[INFO] cloning repository https://github.com/ARU-life-sciences/onsm
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ARU-life-sciences/onsm" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fonsm", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fonsm'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 9db0d8b37e9e78aa297f576bd68a88000ecf63bb
[INFO] documenting ARU-life-sciences/onsm against beta-2025-09-21 for beta-rustdoc-1.91-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fonsm" "/workspace/builds/worker-3-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-3-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/ARU-life-sciences/onsm
[INFO] finished tweaking git repo https://github.com/ARU-life-sciences/onsm
[INFO] tweaked toml for git repo https://github.com/ARU-life-sciences/onsm written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ARU-life-sciences/onsm on toolchain beta-2025-09-21
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ARU-life-sciences/onsm already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 417bdb1a8427f288c5f586b879b0f2eca87222718f80ffd35205a5b6d4a877f3
[INFO] running `Command { std: "docker" "start" "-a" "417bdb1a8427f288c5f586b879b0f2eca87222718f80ffd35205a5b6d4a877f3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "417bdb1a8427f288c5f586b879b0f2eca87222718f80ffd35205a5b6d4a877f3", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "417bdb1a8427f288c5f586b879b0f2eca87222718f80ffd35205a5b6d4a877f3", kill_on_drop: false }`
[INFO] [stdout] 417bdb1a8427f288c5f586b879b0f2eca87222718f80ffd35205a5b6d4a877f3
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 9204c3f229cbe2cc1dd13c344d516b1ecdca4e5c149eb35f0db9d1bae201c7d5
[INFO] running `Command { std: "docker" "start" "-a" "9204c3f229cbe2cc1dd13c344d516b1ecdca4e5c149eb35f0db9d1bae201c7d5", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.175
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling find-msvc-tools v0.1.2
[INFO] [stderr]    Compiling pkg-config v0.3.32
[INFO] [stderr]    Compiling proc-macro2 v1.0.101
[INFO] [stderr]    Compiling unicode-ident v1.0.19
[INFO] [stderr]     Checking memchr v2.7.5
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
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[INFO] [stderr]     Checking anstyle v1.0.11
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[INFO] [stderr]    Compiling serde_json v1.0.145
[INFO] [stderr]    Compiling serde v1.0.223
[INFO] [stderr]     Checking linux-raw-sys v0.4.15
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[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling cc v1.2.38
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]    Compiling syn v2.0.106
[INFO] [stderr]     Checking rayon v1.11.0
[INFO] [stderr]     Checking regex-automata v0.4.10
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling liblzma-sys v0.3.13
[INFO] [stderr]     Checking tempfile v3.22.0
[INFO] [stderr]     Checking which v6.0.3
[INFO] [stderr]     Checking bzip2 v0.4.4
[INFO] [stderr]     Checking regex v1.11.2
[INFO] [stderr]     Checking env_filter v0.1.3
[INFO] [stderr]     Checking liblzma v0.3.6
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling serde_derive v1.0.223
[INFO] [stderr]    Compiling clap_derive v4.5.47
[INFO] [stderr]     Checking env_logger v0.11.8
[INFO] [stderr]     Checking clap v4.5.47
[INFO] [stderr]     Checking zstd v0.13.3
[INFO] [stderr]     Checking needletail v0.6.3
[INFO] [stderr]  Documenting onsm v0.1.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unresolved link to `0,1`
[INFO] [stdout]   --> src/model.rs:45:81
[INFO] [stdout]    |
[INFO] [stdout] 45 | /// `per_pair[pid] = (frac_spanning_nuc_window, frac_spanning_mito_window)` in [0,1].
[INFO] [stdout]    |                                                                                 ^^^ no item named `0,1` in scope
[INFO] [stdout]    |
[INFO] [stdout]    = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout]    = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unclosed HTML tag `timestamp`
[INFO] [stdout]   --> src/subcommands/reuse.rs:18:58
[INFO] [stdout]    |
[INFO] [stdout] 18 |     /// Where to write re-scored outputs (default: reuse_<timestamp> inside --from)
[INFO] [stdout]    |                                                          ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(rustdoc::invalid_html_tags)]` on by default
[INFO] [stdout] help: try marking as source code
[INFO] [stdout]    |
[INFO] [stdout] 18 |     /// Where to write re-scored outputs (default: `reuse_<timestamp>` inside --from)
[INFO] [stdout]    |                                                    +                 +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 25.79s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/onsm/index.html
[INFO] running `Command { std: "docker" "inspect" "9204c3f229cbe2cc1dd13c344d516b1ecdca4e5c149eb35f0db9d1bae201c7d5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "9204c3f229cbe2cc1dd13c344d516b1ecdca4e5c149eb35f0db9d1bae201c7d5", kill_on_drop: false }`
[INFO] [stdout] 9204c3f229cbe2cc1dd13c344d516b1ecdca4e5c149eb35f0db9d1bae201c7d5
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "RUSTC_BOOTSTRAP=1" "-e" "DOCS_RS=1" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "rustdoc" "--lib" "-Zrustdoc-map" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 369670e27c34cd7156f49843eed0e9d13e4331acbc64fb4ed0d437937704ba21
[INFO] running `Command { std: "docker" "start" "-a" "369670e27c34cd7156f49843eed0e9d13e4331acbc64fb4ed0d437937704ba21", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.101
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling anyhow v1.0.99
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]    Compiling syn v2.0.106
[INFO] [stderr]    Compiling clap_derive v4.5.47
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling serde_derive v1.0.223
[INFO] [stderr]     Checking clap v4.5.47
[INFO] [stderr]     Checking serde v1.0.223
[INFO] [stderr]  Documenting onsm v0.1.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unresolved link to `0,1`
[INFO] [stdout]   --> src/model.rs:45:81
[INFO] [stdout]    |
[INFO] [stdout] 45 | /// `per_pair[pid] = (frac_spanning_nuc_window, frac_spanning_mito_window)` in [0,1].
[INFO] [stdout]    |                                                                                 ^^^ no item named `0,1` in scope
[INFO] [stdout]    |
[INFO] [stdout]    = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout]    = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unclosed HTML tag `timestamp`
[INFO] [stdout]   --> src/subcommands/reuse.rs:18:58
[INFO] [stdout]    |
[INFO] [stdout] 18 |     /// Where to write re-scored outputs (default: reuse_<timestamp> inside --from)
[INFO] [stdout]    |                                                          ^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(rustdoc::invalid_html_tags)]` on by default
[INFO] [stdout] help: try marking as source code
[INFO] [stdout]    |
[INFO] [stdout] 18 |     /// Where to write re-scored outputs (default: `reuse_<timestamp>` inside --from)
[INFO] [stdout]    |                                                    +                 +
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 9.50s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/onsm/index.html
[INFO] running `Command { std: "docker" "inspect" "369670e27c34cd7156f49843eed0e9d13e4331acbc64fb4ed0d437937704ba21", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "369670e27c34cd7156f49843eed0e9d13e4331acbc64fb4ed0d437937704ba21", kill_on_drop: false }`
[INFO] [stdout] 369670e27c34cd7156f49843eed0e9d13e4331acbc64fb4ed0d437937704ba21
