderr] Checking anstyle v1.0.13 [INFO] [stderr] Compiling feature-probe v0.1.1 [INFO] [stderr] Checking is_terminal_polyfill v1.70.2 [INFO] [stderr] Checking colorchoice v1.0.4 [INFO] [stderr] Checking anstyle-query v1.1.5 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling bv v0.11.1 [INFO] [stderr] Checking crossbeam-epoch v0.9.18 [INFO] [stderr] Checking anstream v0.6.21 [INFO] [stderr] Compiling quote v0.6.13 [INFO] [stderr] Compiling rayon-core v1.13.0 [INFO] [stderr] Compiling jobserver v0.1.34 [INFO] [stderr] Checking getrandom v0.2.17 [INFO] [stderr] Compiling parking_lot_core v0.9.12 [INFO] [stderr] Compiling syn v2.0.115 [INFO] [stderr] Compiling anyhow v1.0.101 [INFO] [stderr] Checking rand_core v0.10.0 [INFO] [stderr] Checking foldhash v0.1.5 [INFO] [stderr] Checking adler2 v2.0.1 [INFO] [stderr] Checking regex-automata v0.4.14 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Checking simd-adler32 v0.3.8 [INFO] [stderr] Compiling thiserror v2.0.18 [INFO] [stderr] Checking hashbrown v0.16.1 [INFO] [stderr] Compiling cc v1.2.56 [INFO] [stderr] Compiling getrandom v0.4.1 [INFO] [stderr] Compiling proc-macro-error-attr2 v2.0.0 [INFO] [stderr] Checking either v1.15.0 [INFO] [stderr] Checking hashbrown v0.15.5 [INFO] [stderr] Checking crossbeam-deque v0.8.6 [INFO] [stderr] Checking csv-core v0.1.13 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking indexmap v2.13.0 [INFO] [stderr] Checking clap_lex v1.0.0 [INFO] [stderr] Checking miniz_oxide v0.8.9 [INFO] [stderr] Checking strsim v0.11.1 [INFO] [stderr] Checking smallvec v1.15.1 [INFO] [stderr] Checking scopeguard v1.2.0 [INFO] [stderr] Checking bytecount v0.6.9 [INFO] [stderr] Checking bit-vec v0.8.0 [INFO] [stderr] Checking cpufeatures v0.3.0 [INFO] [stderr] Checking lazy_static v1.5.0 [INFO] [stderr] Checking fixedbitset v0.5.7 [INFO] [stderr] Checking byteorder v1.5.0 [INFO] [stderr] Checking ryu v1.0.23 [INFO] [stderr] Checking itoa v1.0.17 [INFO] [stderr] Checking log v0.4.29 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Checking bit-set v0.8.0 [INFO] [stderr] Checking chacha20 v0.10.0 [INFO] [stderr] Checking simba v0.9.1 [INFO] [stderr] Checking csv v1.4.0 [INFO] [stderr] Checking fxhash v0.2.1 [INFO] [stderr] Checking ndarray v0.16.1 [INFO] [stderr] Checking clap_builder v4.5.58 [INFO] [stderr] Checking lock_api v0.4.14 [INFO] [stderr] Checking flate2 v1.1.9 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking ordered-float v5.1.0 [INFO] [stderr] Checking itertools v0.14.0 [INFO] [stderr] Checking buffer-redux v1.1.0 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking jiff v0.2.20 [INFO] [stderr] Checking arrayvec v0.7.6 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking arrayref v0.3.9 [INFO] [stderr] Checking cpufeatures v0.2.17 [INFO] [stderr] Checking hashbrown v0.14.5 [INFO] [stderr] Checking strum v0.26.3 [INFO] [stderr] Checking petgraph v0.8.3 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking constant_time_eq v0.4.2 [INFO] [stderr] Checking rayon v1.11.0 [INFO] [stderr] Checking rand v0.10.0 [INFO] [stderr] Checking ndarray v0.17.2 [INFO] [stderr] Checking regex v1.12.3 [INFO] [stderr] Compiling zstd-sys v2.0.16+zstd.1.5.7 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Compiling liblzma-sys v0.3.13 [INFO] [stderr] Compiling blake3 v1.8.3 [INFO] [stderr] Checking bzip2 v0.4.4 [INFO] [stderr] Checking env_filter v1.0.0 [INFO] [stderr] Checking dashmap v6.1.0 [INFO] [stderr] Checking liblzma v0.3.6 [INFO] [stderr] Checking crossbeam-channel v0.5.15 [INFO] [stderr] Checking siphasher v1.0.2 [INFO] [stderr] Compiling derefable v0.1.0 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Compiling proc-macro-error2 v2.0.1 [INFO] [stderr] Checking rand v0.8.5 [INFO] [stderr] Checking env_logger v0.11.9 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling thiserror-impl v2.0.18 [INFO] [stderr] Compiling clap_derive v4.5.55 [INFO] [stderr] Compiling getset v0.1.6 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking thiserror v1.0.69 [INFO] [stderr] Checking nalgebra v0.33.2 [INFO] [stderr] Checking clap v4.5.58 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking multimap v0.10.1 [INFO] [stderr] Checking zstd v0.13.3 [INFO] [stderr] Checking needletail v0.6.3 [INFO] [stderr] Checking statrs v0.18.0 [INFO] [stderr] Checking bio v3.0.0 [INFO] [stderr] Documenting neurokmer v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 43.62s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: proc-macro-error2 v2.0.1 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] [stderr] Generated /opt/rustwide/target/doc/neurokmer/index.html [INFO] running `Command { std: "docker" "inspect" "edc08c3649a08a4314991d6ec5fc6de339b076777f2784683667a33ccd7725aa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "DOCS_RS=1" "-e" "RUSTC_BOOTSTRAP=1" "-w" "/opt/rustwide/workdir" "--user" "0:0" "edc08c3649a08a4314991d6ec5fc6de339b076777f2784683667a33ccd7725aa" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.1" "rustdoc" "--lib" "-Zrustdoc-map" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.106 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling thiserror v2.0.18 [INFO] [stderr] Compiling anyhow v1.0.101 [INFO] [stderr] Compiling quote v1.0.44 [INFO] [stderr] Compiling syn v2.0.115 [INFO] [stderr] Compiling proc-macro-error-attr2 v2.0.0 [INFO] [stderr] Compiling proc-macro-error2 v2.0.1 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling thiserror-impl v2.0.18 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling getset v0.1.6 [INFO] [stderr] Compiling clap_derive v4.5.55 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Checking clap v4.5.58 [INFO] [stderr] Checking serde v1.0.228 [INFO] [stderr] Checking multimap v0.10.1 [INFO] [stderr] Checking bv v0.11.1 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking bio v3.0.0 [INFO] [stderr] Documenting neurokmer v0.1.0 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 18.58s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: proc-macro-error2 v2.0.1 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1` [INFO] [stderr] Generated /opt/rustwide/target/doc/neurokmer/index.html [INFO] running `Command { std: "docker" "inspect" "edc08c3649a08a4314991d6ec5fc6de339b076777f2784683667a33ccd7725aa", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "edc08c3649a08a4314991d6ec5fc6de339b076777f2784683667a33ccd7725aa", kill_on_drop: false }` [INFO] [stdout] edc08c3649a08a4314991d6ec5fc6de339b076777f2784683667a33ccd7725aa