[INFO] cloning repository https://github.com/Adoni5/cnv_from_bam
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Adoni5/cnv_from_bam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Fcnv_from_bam", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Fcnv_from_bam'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] c537c911efb519f10579a1dab8612025edf0c1ad
[INFO] documenting Adoni5/cnv_from_bam against beta-2025-09-21 for beta-rustdoc-1.91-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FAdoni5%2Fcnv_from_bam" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/Adoni5/cnv_from_bam
[INFO] finished tweaking git repo https://github.com/Adoni5/cnv_from_bam
[INFO] tweaked toml for git repo https://github.com/Adoni5/cnv_from_bam written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/Adoni5/cnv_from_bam on toolchain beta-2025-09-21
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "generate-lockfile" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]      Locking 97 packages to latest Rust 1.91.0-beta.3 compatible versions
[INFO] [stderr]       Adding noodles v0.99.0 (available: v0.101.0)
[INFO] [stderr]       Adding noodles-bgzf v0.41.0 (available: v0.43.0)
[INFO] [stderr]       Adding pyo3 v0.25.1 (available: v0.26.0)
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 6aa0468bb883e530203cefc616c68f62ef680e95ee2c958b890158dcff01926e
[INFO] running `Command { std: "docker" "start" "-a" "6aa0468bb883e530203cefc616c68f62ef680e95ee2c958b890158dcff01926e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6aa0468bb883e530203cefc616c68f62ef680e95ee2c958b890158dcff01926e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6aa0468bb883e530203cefc616c68f62ef680e95ee2c958b890158dcff01926e", kill_on_drop: false }`
[INFO] [stdout] 6aa0468bb883e530203cefc616c68f62ef680e95ee2c958b890158dcff01926e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 0fc4ad91124d2d2c96d733d0fdea7a3df382629030a7ce86fa3ceb1eff084796
[INFO] running `Command { std: "docker" "start" "-a" "0fc4ad91124d2d2c96d733d0fdea7a3df382629030a7ce86fa3ceb1eff084796", kill_on_drop: false }`
[INFO] [stderr]    Compiling target-lexicon v0.13.3
[INFO] [stderr]    Compiling once_cell v1.21.3
[INFO] [stderr]    Compiling libc v0.2.176
[INFO] [stderr]    Compiling find-msvc-tools v0.1.2
[INFO] [stderr]     Checking lexical-util v1.0.7
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]     Checking zlib-rs v0.5.2
[INFO] [stderr]    Compiling proc-macro2 v1.0.101
[INFO] [stderr]    Compiling unicode-ident v1.0.19
[INFO] [stderr]     Checking regex-automata v0.4.11
[INFO] [stderr]     Checking memchr v2.7.6
[INFO] [stderr]     Checking bytes v1.10.1
[INFO] [stderr]     Checking bitflags v2.9.4
[INFO] [stderr]     Checking hashbrown v0.16.0
[INFO] [stderr]     Checking crossbeam-channel v0.5.15
[INFO] [stderr]     Checking smallvec v1.15.1
[INFO] [stderr]     Checking bit-vec v0.8.0
[INFO] [stderr]    Compiling cfg_aliases v0.2.1
[INFO] [stderr]    Compiling memoffset v0.9.1
[INFO] [stderr]    Compiling portable-atomic v1.11.1
[INFO] [stderr]    Compiling nix v0.30.1
[INFO] [stderr]     Checking unicode-width v0.2.1
[INFO] [stderr]    Compiling cc v1.2.38
[INFO] [stderr]     Checking unit-prefix v0.5.1
[INFO] [stderr]     Checking unindent v0.2.4
[INFO] [stderr]    Compiling indoc v2.0.6
[INFO] [stderr]     Checking natord v1.0.9
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[INFO] [stderr]     Checking lexical-write-integer v1.0.6
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[INFO] [stderr]     Checking lexical-parse-float v1.0.6
[INFO] [stderr]     Checking lexical-write-float v1.0.6
[INFO] [stderr]     Checking indexmap v2.11.4
[INFO] [stderr]     Checking bstr v1.12.0
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]     Checking libz-rs-sys v0.5.2
[INFO] [stderr]    Compiling pyo3-build-config v0.25.1
[INFO] [stderr]    Compiling syn v2.0.106
[INFO] [stderr]     Checking flate2 v1.1.2
[INFO] [stderr]     Checking lexical-core v1.0.6
[INFO] [stderr]     Checking noodles-core v0.17.0
[INFO] [stderr]    Compiling pyo3-macros-backend v0.25.1
[INFO] [stderr]    Compiling pyo3-ffi v0.25.1
[INFO] [stderr]    Compiling pyo3 v0.25.1
[INFO] [stderr]    Compiling libdeflate-sys v1.24.0
[INFO] [stderr]     Checking parking_lot_core v0.9.11
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[INFO] [stderr]     Checking ctrlc v3.5.0
[INFO] [stderr]     Checking indicatif v0.18.0
[INFO] [stderr]     Checking libdeflater v1.24.0
[INFO] [stderr]     Checking noodles-bgzf v0.41.0
[INFO] [stderr]     Checking noodles-csi v0.49.0
[INFO] [stderr]     Checking noodles-sam v0.77.0
[INFO] [stderr]    Compiling pyo3-macros v0.25.1
[INFO] [stderr]     Checking noodles-bam v0.81.0
[INFO] [stderr]     Checking noodles v0.99.0
[INFO] [stderr]  Documenting cnv_from_bam v0.4.5 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 18.72s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/cnv_from_bam/index.html
[INFO] running `Command { std: "docker" "inspect" "0fc4ad91124d2d2c96d733d0fdea7a3df382629030a7ce86fa3ceb1eff084796", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "0fc4ad91124d2d2c96d733d0fdea7a3df382629030a7ce86fa3ceb1eff084796", kill_on_drop: false }`
[INFO] [stdout] 0fc4ad91124d2d2c96d733d0fdea7a3df382629030a7ce86fa3ceb1eff084796
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "DOCS_RS=1" "-e" "RUSTC_BOOTSTRAP=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "rustdoc" "--lib" "-Zrustdoc-map" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4adc5dca539f3e5c2c2e63f1a0240288a65bf0c4c44a89981fa91f6a676300c9
[INFO] running `Command { std: "docker" "start" "-a" "4adc5dca539f3e5c2c2e63f1a0240288a65bf0c4c44a89981fa91f6a676300c9", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.101
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]    Compiling syn v2.0.106
[INFO] [stderr]    Compiling pyo3-macros-backend v0.25.1
[INFO] [stderr]    Compiling pyo3-macros v0.25.1
[INFO] [stderr]     Checking pyo3 v0.25.1
[INFO] [stderr]  Documenting cnv_from_bam v0.4.5 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 12.51s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/cnv_from_bam/index.html
[INFO] running `Command { std: "docker" "inspect" "4adc5dca539f3e5c2c2e63f1a0240288a65bf0c4c44a89981fa91f6a676300c9", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4adc5dca539f3e5c2c2e63f1a0240288a65bf0c4c44a89981fa91f6a676300c9", kill_on_drop: false }`
[INFO] [stdout] 4adc5dca539f3e5c2c2e63f1a0240288a65bf0c4c44a89981fa91f6a676300c9
