[INFO] cloning repository https://github.com/biobenkj/tagbam
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/biobenkj/tagbam" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbiobenkj%2Ftagbam", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbiobenkj%2Ftagbam'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] cbb991b116618f75093ae4b5d36c3185e71278e2
[INFO] documenting biobenkj/tagbam against 1.99.0-beta.8 for beta-rustdoc-1.100
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fbiobenkj%2Ftagbam" "/workspace/builds/worker-0-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-0-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/biobenkj/tagbam
[INFO] finished tweaking git repo https://github.com/biobenkj/tagbam
[INFO] tweaked toml for git repo https://github.com/biobenkj/tagbam written to /workspace/builds/worker-0-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/biobenkj/tagbam on toolchain 1.99.0-beta.8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/biobenkj/tagbam already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded rustc_version v0.1.7
[INFO] [stderr]   Downloaded semver v0.1.20
[INFO] [stderr]   Downloaded newtype_derive v0.1.6
[INFO] [stderr]   Downloaded fs-utils v1.1.4
[INFO] [stderr]   Downloaded derive-new v0.6.0
[INFO] [stderr]   Downloaded derive-new v0.7.0
[INFO] [stderr]   Downloaded custom_derive v0.1.7
[INFO] [stderr]   Downloaded rust-htslib v0.49.0
[INFO] [stderr]   Downloaded ieee754 v0.2.6
[INFO] [stderr]   Downloaded assert_cmd v2.1.1
[INFO] [stderr]   Downloaded bio-types v1.0.4
[INFO] [stderr]   Downloaded cc v1.2.49
[INFO] [stderr]   Downloaded libz-sys v1.1.23
[INFO] [stderr]   Downloaded curl-sys v0.4.84+curl-8.17.0
[INFO] [stderr]   Downloaded hts-sys v2.2.0
[INFO] [stderr]   Downloaded openssl-src v300.5.4+3.5.4
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] d787604df60c9950c710279a762aebc0c294dd9454cc85ca52926e424a221332
[INFO] running `Command { std: "docker" "start" "d787604df60c9950c710279a762aebc0c294dd9454cc85ca52926e424a221332", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "d787604df60c9950c710279a762aebc0c294dd9454cc85ca52926e424a221332", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "d787604df60c9950c710279a762aebc0c294dd9454cc85ca52926e424a221332" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "d787604df60c9950c710279a762aebc0c294dd9454cc85ca52926e424a221332", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "d787604df60c9950c710279a762aebc0c294dd9454cc85ca52926e424a221332" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.178
[INFO] [stderr]    Compiling clang-sys v1.8.1
[INFO] [stderr]    Compiling regex-syntax v0.8.8
[INFO] [stderr]    Compiling nom v7.1.3
[INFO] [stderr]    Compiling bindgen v0.69.5
[INFO] [stderr]    Compiling either v1.15.0
[INFO] [stderr]    Compiling rustc-hash v1.1.0
[INFO] [stderr]    Compiling quick-error v1.2.3
[INFO] [stderr]    Compiling bitflags v2.10.0
[INFO] [stderr]    Compiling lazycell v1.3.0
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]     Checking icu_normalizer v2.1.1
[INFO] [stderr]    Compiling itertools v0.12.1
[INFO] [stderr]    Compiling fs-utils v1.1.4
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]     Checking aho-corasick v1.1.4
[INFO] [stderr]     Checking icu_properties v2.1.2
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]     Checking regex-automata v0.4.13
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling cc v1.2.49
[INFO] [stderr]     Checking idna_adapter v1.2.1
[INFO] [stderr]     Checking idna v1.1.0
[INFO] [stderr]     Checking clap_builder v4.5.53
[INFO] [stderr]    Compiling cexpr v0.6.0
[INFO] [stderr]     Checking url v2.5.7
[INFO] [stderr]    Compiling cmake v0.1.54
[INFO] [stderr]    Compiling openssl-src v300.5.4+3.5.4
[INFO] [stderr]    Compiling clap_derive v4.5.49
[INFO] [stderr]    Compiling derive-new v0.7.0
[INFO] [stderr]     Checking linear-map v1.2.0
[INFO] [stderr]     Checking regex v1.12.2
[INFO] [stderr]     Checking custom_derive v0.1.7
[INFO] [stderr]    Compiling libz-sys v1.1.23
[INFO] [stderr]    Compiling openssl-sys v0.9.111
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling curl-sys v0.4.84+curl-8.17.0
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]     Checking bio-types v1.0.4
[INFO] [stderr]     Checking ieee754 v0.2.6
[INFO] [stderr]     Checking clap v4.5.53
[INFO] [stderr]    Compiling hts-sys v2.2.0
[ERROR] error running command: no output for 300 seconds
[INFO] running `Command { std: "docker" "inspect" "d787604df60c9950c710279a762aebc0c294dd9454cc85ca52926e424a221332", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d787604df60c9950c710279a762aebc0c294dd9454cc85ca52926e424a221332", kill_on_drop: false }`
[INFO] [stdout] d787604df60c9950c710279a762aebc0c294dd9454cc85ca52926e424a221332