[INFO] fetching crate deepbiop-utils 0.1.17...
[INFO] documenting deepbiop-utils-0.1.17 against 1.100.0-beta.1 for beta-rustdoc-1.100
[INFO] extracting crate deepbiop-utils 0.1.17 into /workspace/builds/worker-3-tc2/source
[INFO] started tweaking crates.io crate deepbiop-utils 0.1.17
[INFO] finished tweaking crates.io crate deepbiop-utils 0.1.17
[INFO] tweaked toml for crates.io crate deepbiop-utils 0.1.17 written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate deepbiop-utils 0.1.17 on toolchain 1.100.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate deepbiop-utils 0.1.17 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]    --> Cargo.toml:99:12
[INFO] [stderr]     |
[INFO] [stderr]  99 | homepage = "https://github.com/cauliyang/DeepBioP"
[INFO] [stderr]     |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 104 | repository = "https://github.com/cauliyang/DeepBioP"
[INFO] [stderr]     |              ---------------------------------------
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `deepbiop-utils` (manifest) generated 1 warning
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] e84f8c19b1f2184b715afd90c7859f04a3a0d9fdb0936e6fc36e4246972e2179
[INFO] running `Command { std: "docker" "start" "e84f8c19b1f2184b715afd90c7859f04a3a0d9fdb0936e6fc36e4246972e2179", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e84f8c19b1f2184b715afd90c7859f04a3a0d9fdb0936e6fc36e4246972e2179", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "e84f8c19b1f2184b715afd90c7859f04a3a0d9fdb0936e6fc36e4246972e2179" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e84f8c19b1f2184b715afd90c7859f04a3a0d9fdb0936e6fc36e4246972e2179", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "e84f8c19b1f2184b715afd90c7859f04a3a0d9fdb0936e6fc36e4246972e2179" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]    --> Cargo.toml:99:12
[INFO] [stderr]     |
[INFO] [stderr]  99 | homepage = "https://github.com/cauliyang/DeepBioP"
[INFO] [stderr]     |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 104 | repository = "https://github.com/cauliyang/DeepBioP"
[INFO] [stderr]     |              ---------------------------------------
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `deepbiop-utils` (manifest) generated 1 warning
[INFO] [stderr]    Compiling proc-macro2 v1.0.107
[INFO] [stderr]    Compiling zerocopy v0.8.57
[INFO] [stderr]    Compiling serde_core v1.0.229
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[INFO] [stderr]     Checking itertools v0.15.0
[INFO] [stderr]     Checking smawk v0.3.3
[INFO] [stderr]     Checking rand v0.10.2
[INFO] [stderr]    Compiling zstd-sys v2.1.0+zstd.1.5.7
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[INFO] [stderr]    Compiling liblzma-sys v0.3.13
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[INFO] [stderr]    Compiling synstructure v0.14.0
[INFO] [stderr]     Checking noodles-core v0.20.0
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[INFO] [stderr]    Compiling darling_core v0.20.11
[INFO] [stderr]    Compiling pest_generator v2.9.1
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[INFO] [stderr]    Compiling bytemuck_derive v1.12.1
[INFO] [stderr]    Compiling serde_derive v1.0.229
[INFO] [stderr]    Compiling zerofrom-derive v0.1.8
[INFO] [stderr]    Compiling yoke-derive v0.8.3
[INFO] [stderr]    Compiling zerovec-derive v0.11.6
[INFO] [stderr]    Compiling displaydoc v0.2.7
[INFO] [stderr]    Compiling thiserror-impl v2.0.20
[INFO] [stderr]    Compiling zerocopy-derive v0.8.57
[INFO] [stderr]    Compiling monostate-impl v0.1.18
[INFO] [stderr]    Compiling pest_derive v2.9.1
[INFO] [stderr]     Checking zerofrom v0.1.8
[INFO] [stderr]     Checking noodles-gff v0.62.0
[INFO] [stderr]     Checking yoke v0.8.3
[INFO] [stderr]     Checking zerotrie v0.2.5
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[INFO] [stderr]     Checking bytemuck v1.25.2
[INFO] [stderr]     Checking noodles-bam v0.95.0
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking dyn-stack v0.13.2
[INFO] [stderr]    Compiling darling_macro v0.20.11
[INFO] [stderr]    Compiling darling v0.20.11
[INFO] [stderr]    Compiling derive_builder_core v0.20.2
[INFO] [stderr]     Checking onig v6.5.3
[INFO] [stderr]     Checking py_literal v0.4.0
[INFO] [stderr]     Checking serde v1.0.229
[INFO] [stderr]     Checking tinystr v0.8.4
[INFO] [stderr]     Checking potential_utf v0.1.6
[INFO] [stderr]     Checking icu_locale_core v2.3.0
[INFO] [stderr]     Checking icu_collections v2.3.0
[INFO] [stderr]     Checking noodles v0.116.0
[INFO] [stderr]     Checking compact_str v0.9.1
[INFO] [stderr]     Checking spm_precompiled v0.1.4
[INFO] [stderr]     Checking dary_heap v0.3.9
[INFO] [stderr]     Checking ndarray v0.17.2
[INFO] [stderr]     Checking safetensors v0.8.0
[INFO] [stderr]     Checking zstd v0.13.3
[INFO] [stderr]     Checking needletail v0.7.3
[INFO] [stderr]     Checking zstd v0.14.0
[INFO] [stderr]    Compiling derive_builder_macro v0.20.2
[INFO] [stderr]     Checking icu_provider v2.3.1
[INFO] [stderr]     Checking derive_builder v0.20.2
[INFO] [stderr]     Checking icu_locale_fallback v2.3.0
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[INFO] [stderr]     Checking rand_distr v0.5.1
[INFO] [stderr]     Checking tokenizers v0.22.2
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[INFO] [stderr]     Checking arrow-buffer v60.0.0
[INFO] [stderr]     Checking gemm-common v0.19.0
[INFO] [stderr]     Checking float8 v0.7.0
[INFO] [stderr]     Checking gemm-f32 v0.19.0
[INFO] [stderr]     Checking gemm-f64 v0.19.0
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[INFO] [stderr]     Checking arrow-data v60.0.0
[INFO] [stderr]     Checking gemm-f16 v0.19.0
[INFO] [stderr]     Checking gemm v0.19.0
[INFO] [stderr]     Checking arrow-array v60.0.0
[INFO] [stderr]     Checking candle-core v0.11.0
[INFO] [stderr]     Checking arrow-cmp v60.0.0
[INFO] [stderr]     Checking arrow-row v60.0.0
[INFO] [stderr]     Checking arrow-arith v60.0.0
[INFO] [stderr]     Checking arrow-select v60.0.0
[INFO] [stderr]     Checking arrow-ord v60.0.0
[INFO] [stderr]     Checking arrow-ipc v60.0.0
[INFO] [stderr]     Checking arrow-string v60.0.0
[INFO] [stderr]     Checking arrow-cast v60.0.0
[INFO] [stderr]     Checking parquet v60.0.0
[INFO] [stderr]     Checking arrow-json v60.0.0
[INFO] [stderr]     Checking arrow-csv v60.0.0
[INFO] [stderr]     Checking arrow v60.0.0
[INFO] [stderr]     Checking deepbiop-core v0.1.17
[INFO] [stderr]  Documenting deepbiop-utils v0.1.17 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unresolved link to `j`
[INFO] [stdout]   --> src/sampling.rs:20:79
[INFO] [stdout]    |
[INFO] [stdout] 20 | ///    by generating a random number j in [0, i]. If j < k, replace reservoir[j] with
[INFO] [stdout]    |                                                                               ^ no item named `j` in scope
[INFO] [stdout]    |
[INFO] [stdout]    = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout]    = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 52.21s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/deepbiop_utils/index.html
[INFO] running `Command { std: "docker" "inspect" "e84f8c19b1f2184b715afd90c7859f04a3a0d9fdb0936e6fc36e4246972e2179", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "DOCS_RS=1" "-e" "RUSTC_BOOTSTRAP=1" "-w" "/opt/rustwide/workdir" "--user" "0:0" "e84f8c19b1f2184b715afd90c7859f04a3a0d9fdb0936e6fc36e4246972e2179" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "rustdoc" "--lib" "-Zrustdoc-map" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]    --> Cargo.toml:99:12
[INFO] [stderr]     |
[INFO] [stderr]  99 | homepage = "https://github.com/cauliyang/DeepBioP"
[INFO] [stderr]     |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 104 | repository = "https://github.com/cauliyang/DeepBioP"
[INFO] [stderr]     |              ---------------------------------------
[INFO] [stderr]     |
[INFO] [stderr]     = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `deepbiop-utils` (manifest) generated 1 warning
[INFO] [stderr]    Compiling proc-macro2 v1.0.107
[INFO] [stderr]    Compiling thiserror v2.0.20
[INFO] [stderr]    Compiling anyhow v1.0.104
[INFO] [stderr]    Compiling quote v1.0.47
[INFO] [stderr]    Compiling syn v3.0.6
[INFO] [stderr]    Compiling syn v2.0.119
[INFO] [stderr]    Compiling synstructure v0.14.0
[INFO] [stderr]    Compiling bytemuck_derive v1.12.1
[INFO] [stderr]    Compiling serde_derive v1.0.229
[INFO] [stderr]    Compiling zerovec-derive v0.11.6
[INFO] [stderr]    Compiling displaydoc v0.2.7
[INFO] [stderr]    Compiling thiserror-impl v2.0.20
[INFO] [stderr]    Compiling darling_core v0.20.11
[INFO] [stderr]    Compiling pest_generator v2.9.1
[INFO] [stderr]    Compiling zerofrom-derive v0.1.8
[INFO] [stderr]    Compiling yoke-derive v0.8.3
[INFO] [stderr]     Checking zerotrie v0.2.5
[INFO] [stderr]    Compiling zerocopy-derive v0.8.57
[INFO] [stderr]    Compiling monostate-impl v0.1.18
[INFO] [stderr]     Checking zerofrom v0.1.8
[INFO] [stderr]     Checking monostate v0.1.18
[INFO] [stderr]     Checking yoke v0.8.3
[INFO] [stderr]    Compiling pest_derive v2.9.1
[INFO] [stderr]     Checking zerovec v0.11.8
[INFO] [stderr]     Checking bytemuck v1.25.2
[INFO] [stderr]     Checking num-complex v0.4.6
[INFO] [stderr]     Checking dyn-stack v0.13.2
[INFO] [stderr]     Checking pulp v0.22.3
[INFO] [stderr]     Checking py_literal v0.4.0
[INFO] [stderr]     Checking zerocopy v0.8.57
[INFO] [stderr]     Checking serde v1.0.229
[INFO] [stderr]     Checking tinystr v0.8.4
[INFO] [stderr]     Checking potential_utf v0.1.6
[INFO] [stderr]     Checking icu_collections v2.3.0
[INFO] [stderr]     Checking icu_locale_core v2.3.0
[INFO] [stderr]     Checking compact_str v0.9.1
[INFO] [stderr]     Checking spm_precompiled v0.1.4
[INFO] [stderr]     Checking dary_heap v0.3.9
[INFO] [stderr]     Checking ndarray v0.17.2
[INFO] [stderr]     Checking safetensors v0.8.0
[INFO] [stderr]    Compiling darling_macro v0.20.11
[INFO] [stderr]    Compiling darling v0.20.11
[INFO] [stderr]    Compiling derive_builder_core v0.20.2
[INFO] [stderr]    Compiling derive_builder_macro v0.20.2
[INFO] [stderr]     Checking icu_provider v2.3.1
[INFO] [stderr]     Checking derive_builder v0.20.2
[INFO] [stderr]     Checking icu_locale_fallback v2.3.0
[INFO] [stderr]     Checking icu_segmenter v2.3.0
[INFO] [stderr]     Checking textwrap v0.16.4
[INFO] [stderr]     Checking ppv-lite86 v0.2.21
[INFO] [stderr]     Checking ahash v0.8.12
[INFO] [stderr]     Checking ndarray-npy v0.10.0
[INFO] [stderr]     Checking rand_chacha v0.9.0
[INFO] [stderr]     Checking rand v0.9.5
[INFO] [stderr]     Checking rand_distr v0.5.1
[INFO] [stderr]     Checking tokenizers v0.22.2
[INFO] [stderr]     Checking half v2.7.1
[INFO] [stderr]     Checking arrow-buffer v60.0.0
[INFO] [stderr]     Checking gemm-common v0.19.0
[INFO] [stderr]     Checking float8 v0.7.0
[INFO] [stderr]     Checking gemm-f32 v0.19.0
[INFO] [stderr]     Checking gemm-c32 v0.19.0
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[INFO] [stderr]     Checking gemm-f64 v0.19.0
[INFO] [stderr]     Checking arrow-data v60.0.0
[INFO] [stderr]     Checking gemm-f16 v0.19.0
[INFO] [stderr]     Checking gemm v0.19.0
[INFO] [stderr]     Checking arrow-array v60.0.0
[INFO] [stderr]     Checking candle-core v0.11.0
[INFO] [stderr]     Checking arrow-cmp v60.0.0
[INFO] [stderr]     Checking arrow-arith v60.0.0
[INFO] [stderr]     Checking arrow-row v60.0.0
[INFO] [stderr]     Checking arrow-select v60.0.0
[INFO] [stderr]     Checking arrow-ord v60.0.0
[INFO] [stderr]     Checking arrow-ipc v60.0.0
[INFO] [stderr]     Checking arrow-string v60.0.0
[INFO] [stderr]     Checking arrow-cast v60.0.0
[INFO] [stderr]     Checking parquet v60.0.0
[INFO] [stderr]     Checking arrow-csv v60.0.0
[INFO] [stderr]     Checking arrow-json v60.0.0
[INFO] [stderr]     Checking arrow v60.0.0
[INFO] [stderr]     Checking deepbiop-core v0.1.17
[INFO] [stderr]  Documenting deepbiop-utils v0.1.17 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unresolved link to `j`
[INFO] [stdout]   --> src/sampling.rs:20:79
[INFO] [stdout]    |
[INFO] [stdout] 20 | ///    by generating a random number j in [0, i]. If j < k, replace reservoir[j] with
[INFO] [stdout]    |                                                                               ^ no item named `j` in scope
[INFO] [stdout]    |
[INFO] [stdout]    = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]`
[INFO] [stdout]    = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `dev` profile [unoptimized + debuginfo] target(s) in 35.38s
[INFO] [stderr]    Generated /opt/rustwide/target/doc/deepbiop_utils/index.html
[INFO] running `Command { std: "docker" "inspect" "e84f8c19b1f2184b715afd90c7859f04a3a0d9fdb0936e6fc36e4246972e2179", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e84f8c19b1f2184b715afd90c7859f04a3a0d9fdb0936e6fc36e4246972e2179", kill_on_drop: false }`
[INFO] [stdout] e84f8c19b1f2184b715afd90c7859f04a3a0d9fdb0936e6fc36e4246972e2179