[INFO] cloning repository https://github.com/10XGenomics/bamtofastq
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/10XGenomics/bamtofastq" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] f7d9adc1604a6205710963f4f53bbbde4e24624f
[INFO] documenting 10XGenomics/bamtofastq against beta-2025-09-21 for beta-rustdoc-1.91-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2F10XGenomics%2Fbamtofastq" "/workspace/builds/worker-4-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-4-tc2/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-4-tc2/source/.cargo/config.toml
[INFO] started tweaking git repo https://github.com/10XGenomics/bamtofastq
[INFO] finished tweaking git repo https://github.com/10XGenomics/bamtofastq
[INFO] tweaked toml for git repo https://github.com/10XGenomics/bamtofastq written to /workspace/builds/worker-4-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/10XGenomics/bamtofastq on toolchain beta-2025-09-21
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/10XGenomics/bamtofastq already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+beta-2025-09-21" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] [stdout] ace25c2e6bf5f7b52f00cbb88a954dce37e878f8e3b2020294d0f0e467f6ea9e
[INFO] running `Command { std: "docker" "start" "-a" "ace25c2e6bf5f7b52f00cbb88a954dce37e878f8e3b2020294d0f0e467f6ea9e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ace25c2e6bf5f7b52f00cbb88a954dce37e878f8e3b2020294d0f0e467f6ea9e", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ace25c2e6bf5f7b52f00cbb88a954dce37e878f8e3b2020294d0f0e467f6ea9e", kill_on_drop: false }`
[INFO] [stdout] ace25c2e6bf5f7b52f00cbb88a954dce37e878f8e3b2020294d0f0e467f6ea9e
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-w" "/opt/rustwide/workdir" "-m" "1610612736" "--user" "0:0" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:e90291280db7d1fac5b66fc6dad9f9662629e7365a55743daf9bdf73ebc4ea79" "/opt/rustwide/cargo-home/bin/cargo" "+beta-2025-09-21" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stdout] 4020627a2301bee88915b7c9504d1691d3fda1c41355a81aea02535031189977
[INFO] running `Command { std: "docker" "start" "-a" "4020627a2301bee88915b7c9504d1691d3fda1c41355a81aea02535031189977", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.149
[INFO] [stderr]    Compiling proc-macro2 v1.0.52
[INFO] [stderr]    Compiling unicode-ident v1.0.8
[INFO] [stderr]    Compiling quote v1.0.26
[INFO] [stderr]    Compiling pkg-config v0.3.26
[INFO] [stderr]     Checking memchr v2.6.4
[INFO] [stderr]     Checking cfg-if v1.0.0
[INFO] [stderr]    Compiling serde_derive v1.0.156
[INFO] [stderr]    Compiling serde v1.0.156
[INFO] [stderr]    Compiling rustversion v1.0.12
[INFO] [stderr]     Checking regex-syntax v0.8.0
[INFO] [stderr]     Checking tinyvec_macros v0.1.1
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking gimli v0.27.2
[INFO] [stderr]    Compiling crossbeam-utils v0.8.15
[INFO] [stderr]     Checking tinyvec v1.6.0
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling thiserror v1.0.39
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[INFO] [stderr]    Compiling rustix v0.38.21
[INFO] [stderr]    Compiling rustc_version v0.1.7
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[INFO] [stderr]    Compiling anyhow v1.0.72
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[INFO] [stderr]     Checking form_urlencoded v1.1.0
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[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]     Checking byteorder v1.4.3
[INFO] [stderr]     Checking bitflags v2.4.1
[INFO] [stderr]     Checking linux-raw-sys v0.4.10
[INFO] [stderr]     Checking unicode-normalization v0.1.22
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[INFO] [stderr]     Checking object v0.31.1
[INFO] [stderr]     Checking csv-core v0.1.10
[INFO] [stderr]     Checking either v1.8.1
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[INFO] [stderr]     Checking itoa v1.0.6
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[INFO] [stderr]     Checking itertools v0.12.0
[INFO] [stderr]    Compiling syn v1.0.109
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[INFO] [stderr]    Compiling cc v1.0.79
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[INFO] [stderr]    Compiling cmake v0.1.49
[INFO] [stderr]    Compiling bzip2-sys v0.1.11+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling libdeflate-sys v0.7.5
[INFO] [stderr]    Compiling lz4-sys v1.9.4
[INFO] [stderr]    Compiling backtrace v0.3.68
[INFO] [stderr]    Compiling hts-sys v2.1.1
[INFO] [stderr]    Compiling libz-sys v1.1.12
[INFO] [stderr]     Checking regex-automata v0.4.1
[INFO] [stderr]     Checking addr2line v0.20.0
[INFO] [stderr]     Checking tempfile v3.8.1
[INFO] [stderr]    Compiling thiserror-impl v1.0.39
[INFO] [stderr]    Compiling strum_macros v0.24.3
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]     Checking flate2 v1.0.28
[INFO] [stderr]     Checking regex v1.10.0
[INFO] [stderr]     Checking bio-types v0.13.0
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[INFO] [stderr]     Checking serde_bytes v0.11.10
[INFO] [stderr]     Checking csv v1.2.2
[INFO] [stderr]     Checking docopt v1.1.1
[INFO] [stderr]     Checking lz4 v1.24.0
[INFO] [stderr]     Checking shardio v0.8.2
[INFO] [stderr]     Checking rust-htslib v0.44.1
[INFO] [stderr]  Documenting bamtofastq v1.4.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `dev` profile [optimized + debuginfo] target(s) in 1m 19s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/bamtofastq/index.html
[INFO] running `Command { std: "docker" "inspect" "4020627a2301bee88915b7c9504d1691d3fda1c41355a81aea02535031189977", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4020627a2301bee88915b7c9504d1691d3fda1c41355a81aea02535031189977", kill_on_drop: false }`
[INFO] [stdout] 4020627a2301bee88915b7c9504d1691d3fda1c41355a81aea02535031189977
