[INFO] cloning repository https://github.com/David-OConnor/plasmid_check
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/David-OConnor/plasmid_check" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FDavid-OConnor%2Fplasmid_check", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FDavid-OConnor%2Fplasmid_check'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 717459dcd780ec4266e9a2aa15297eae31956da5
[INFO] documenting David-OConnor/plasmid_check against 1.97.0-beta.6 for beta-rustdoc-1.98-1
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FDavid-OConnor%2Fplasmid_check" "/workspace/builds/worker-1-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-1-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/David-OConnor/plasmid_check
[INFO] finished tweaking git repo https://github.com/David-OConnor/plasmid_check
[INFO] tweaked toml for git repo https://github.com/David-OConnor/plasmid_check written to /workspace/builds/worker-1-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/David-OConnor/plasmid_check on toolchain 1.97.0-beta.6
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.97.0-beta.6" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/David-OConnor/plasmid_check already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.97.0-beta.6" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
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[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-1-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:3d5ced03c013a94a2f102a4510f48a6e9184255caf5fd8244f58017bde7f5210" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] e2fea19852299929547f14394a4b0c59caea9e5ce32ecb07cc296de094f218ab
[INFO] running `Command { std: "docker" "start" "e2fea19852299929547f14394a4b0c59caea9e5ce32ecb07cc296de094f218ab", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e2fea19852299929547f14394a4b0c59caea9e5ce32ecb07cc296de094f218ab", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "e2fea19852299929547f14394a4b0c59caea9e5ce32ecb07cc296de094f218ab" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e2fea19852299929547f14394a4b0c59caea9e5ce32ecb07cc296de094f218ab", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "e2fea19852299929547f14394a4b0c59caea9e5ce32ecb07cc296de094f218ab" "/opt/rustwide/cargo-home/bin/cargo" "+1.97.0-beta.6" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
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[INFO] [stderr]     Checking accesskit_unix v0.13.1
[INFO] [stderr]     Checking accesskit_winit v0.23.1
[INFO] [stderr]     Checking egui-winit v0.31.0
[INFO] [stderr]     Checking eframe v0.31.0
[INFO] [stderr]  Documenting plascad v0.7.9 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unresolved link to `s`
[INFO] [stdout]  --> src/file_io/save.rs:3:105
[INFO] [stdout]   |
[INFO] [stdout] 3 | //! Todo: Break into packets. This may require further ejecting from bincode, at least at the top level[s].
[INFO] [stdout]   |                                                                                                         ^ no item named `s` in scope
[INFO] [stdout]   |
[INFO] [stdout]   = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout]   = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]  --> src/external_websites.rs:3:21
[INFO] [stdout]   |
[INFO] [stdout] 3 | //! PDB Search API: https://search.rcsb.org/#search-api
[INFO] [stdout]   |                     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout]   = note: `#[warn(rustdoc::bare_urls)]` on by default
[INFO] [stdout] help: use an automatic link instead
[INFO] [stdout]   |
[INFO] [stdout] 3 | //! PDB Search API: <https://search.rcsb.org/#search-api>
[INFO] [stdout]   |                     +                                   +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]  --> src/external_websites.rs:4:19
[INFO] [stdout]   |
[INFO] [stdout] 4 | //! PDB Data API: https://data.rcsb.org/#data-api
[INFO] [stdout]   |                   ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout] help: use an automatic link instead
[INFO] [stdout]   |
[INFO] [stdout] 4 | //! PDB Data API: <https://data.rcsb.org/#data-api>
[INFO] [stdout]   |                   +                               +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]  --> src/feature_db_load.rs:5:24
[INFO] [stdout]   |
[INFO] [stdout] 5 | //! Some common genes: https://en.vectorbuilder.com/search/gene.html
[INFO] [stdout]   |                        ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout] help: use an automatic link instead
[INFO] [stdout]   |
[INFO] [stdout] 5 | //! Some common genes: <https://en.vectorbuilder.com/search/gene.html>
[INFO] [stdout]   |                        +                                             +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]  --> src/file_io/genbank.rs:5:29
[INFO] [stdout]   |
[INFO] [stdout] 5 | //! (NIH article on GenBank)[https://www.ncbi.nlm.nih.gov/genbank/]
[INFO] [stdout]   |                             ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout] help: use an automatic link instead
[INFO] [stdout]   |
[INFO] [stdout] 5 - //! (NIH article on GenBank)[https://www.ncbi.nlm.nih.gov/genbank/]
[INFO] [stdout] 5 + //! (NIH article on GenBank)<https://www.ncbi.nlm.nih.gov/genbank/>
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]  --> src/file_io/snapgene.rs:4:41
[INFO] [stdout]   |
[INFO] [stdout] 4 | //! (Unofficial file format description)[https://incenp.org/dvlpt/docs/binary-sequence-formats/binary-sequence-formats.pdf]
[INFO] [stdout]   |                                         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]   |
[INFO] [stdout]   = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout] help: use an automatic link instead
[INFO] [stdout]   |
[INFO] [stdout] 4 - //! (Unofficial file format description)[https://incenp.org/dvlpt/docs/binary-sequence-formats/binary-sequence-formats.pdf]
[INFO] [stdout] 4 + //! (Unofficial file format description)<https://incenp.org/dvlpt/docs/binary-sequence-formats/binary-sequence-formats.pdf>
[INFO] [stdout]   |
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]   --> src/gui/mod.rs:15:17
[INFO] [stdout]    |
[INFO] [stdout] 15 | //! Also maybe: http://jslegers.github.io/emoji-icon-font/
[INFO] [stdout]    |                 ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout] help: use an automatic link instead
[INFO] [stdout]    |
[INFO] [stdout] 15 | //! Also maybe: <http://jslegers.github.io/emoji-icon-font/>
[INFO] [stdout]    |                 +                                          +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]   --> src/gui/mod.rs:16:5
[INFO] [stdout]    |
[INFO] [stdout] 16 | //! https://fonts.google.com/noto/specimen/Noto+Emoji
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout] help: use an automatic link instead
[INFO] [stdout]    |
[INFO] [stdout] 16 | //! <https://fonts.google.com/noto/specimen/Noto+Emoji>
[INFO] [stdout]    |     +                                                 +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unclosed HTML tag `String`
[INFO] [stdout]   --> src/gui/metadata.rs:16:60
[INFO] [stdout]    |
[INFO] [stdout] 16 | /// A convenience function to create a text edit for Option<String>
[INFO] [stdout]    |                                                            ^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(rustdoc::invalid_html_tags)]` on by default
[INFO] [stdout] help: try marking as source code
[INFO] [stdout]    |
[INFO] [stdout] 16 | /// A convenience function to create a text edit for `Option<String>`
[INFO] [stdout]    |                                                      +              +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]    --> src/melting_temp_calcs.rs:188:5
[INFO] [stdout]     |
[INFO] [stdout] 188 | /// https://github.com/biopython/biopython/blob/master/Bio/SeqUtils/MeltingTemp.py#L475
[INFO] [stdout]     |     ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout] help: use an automatic link instead
[INFO] [stdout]     |
[INFO] [stdout] 188 | /// <https://github.com/biopython/biopython/blob/master/Bio/SeqUtils/MeltingTemp.py#L475>
[INFO] [stdout]     |     +                                                                                   +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]   --> src/primer_metrics.rs:34:9
[INFO] [stdout]    |
[INFO] [stdout] 34 |     /// https://www.benchling.com/primer-design-for-pcr
[INFO] [stdout]    |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout] help: use an automatic link instead
[INFO] [stdout]    |
[INFO] [stdout] 34 |     /// <https://www.benchling.com/primer-design-for-pcr>
[INFO] [stdout]    |         +                                               +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]    --> src/primer_metrics.rs:155:9
[INFO] [stdout]     |
[INFO] [stdout] 155 |     /// https://primerexplorer.jp/e/v4_manual/03.html (Different formula)
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout] help: use an automatic link instead
[INFO] [stdout]     |
[INFO] [stdout] 155 |     /// <https://primerexplorer.jp/e/v4_manual/03.html> (Different formula)
[INFO] [stdout]     |         +                                             +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]    --> src/primer_metrics.rs:157:9
[INFO] [stdout]     |
[INFO] [stdout] 157 |     /// https://www.rosalind.bio/en/knowledge/what-formula-is-used-to-calculate-tm
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout] help: use an automatic link instead
[INFO] [stdout]     |
[INFO] [stdout] 157 |     /// <https://www.rosalind.bio/en/knowledge/what-formula-is-used-to-calculate-tm>
[INFO] [stdout]     |         +                                                                          +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: this URL is not a hyperlink
[INFO] [stdout]    --> src/primer_metrics.rs:205:9
[INFO] [stdout]     |
[INFO] [stdout] 205 |     /// http://www.premierbiosoft.com/tech_notes/PCR_Primer_Design.html
[INFO] [stdout]     |         ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]     |
[INFO] [stdout]     = note: bare URLs are not automatically turned into clickable links
[INFO] [stdout] help: use an automatic link instead
[INFO] [stdout]     |
[INFO] [stdout] 205 |     /// <http://www.premierbiosoft.com/tech_notes/PCR_Primer_Design.html>
[INFO] [stdout]     |         +                                                               +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 41s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] [stderr]    Generated /opt/rustwide/target/doc/plascad/index.html
[INFO] running `Command { std: "docker" "inspect" "e2fea19852299929547f14394a4b0c59caea9e5ce32ecb07cc296de094f218ab", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e2fea19852299929547f14394a4b0c59caea9e5ce32ecb07cc296de094f218ab", kill_on_drop: false }`
[INFO] [stdout] e2fea19852299929547f14394a4b0c59caea9e5ce32ecb07cc296de094f218ab
