[INFO] fetching crate deepbiop-cli 0.1.17...
[INFO] documenting deepbiop-cli-0.1.17 against 1.99.0-beta.8 for beta-rustdoc-1.100
[INFO] extracting crate deepbiop-cli 0.1.17 into /workspace/builds/worker-3-tc1/source
[INFO] started tweaking crates.io crate deepbiop-cli 0.1.17
[INFO] finished tweaking crates.io crate deepbiop-cli 0.1.17
[INFO] tweaked toml for crates.io crate deepbiop-cli 0.1.17 written to /workspace/builds/worker-3-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate deepbiop-cli 0.1.17 on toolchain 1.99.0-beta.8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate deepbiop-cli 0.1.17 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-csi v0.61.0
[INFO] [stderr]   Downloaded noodles-fastq v0.23.0
[INFO] [stderr]   Downloaded noodles-vcf v0.93.0
[INFO] [stderr]   Downloaded noodles-fasta v0.66.0
[INFO] [stderr]   Downloaded pest_generator v2.9.1
[INFO] [stderr]   Downloaded human-panic v2.0.8
[INFO] [stderr]   Downloaded noodles v0.116.0
[INFO] [stderr]   Downloaded py_literal v0.4.0
[INFO] [stderr]   Downloaded buffer-redux v1.1.0
[INFO] [stderr]   Downloaded noodles-tabix v0.67.0
[INFO] [stderr]   Downloaded pest_derive v2.9.1
[INFO] [stderr]   Downloaded liblzma v0.3.6
[INFO] [stderr]   Downloaded pest_meta v2.9.1
[INFO] [stderr]   Downloaded noodles-gff v0.62.0
[INFO] [stderr]   Downloaded libbz2-rs-sys v0.2.5
[INFO] [stderr]   Downloaded ndarray-npy v0.10.0
[INFO] [stderr]   Downloaded noodles-bam v0.95.0
[INFO] [stderr]   Downloaded noodles-sam v0.90.0
[INFO] [stderr]   Downloaded pest v2.9.1
[INFO] [stderr]   Downloaded deepbiop-utils v0.1.17
[INFO] [stderr]   Downloaded needletail v0.7.3
[INFO] [stderr]   Downloaded liblzma-sys v0.3.13
[INFO] [stderr]   Downloaded parquet v60.0.0
[INFO] [stderr]   Downloaded brotli v9.0.0
[INFO] [stderr]   Downloaded alloc-no-stdlib v3.0.0
[INFO] [stderr]   Downloaded alloc-stdlib v0.3.0
[INFO] [stderr]   Downloaded arrow-cmp v60.0.0
[INFO] [stderr]   Downloaded deepbiop-core v0.1.17
[INFO] [stderr]   Downloaded arrow-data v60.0.0
[INFO] [stderr]   Downloaded arrow-schema v60.0.0
[INFO] [stderr]   Downloaded arrow-buffer v60.0.0
[INFO] [stderr]   Downloaded arrow-ipc v60.0.0
[INFO] [stderr]   Downloaded arrow-arith v60.0.0
[INFO] [stderr]   Downloaded arrow-select v60.0.0
[INFO] [stderr]   Downloaded clap-markdown v0.1.5
[INFO] [stderr]   Downloaded atoi v3.1.0
[INFO] [stderr]   Downloaded deepbiop-fa v0.1.17
[INFO] [stderr]   Downloaded clap_complete v4.6.11
[INFO] [stderr]   Downloaded lz4_flex v0.14.0
[INFO] [stderr]   Downloaded arrow-string v60.0.0
[INFO] [stderr]   Downloaded arrow-row v60.0.0
[INFO] [stderr]   Downloaded brotli-decompressor v6.0.0
[INFO] [stderr]   Downloaded arrow-ord v60.0.0
[INFO] [stderr]   Downloaded bon v3.10.1
[INFO] [stderr]   Downloaded arrow v60.0.0
[INFO] [stderr]   Downloaded arrow-array v60.0.0
[INFO] [stderr]   Downloaded bon-macros v3.10.1
[INFO] [stderr]   Downloaded arrow-json v60.0.0
[INFO] [stderr]   Downloaded arrow-cast v60.0.0
[INFO] [stderr]   Downloaded arrow-csv v60.0.0
[INFO] [stderr]   Downloaded deepbiop-fq v0.1.17
[INFO] [stderr]   Downloaded deepbiop-bam v0.1.17
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] bc8f1bd401c1ccc38b1a2f3db1b2fa39d647fca6aa323c1a9363d1e309ed26c2
[INFO] running `Command { std: "docker" "start" "bc8f1bd401c1ccc38b1a2f3db1b2fa39d647fca6aa323c1a9363d1e309ed26c2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "bc8f1bd401c1ccc38b1a2f3db1b2fa39d647fca6aa323c1a9363d1e309ed26c2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "bc8f1bd401c1ccc38b1a2f3db1b2fa39d647fca6aa323c1a9363d1e309ed26c2" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "bc8f1bd401c1ccc38b1a2f3db1b2fa39d647fca6aa323c1a9363d1e309ed26c2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "bc8f1bd401c1ccc38b1a2f3db1b2fa39d647fca6aa323c1a9363d1e309ed26c2" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.107
[INFO] [stderr]    Compiling zerocopy v0.8.57
[INFO] [stderr]    Compiling crossbeam-utils v0.8.23
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.21
[INFO] [stderr]    Compiling crossbeam-deque v0.8.8
[INFO] [stderr]     Checking either v1.18.0
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[INFO] [stderr]    Compiling find-msvc-tools v0.1.13
[INFO] [stderr]     Checking getrandom v0.3.4
[INFO] [stderr]     Checking aho-corasick v1.1.5
[INFO] [stderr]    Compiling jobserver v0.1.35
[INFO] [stderr]     Checking num-integer v0.1.47
[INFO] [stderr]     Checking lexical-util v1.0.7
[INFO] [stderr]     Checking zlib-rs v0.6.8
[INFO] [stderr]     Checking arrow-schema v60.0.0
[INFO] [stderr]     Checking chrono v0.4.45
[INFO] [stderr]     Checking indexmap v2.14.2
[INFO] [stderr]    Compiling crc32fast v1.5.2
[INFO] [stderr]     Checking rand_core v0.9.5
[INFO] [stderr]     Checking raw-cpuid v11.6.0
[INFO] [stderr]     Checking log v0.4.34
[INFO] [stderr]     Checking getrandom v0.4.3
[INFO] [stderr]     Checking simd-adler32 v0.3.10
[INFO] [stderr]    Compiling cc v1.4.7
[INFO] [stderr]     Checking num-bigint v0.5.1
[INFO] [stderr]    Compiling serde_json v1.0.151
[INFO] [stderr]     Checking bit-vec v0.10.1
[INFO] [stderr]     Checking writeable v0.6.4
[INFO] [stderr]    Compiling flatbuffers v25.12.19
[INFO] [stderr]     Checking miniz_oxide v0.9.1
[INFO] [stderr]     Checking smallvec v1.16.1
[INFO] [stderr]     Checking lexical-parse-integer v1.0.6
[INFO] [stderr]     Checking lexical-write-integer v1.0.6
[INFO] [stderr]    Compiling rustix v1.1.5
[INFO] [stderr]     Checking lexical-parse-float v1.0.6
[INFO] [stderr]    Compiling quote v1.0.47
[INFO] [stderr]     Checking crossbeam-channel v0.5.17
[INFO] [stderr]     Checking lexical-write-float v1.0.6
[INFO] [stderr]    Compiling pest v2.9.1
[INFO] [stderr]     Checking atoi v3.1.0
[INFO] [stderr]    Compiling zstd-safe v8.0.0
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[INFO] [stderr]     Checking regex-automata v0.4.18
[INFO] [stderr]    Compiling icu_locale_fallback_data v2.3.0
[INFO] [stderr]     Checking alloc-no-stdlib v3.0.0
[INFO] [stderr]    Compiling syn v3.0.6
[INFO] [stderr]    Compiling syn v2.0.119
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[INFO] [stderr]    Compiling zstd-safe v7.3.0
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[INFO] [stderr]    Compiling zstd-sys v2.1.0+zstd.1.5.7
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[INFO] [stderr]    Compiling liblzma-sys v0.3.13
[INFO] [stderr]     Checking itertools v0.15.0
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[INFO] [stderr]     Checking liblzma v0.3.6
[INFO] [stderr]     Checking brotli v9.0.0
[INFO] [stderr]     Checking clap_lex v1.1.1
[INFO] [stderr]     Checking smawk v0.3.3
[INFO] [stderr]     Checking tempfile v3.27.0
[INFO] [stderr]    Compiling object v0.37.3
[INFO] [stderr]     Checking bstr v1.13.1
[INFO] [stderr]     Checking regex v1.13.1
[INFO] [stderr]     Checking clap_builder v4.6.7
[INFO] [stderr]     Checking colored v3.1.1
[INFO] [stderr]    Compiling cfg_aliases v0.2.2
[INFO] [stderr]    Compiling prettyplease v0.3.0
[INFO] [stderr]    Compiling nix v0.31.3
[INFO] [stderr]     Checking gimli v0.32.3
[INFO] [stderr]     Checking rand_distr v0.6.0
[INFO] [stderr]     Checking miniz_oxide v0.8.9
[INFO] [stderr]     Checking serde_spanned v1.1.1
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[INFO] [stderr]     Checking rayon-cond v0.4.0
[INFO] [stderr]     Checking toml_writer v1.1.2+spec-1.1.0
[INFO] [stderr]     Checking rustc-demangle v0.1.28
[INFO] [stderr]     Checking jiff-core v0.1.1
[INFO] [stderr]     Checking toml v1.1.6+spec-1.1.0
[INFO] [stderr]     Checking noodles-core v0.20.0
[INFO] [stderr]     Checking noodles-fastq v0.23.0
[INFO] [stderr]     Checking env_filter v2.0.0
[INFO] [stderr]     Checking noodles-csi v0.61.0
[INFO] [stderr]     Checking noodles-fasta v0.66.0
[INFO] [stderr]     Checking uuid v1.26.1
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[INFO] [stderr]     Checking noodles-sam v0.90.0
[INFO] [stderr]     Checking noodles-tabix v0.67.0
[INFO] [stderr]     Checking noodles-gff v0.62.0
[INFO] [stderr]     Checking noodles-vcf v0.93.0
[INFO] [stderr]     Checking ctrlc v3.5.2
[INFO] [stderr]     Checking jiff v0.2.37
[INFO] [stderr]    Compiling darling_core v0.20.11
[INFO] [stderr]    Compiling pest_generator v2.9.1
[INFO] [stderr]     Checking noodles-bam v0.95.0
[INFO] [stderr]     Checking addr2line v0.25.1
[INFO] [stderr] error: could not compile `object` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/1.99.0-beta.8-x86_64-unknown-linux-gnu/bin/rustc --crate-name object --edition=2018 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/object-0.37.3/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="archive"' --cfg 'feature="coff"' --cfg 'feature="elf"' --cfg 'feature="macho"' --cfg 'feature="pe"' --cfg 'feature="read_core"' --cfg 'feature="unaligned"' --cfg 'feature="xcoff"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("all", "alloc", "archive", "build", "build_core", "cargo-all", "coff", "compression", "core", "default", "doc", "elf", "macho", "pe", "read", "read_core", "rustc-dep-of-std", "std", "unaligned", "unstable", "unstable-all", "wasm", "write", "write_core", "write_std", "xcoff"))' -C metadata=35967b54e5422781 -C extra-filename=-fa1c58089e0a9bfe --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern memchr=/opt/rustwide/target/debug/deps/libmemchr-e185715bbb5934f1.rmeta --cap-lints allow --cap-lints=warn --cfg core_error --check-cfg 'cfg(core_error)'` (signal: 9, SIGKILL: kill)
[INFO] [stderr] warning: build failed, waiting for other jobs to finish...
[INFO] [stderr] error: could not compile `syn` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/1.99.0-beta.8-x86_64-unknown-linux-gnu/bin/rustc --crate-name syn --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/syn-3.0.6/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --cfg 'feature="clone-impls"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="extra-traits"' --cfg 'feature="fold"' --cfg 'feature="full"' --cfg 'feature="parsing"' --cfg 'feature="printing"' --cfg 'feature="proc-macro"' --cfg 'feature="visit"' --cfg 'feature="visit-mut"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clone-impls", "default", "derive", "extra-traits", "fold", "full", "parsing", "printing", "proc-macro", "test", "visit", "visit-mut"))' -C metadata=3f69b356b7a36f08 -C extra-filename=-6cd91ae8e062f563 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern proc_macro2=/opt/rustwide/target/debug/deps/libproc_macro2-9777a2717d7b7d19.rmeta --extern quote=/opt/rustwide/target/debug/deps/libquote-12eb74adb1fe7137.rmeta --extern unicode_ident=/opt/rustwide/target/debug/deps/libunicode_ident-7d090ccf0d71aea6.rmeta --cap-lints allow --cap-lints=warn` (signal: 9, SIGKILL: kill)
[INFO] [stderr] error: could not compile `syn` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/1.99.0-beta.8-x86_64-unknown-linux-gnu/bin/rustc --crate-name syn --edition=2021 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/syn-2.0.119/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata,link -C embed-bitcode=no --cfg 'feature="clone-impls"' --cfg 'feature="default"' --cfg 'feature="derive"' --cfg 'feature="extra-traits"' --cfg 'feature="full"' --cfg 'feature="parsing"' --cfg 'feature="printing"' --cfg 'feature="proc-macro"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("clone-impls", "default", "derive", "extra-traits", "fold", "full", "parsing", "printing", "proc-macro", "test", "visit", "visit-mut"))' -C metadata=a57e5e9361a1b033 -C extra-filename=-981af6f526b6206f --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern proc_macro2=/opt/rustwide/target/debug/deps/libproc_macro2-9777a2717d7b7d19.rmeta --extern quote=/opt/rustwide/target/debug/deps/libquote-12eb74adb1fe7137.rmeta --extern unicode_ident=/opt/rustwide/target/debug/deps/libunicode_ident-7d090ccf0d71aea6.rmeta --cap-lints allow --cap-lints=warn` (signal: 9, SIGKILL: kill)
[INFO] [stderr] error: could not compile `brotli` (lib)
[INFO] [stderr] 
[INFO] [stderr] Caused by:
[INFO] [stderr]   process didn't exit successfully: `/opt/rustwide/rustup-home/toolchains/1.99.0-beta.8-x86_64-unknown-linux-gnu/bin/rustc --crate-name brotli --edition=2015 /opt/rustwide/cargo-home/registry/src/index.crates.io-1949cf8c6b5b557f/brotli-9.0.0/src/lib.rs --error-format=json --json=diagnostic-rendered-ansi,artifacts,future-incompat --crate-type lib --emit=dep-info,metadata -C embed-bitcode=no -C debuginfo=2 --cfg 'feature="alloc-stdlib"' --cfg 'feature="std"' --check-cfg 'cfg(docsrs,test)' --check-cfg 'cfg(feature, values("alloc-stdlib", "benchmark", "billing", "default", "disable-timer", "disallow_large_window_size", "external-literal-probability", "ffi-api", "float64", "floating_point_context_mixing", "no-stdlib-ffi-binding", "pass-through-ffi-panics", "portable-float", "safe", "seccomp", "sha2", "simd", "std", "validation", "vector_scratch_space"))' -C metadata=4d05dc0cccf2fa25 -C extra-filename=-5ccea03d5004fa31 --out-dir /opt/rustwide/target/debug/deps -L dependency=/opt/rustwide/target/debug/deps --extern alloc_no_stdlib=/opt/rustwide/target/debug/deps/liballoc_no_stdlib-1897b1abc7c8f948.rmeta --extern alloc_stdlib=/opt/rustwide/target/debug/deps/liballoc_stdlib-7718a6e7ac4b4dab.rmeta --extern brotli_decompressor=/opt/rustwide/target/debug/deps/libbrotli_decompressor-090cefffb6946ff2.rmeta --cap-lints allow --cap-lints=warn` (signal: 9, SIGKILL: kill)
[INFO] running `Command { std: "docker" "inspect" "bc8f1bd401c1ccc38b1a2f3db1b2fa39d647fca6aa323c1a9363d1e309ed26c2", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "bc8f1bd401c1ccc38b1a2f3db1b2fa39d647fca6aa323c1a9363d1e309ed26c2", kill_on_drop: false }`
[INFO] [stdout] bc8f1bd401c1ccc38b1a2f3db1b2fa39d647fca6aa323c1a9363d1e309ed26c2