[INFO] cloning repository https://github.com/ARU-life-sciences/extract_nhmmer_tblout
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/ARU-life-sciences/extract_nhmmer_tblout" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fextract_nhmmer_tblout", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fextract_nhmmer_tblout'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] b463b611c347c1f23d68f2061296df531711728f
[INFO] documenting ARU-life-sciences/extract_nhmmer_tblout against beta-2025-09-21 for beta-rustdoc-1.91-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FARU-life-sciences%2Fextract_nhmmer_tblout" "/workspace/builds/worker-2-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-2-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout
[INFO] finished tweaking git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout
[INFO] tweaked toml for git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout on toolchain beta-2025-09-21
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/ARU-life-sciences/extract_nhmmer_tblout already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] 8aacd711addcdb66db12b079e5dfa87a4955271d2c8d470d41cee18b12b22a7f
[INFO] running `Command { std: "docker" "start" "-a" "8aacd711addcdb66db12b079e5dfa87a4955271d2c8d470d41cee18b12b22a7f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "8aacd711addcdb66db12b079e5dfa87a4955271d2c8d470d41cee18b12b22a7f", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "8aacd711addcdb66db12b079e5dfa87a4955271d2c8d470d41cee18b12b22a7f", kill_on_drop: false }`
[INFO] [stdout] 8aacd711addcdb66db12b079e5dfa87a4955271d2c8d470d41cee18b12b22a7f
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 2ff3fb66bd13b6ea9cb2a75b2440095c1cf101d166dea1e9acffb3cc3cf3e3e8
[INFO] running `Command { std: "docker" "start" "-a" "2ff3fb66bd13b6ea9cb2a75b2440095c1cf101d166dea1e9acffb3cc3cf3e3e8", kill_on_drop: false }`
[INFO] [stderr]    Compiling crc32fast v1.4.0
[INFO] [stderr]    Compiling crossbeam-utils v0.8.19
[INFO] [stderr]     Checking adler2 v2.0.1
[INFO] [stderr]     Checking is_terminal_polyfill v1.70.0
[INFO] [stderr]     Checking anstyle-query v1.0.3
[INFO] [stderr]    Compiling rustix v0.38.34
[INFO] [stderr]     Checking colorchoice v1.0.1
[INFO] [stderr]     Checking anstyle v1.0.7
[INFO] [stderr]     Checking memchr v2.7.2
[INFO] [stderr]     Checking bitflags v2.5.0
[INFO] [stderr]     Checking strsim v0.11.1
[INFO] [stderr]     Checking byteorder v1.5.0
[INFO] [stderr]    Compiling anyhow v1.0.82
[INFO] [stderr]     Checking bytes v1.6.0
[INFO] [stderr]     Checking anstyle-parse v0.2.4
[INFO] [stderr]     Checking linux-raw-sys v0.4.13
[INFO] [stderr]     Checking fastrand v2.1.0
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]     Checking hmm_tblout v0.2.1
[INFO] [stderr]     Checking anstream v0.6.14
[INFO] [stderr]     Checking bstr v1.9.1
[INFO] [stderr]     Checking flate2 v1.1.2
[INFO] [stderr]     Checking clap_builder v4.5.2
[INFO] [stderr]     Checking crossbeam-channel v0.5.12
[INFO] [stderr]     Checking noodles-bgzf v0.29.0
[INFO] [stderr]     Checking noodles-core v0.15.0
[INFO] [stderr]     Checking noodles-fasta v0.37.0
[INFO] [stderr]     Checking tempfile v3.10.1
[INFO] [stderr]     Checking clap v4.5.4
[INFO] [stderr]  Documenting extract_nhmmer_tblout v0.1.31 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 6.79s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/extract_nhmmer_tblout/index.html
[INFO] running `Command { std: "docker" "inspect" "2ff3fb66bd13b6ea9cb2a75b2440095c1cf101d166dea1e9acffb3cc3cf3e3e8", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "2ff3fb66bd13b6ea9cb2a75b2440095c1cf101d166dea1e9acffb3cc3cf3e3e8", kill_on_drop: false }`
[INFO] [stdout] 2ff3fb66bd13b6ea9cb2a75b2440095c1cf101d166dea1e9acffb3cc3cf3e3e8
