[INFO] fetching crate perbase 1.4.0...
[INFO] documenting perbase-1.4.0 against 1.97.0-beta.6 for beta-rustdoc-1.98-1
[INFO] extracting crate perbase 1.4.0 into /workspace/builds/worker-2-tc1/source
[INFO] started tweaking crates.io crate perbase 1.4.0
[INFO] removed 0 missing examples
[INFO] finished tweaking crates.io crate perbase 1.4.0
[INFO] tweaked toml for crates.io crate perbase 1.4.0 written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate perbase 1.4.0 on toolchain 1.97.0-beta.6
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.97.0-beta.6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate perbase 1.4.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.97.0-beta.6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d5ced03c013a94a2f102a4510f48a6e9184255caf5fd8244f58017bde7f5210" "sleep" "infinity", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "start" "b43689cc4c2f9754e65e8e4bb66275e21e21a7828e5c68c7c411202cd1b7dcfc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b43689cc4c2f9754e65e8e4bb66275e21e21a7828e5c68c7c411202cd1b7dcfc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "b43689cc4c2f9754e65e8e4bb66275e21e21a7828e5c68c7c411202cd1b7dcfc" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b43689cc4c2f9754e65e8e4bb66275e21e21a7828e5c68c7c411202cd1b7dcfc", kill_on_drop: false }`
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[INFO] [stderr]     Checking perbase v1.4.0 (/opt/rustwide/workdir)
[INFO] [stderr]  Documenting perbase v1.4.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: redundant explicit link target
[INFO] [stdout]   --> src/lib/par_granges.rs:93:70
[INFO] [stdout]    |
[INFO] [stdout] 93 |     /// * `processor`- Something that implements [`RegionProcessor`](RegionProcessor)
[INFO] [stdout]    |                                                   -----------------  ^^^^^^^^^^^^^^^ explicit target is redundant
[INFO] [stdout]    |                                                   |
[INFO] [stdout]    |                                                   because label contains path that resolves to same destination
[INFO] [stdout]    |
[INFO] [stdout]    = note: when a link's destination is not specified,
[INFO] [stdout]            the label is used to resolve intra-doc links
[INFO] [stdout]    = note: `#[warn(rustdoc::redundant_explicit_links)]` on by default
[INFO] [stdout] help: remove explicit link target
[INFO] [stdout]    |
[INFO] [stdout] 93 -     /// * `processor`- Something that implements [`RegionProcessor`](RegionProcessor)
[INFO] [stdout] 93 +     /// * `processor`- Something that implements [`RegionProcessor`]
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]  --> src/lib/reference.rs:3:19
[INFO] [stdout]   |
[INFO] [stdout] 3 | //! Borrowed from https://github.com/varlociraptor/varlociraptor/blob/master/src/reference.rs
[INFO] [stdout]   |                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout]   = note: `#[warn(rustdoc::bare_urls)]` on by default
[INFO] [stdout] help: use an automatic link instead
[INFO] [stdout]   |
[INFO] [stdout] 3 | //! Borrowed from <https://github.com/varlociraptor/varlociraptor/blob/master/src/reference.rs>
[INFO] [stdout]   |                   +                                                                           +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `par_io::RegionProcessor`
[INFO] [stdout]    --> src/commands/base_depth.rs:168:32
[INFO] [stdout]     |
[INFO] [stdout] 168 | /// Holds the info needed for [par_io::RegionProcessor] implementation
[INFO] [stdout]     |                                ^^^^^^^^^^^^^^^^^^^^^^^ no item named `par_io` in scope
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `position::ReadFilter`
[INFO] [stdout]    --> src/commands/base_depth.rs:184:28
[INFO] [stdout]     |
[INFO] [stdout] 184 |     /// implementation of [position::ReadFilter] that will be used
[INFO] [stdout]     |                            ^^^^^^^^^^^^^^^^^^^^ no item named `position` in scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `par_io::RegionProcessor`
[INFO] [stdout]    --> src/commands/base_depth.rs:232:16
[INFO] [stdout]     |
[INFO] [stdout] 232 | /// Implement [par_io::RegionProcessor] for [BaseProcessor]
[INFO] [stdout]     |                ^^^^^^^^^^^^^^^^^^^^^^^ no item named `par_io` in scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `par_io::RegionProcessor`
[INFO] [stdout]    --> src/commands/only_depth.rs:186:32
[INFO] [stdout]     |
[INFO] [stdout] 186 | /// Holds the info needed for [par_io::RegionProcessor] implementation
[INFO] [stdout]     |                                ^^^^^^^^^^^^^^^^^^^^^^^ no item named `par_io` in scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `position::ReadFilter`
[INFO] [stdout]    --> src/commands/only_depth.rs:200:28
[INFO] [stdout]     |
[INFO] [stdout] 200 |     /// implementation of [position::ReadFilter] that will be used
[INFO] [stdout]     |                            ^^^^^^^^^^^^^^^^^^^^ no item named `position` in scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `par_io::RegionProcessor`
[INFO] [stdout]    --> src/commands/only_depth.rs:461:16
[INFO] [stdout]     |
[INFO] [stdout] 461 | /// Implement [par_io::RegionProcessor] for [SimpleProcessor]
[INFO] [stdout]     |                ^^^^^^^^^^^^^^^^^^^^^^^ no item named `par_io` in scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `SimpleProcessor`
[INFO] [stdout]    --> src/commands/only_depth.rs:461:46
[INFO] [stdout]     |
[INFO] [stdout] 461 | /// Implement [par_io::RegionProcessor] for [SimpleProcessor]
[INFO] [stdout]     |                                              ^^^^^^^^^^^^^^^ no item named `SimpleProcessor` in scope
[INFO] [stdout]     |
[INFO] [stdout]     = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `pipeup_position::PileupPosition`
[INFO] [stdout]    --> src/commands/base_depth.rs:234:21
[INFO] [stdout]     |
[INFO] [stdout] 234 |     /// Objects of [pipeup_position::PileupPosition] will be returned by each call to [BaseProcessor::process_region]
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ no item named `pipeup_position` in scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `position::Position`
[INFO] [stdout]    --> src/commands/only_depth.rs:463:21
[INFO] [stdout]     |
[INFO] [stdout] 463 |     /// Objects of [position::Position] will be returned by each call to [SimpleProcessor::process_region]
[INFO] [stdout]     |                     ^^^^^^^^^^^^^^^^^^ no item named `position` in scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unresolved link to `SimpleProcessor::process_region`
[INFO] [stdout]    --> src/commands/only_depth.rs:463:75
[INFO] [stdout]     |
[INFO] [stdout] 463 |     /// Objects of [position::Position] will be returned by each call to [SimpleProcessor::process_region]
[INFO] [stdout]     |                                                                           ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ no item named `SimpleProcessor` in scope
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unclosed HTML tag `chrom`
[INFO] [stdout]   --> src/commands/merge_adjacent.rs:12:55
[INFO] [stdout]    |
[INFO] [stdout] 12 | /// Generally accepts any file with no header that is <chrom>\t<start>\t<stop>\t<depth>.
[INFO] [stdout]    |                                                       ^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(rustdoc::invalid_html_tags)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unclosed HTML tag `start`
[INFO] [stdout]   --> src/commands/merge_adjacent.rs:12:64
[INFO] [stdout]    |
[INFO] [stdout] 12 | /// Generally accepts any file with no header that is <chrom>\t<start>\t<stop>\t<depth>.
[INFO] [stdout]    |                                                                ^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout] help: try marking as source code
[INFO] [stdout]    |
[INFO] [stdout] 12 | /// Generally accepts any file with no header that is <chrom>\`t<start>`\t<stop>\t<depth>.
[INFO] [stdout]    |                                                               +        +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unclosed HTML tag `stop`
[INFO] [stdout]   --> src/commands/merge_adjacent.rs:12:73
[INFO] [stdout]    |
[INFO] [stdout] 12 | /// Generally accepts any file with no header that is <chrom>\t<start>\t<stop>\t<depth>.
[INFO] [stdout]    |                                                                         ^^^^^^
[INFO] [stdout]    |
[INFO] [stdout] help: try marking as source code
[INFO] [stdout]    |
[INFO] [stdout] 12 | /// Generally accepts any file with no header that is <chrom>\t<start>\`t<stop>`\t<depth>.
[INFO] [stdout]    |                                                                        +       +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unclosed HTML tag `depth`
[INFO] [stdout]   --> src/commands/merge_adjacent.rs:12:81
[INFO] [stdout]    |
[INFO] [stdout] 12 | /// Generally accepts any file with no header that is <chrom>\t<start>\t<stop>\t<depth>.
[INFO] [stdout]    |                                                                                 ^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout] help: try marking as source code
[INFO] [stdout]    |
[INFO] [stdout] 12 | /// Generally accepts any file with no header that is <chrom>\t<start>\t<stop>\`t<depth>`.
[INFO] [stdout]    |                                                                                +        +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unclosed HTML tag `stop`
[INFO] [stdout]   --> src/commands/merge_adjacent.rs:13:9
[INFO] [stdout]    |
[INFO] [stdout] 13 | /// The <stop> is optional. See documentation for explanation of headers that are accepted.
[INFO] [stdout]    |         ^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 06s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1, proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] [stderr]    Generated /opt/rustwide/target/doc/perbase_lib/index.html and 1 other file
[INFO] running `Command { std: "docker" "inspect" "b43689cc4c2f9754e65e8e4bb66275e21e21a7828e5c68c7c411202cd1b7dcfc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "DOCS_RS=1" "-e" "RUSTC_BOOTSTRAP=1" "-w" "/opt/rustwide/workdir" "--user" "0:0" "b43689cc4c2f9754e65e8e4bb66275e21e21a7828e5c68c7c411202cd1b7dcfc" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "rustdoc" "--lib" "-Zrustdoc-map" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.103
[INFO] [stderr]    Compiling thiserror v2.0.17
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling anyhow v1.0.100
[INFO] [stderr]    Compiling quote v1.0.42
[INFO] [stderr]    Compiling syn v2.0.111
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling proc-macro-error-attr2 v2.0.0
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling structopt-derive v0.4.18
[INFO] [stderr]     Checking nalgebra v0.27.1
[INFO] [stderr]     Checking enum-map v1.1.1
[INFO] [stderr]    Compiling synstructure v0.13.2
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr]    Compiling zerofrom-derive v0.1.6
[INFO] [stderr]    Compiling yoke-derive v0.8.1
[INFO] [stderr]    Compiling zerovec-derive v0.11.2
[INFO] [stderr]    Compiling displaydoc v0.2.5
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling thiserror-impl v2.0.17
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling strum_macros v0.27.2
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]    Compiling getset v0.1.6
[INFO] [stderr]     Checking zerofrom v0.1.6
[INFO] [stderr]     Checking strum v0.27.2
[INFO] [stderr]     Checking yoke v0.8.1
[INFO] [stderr]     Checking gzp v2.0.2
[INFO] [stderr]     Checking zerovec v0.11.5
[INFO] [stderr]     Checking zerotrie v0.2.3
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking tinystr v0.8.2
[INFO] [stderr]     Checking potential_utf v0.1.4
[INFO] [stderr]     Checking icu_collections v2.1.1
[INFO] [stderr]     Checking icu_locale_core v2.1.1
[INFO] [stderr]     Checking serde v1.0.228
[INFO] [stderr]     Checking icu_provider v2.1.1
[INFO] [stderr]     Checking icu_properties v2.1.2
[INFO] [stderr]     Checking icu_normalizer v2.1.1
[INFO] [stderr]     Checking vec_map v0.8.2
[INFO] [stderr]     Checking multimap v0.8.3
[INFO] [stderr]     Checking bv v0.11.1
[INFO] [stderr]     Checking smartstring v1.0.1
[INFO] [stderr]     Checking clap v2.34.0
[INFO] [stderr]     Checking idna_adapter v1.2.1
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]     Checking url v2.5.7
[INFO] [stderr]    Compiling hts-sys v2.2.0
[INFO] [stderr]     Checking structopt v0.3.26
[INFO] [stderr]     Checking statrs v0.15.0
[INFO] [stderr]     Checking bio v3.0.0
[INFO] [stderr]     Checking rust-htslib v0.51.0
[INFO] [stderr]  Documenting perbase v1.4.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: redundant explicit link target
[INFO] [stdout]   --> src/lib/par_granges.rs:93:70
[INFO] [stdout]    |
[INFO] [stdout] 93 |     /// * `processor`- Something that implements [`RegionProcessor`](RegionProcessor)
[INFO] [stdout]    |                                                   -----------------  ^^^^^^^^^^^^^^^ explicit target is redundant
[INFO] [stdout]    |                                                   |
[INFO] [stdout]    |                                                   because label contains path that resolves to same destination
[INFO] [stdout]    |
[INFO] [stdout]    = note: when a link's destination is not specified,
[INFO] [stdout]            the label is used to resolve intra-doc links
[INFO] [stdout]    = note: `#[warn(rustdoc::redundant_explicit_links)]` on by default
[INFO] [stdout] help: remove explicit link target
[INFO] [stdout]    |
[INFO] [stdout] 93 -     /// * `processor`- Something that implements [`RegionProcessor`](RegionProcessor)
[INFO] [stdout] 93 +     /// * `processor`- Something that implements [`RegionProcessor`]
[INFO] [stdout]    |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]  --> src/lib/reference.rs:3:19
[INFO] [stdout]   |
[INFO] [stdout] 3 | //! Borrowed from https://github.com/varlociraptor/varlociraptor/blob/master/src/reference.rs
[INFO] [stdout]   |                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout]   = note: `#[warn(rustdoc::bare_urls)]` on by default
[INFO] [stdout] help: use an automatic link instead
[INFO] [stdout]   |
[INFO] [stdout] 3 | //! Borrowed from <https://github.com/varlociraptor/varlociraptor/blob/master/src/reference.rs>
[INFO] [stdout]   |                   +                                                                           +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 39.43s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: nalgebra v0.27.1, proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] [stderr]    Generated /opt/rustwide/target/doc/perbase_lib/index.html
[INFO] running `Command { std: "docker" "inspect" "b43689cc4c2f9754e65e8e4bb66275e21e21a7828e5c68c7c411202cd1b7dcfc", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b43689cc4c2f9754e65e8e4bb66275e21e21a7828e5c68c7c411202cd1b7dcfc", kill_on_drop: false }`
[INFO] [stdout] b43689cc4c2f9754e65e8e4bb66275e21e21a7828e5c68c7c411202cd1b7dcfc
