[INFO] fetching crate gen 0.3.1... [INFO] documenting gen-0.3.1 against 1.100.0-beta.1 for beta-rustdoc-1.100-2 [INFO] extracting crate gen 0.3.1 into /workspace/builds/worker-4-tc2/source [INFO] started tweaking crates.io crate gen 0.3.1 [INFO] finished tweaking crates.io crate gen 0.3.1 [INFO] tweaked toml for crates.io crate gen 0.3.1 written to /workspace/builds/worker-4-tc2/source/Cargo.toml [INFO] validating manifest of crates.io crate gen 0.3.1 on toolchain 1.100.0-beta.1 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate crates.io crate gen 0.3.1 already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-4-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] fa24b8e833b3deba018a87132828015702350d67ea2e0483dc878b8b2918adf9 [INFO] running `Command { std: "docker" "start" "fa24b8e833b3deba018a87132828015702350d67ea2e0483dc878b8b2918adf9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "fa24b8e833b3deba018a87132828015702350d67ea2e0483dc878b8b2918adf9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "fa24b8e833b3deba018a87132828015702350d67ea2e0483dc878b8b2918adf9" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "fa24b8e833b3deba018a87132828015702350d67ea2e0483dc878b8b2918adf9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "fa24b8e833b3deba018a87132828015702350d67ea2e0483dc878b8b2918adf9" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] Compiling quote v1.0.46 [INFO] [stderr] Checking typenum v1.20.0 [INFO] [stderr] Checking mio v1.2.0 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Checking hashbrown v0.17.1 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Checking http v1.4.0 [INFO] [stderr] Checking cmov v0.5.4 [INFO] [stderr] Compiling syn v2.0.118 [INFO] [stderr] Checking ctutils v0.4.2 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Checking spin v0.9.9 [INFO] [stderr] Compiling num-bigint-dig v0.8.6 [INFO] [stderr] Compiling thiserror v2.0.18 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Checking lazy_static v1.5.0 [INFO] [stderr] Compiling anyhow v1.0.103 [INFO] [stderr] Checking simd-adler32 v0.3.9 [INFO] [stderr] Compiling aws-lc-sys v0.40.0 [INFO] [stderr] Checking rand v0.8.6 [INFO] [stderr] Checking generic-array v0.14.7 [INFO] [stderr] Checking hybrid-array v0.4.14 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking num-iter v0.1.45 [INFO] [stderr] Compiling rustix v1.1.4 [INFO] [stderr] Checking miniz_oxide v0.8.9 [INFO] [stderr] Compiling crunchy v0.2.4 [INFO] [stderr] Checking indexmap v2.14.0 [INFO] [stderr] Checking asyncband v0.6.7 [INFO] [stderr] Checking crypto-common v0.1.7 [INFO] [stderr] Checking block-buffer v0.10.4 [INFO] [stderr] Checking block-padding v0.3.3 [INFO] [stderr] Checking inout v0.1.4 [INFO] [stderr] Checking crypto-common v0.2.2 [INFO] [stderr] Checking digest v0.10.7 [INFO] [stderr] Checking cipher v0.4.4 [INFO] [stderr] Checking block-buffer v0.12.1 [INFO] [stderr] Checking salsa20 v0.10.2 [INFO] [stderr] Checking sha2 v0.10.9 [INFO] [stderr] Checking hmac v0.12.1 [INFO] [stderr] Checking aes v0.8.4 [INFO] [stderr] Checking cbc v0.1.2 [INFO] [stderr] Checking signature v2.2.0 [INFO] [stderr] Checking unicode-segmentation v1.13.2 [INFO] [stderr] Checking pbkdf2 v0.12.2 [INFO] [stderr] Checking zlib-rs v0.6.3 [INFO] [stderr] Checking scrypt v0.11.0 [INFO] [stderr] Checking digest v0.11.3 [INFO] [stderr] Checking serde_json v1.0.149 [INFO] [stderr] Checking jiff v0.2.35 [INFO] [stderr] Checking uuid v1.23.1 [INFO] [stderr] Checking sha1 v0.11.0 [INFO] [stderr] Checking sha2 v0.11.0 [INFO] [stderr] Checking hmac v0.13.0 [INFO] [stderr] Checking md-5 v0.11.0 [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Compiling darling_core v0.23.0 [INFO] [stderr] Compiling ring v0.17.14 [INFO] [stderr] Compiling ahash v0.8.12 [INFO] [stderr] Compiling aws-lc-rs v1.16.3 [INFO] [stderr] Compiling getrandom v0.2.17 [INFO] [stderr] Checking flate2 v1.1.9 [INFO] [stderr] Checking crossbeam-channel v0.5.15 [INFO] [stderr] Compiling tiny-keccak v2.0.2 [INFO] [stderr] Checking castaway v0.2.4 [INFO] [stderr] Checking bstr v1.12.1 [INFO] [stderr] Compiling once_cell v1.21.4 [INFO] [stderr] Compiling zeroize_derive v1.4.3 [INFO] [stderr] Compiling futures-macro v0.3.32 [INFO] [stderr] Compiling tokio-macros v2.7.0 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Checking zeroize v1.8.2 [INFO] [stderr] Compiling zerofrom-derive v0.1.7 [INFO] [stderr] Checking tokio v1.52.2 [INFO] [stderr] Compiling yoke-derive v0.8.2 [INFO] [stderr] Checking futures-util v0.3.32 [INFO] [stderr] Checking zerofrom v0.1.7 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Checking yoke v0.8.2 [INFO] [stderr] Compiling zerovec-derive v0.11.3 [INFO] [stderr] Checking der v0.7.10 [INFO] [stderr] Checking zerotrie v0.2.4 [INFO] [stderr] Compiling thiserror-impl v2.0.18 [INFO] [stderr] Checking spki v0.7.3 [INFO] [stderr] Checking zerovec v0.11.6 [INFO] [stderr] Checking pkcs5 v0.7.1 [INFO] [stderr] Checking serde v1.0.228 [INFO] [stderr] Checking pkcs8 v0.10.2 [INFO] [stderr] Checking pkcs1 v0.7.5 [INFO] [stderr] Checking tinystr v0.8.3 [INFO] [stderr] Checking potential_utf v0.1.5 [INFO] [stderr] Checking icu_collections v2.2.0 [INFO] [stderr] Compiling darling_macro v0.23.0 [INFO] [stderr] Checking icu_locale_core v2.2.0 [INFO] [stderr] Checking quick-xml v0.41.0 [INFO] [stderr] Checking futures-executor v0.3.32 [INFO] [stderr] Checking rsa v0.9.10 [INFO] [stderr] Checking rustls-pki-types v1.14.1 [INFO] [stderr] Checking futures v0.3.32 [INFO] [stderr] Checking tokio-util v0.7.18 [INFO] [stderr] Compiling strum_macros v0.27.2 [INFO] [stderr] Compiling darling v0.23.0 [INFO] [stderr] Checking lexical-util v1.0.7 [INFO] [stderr] Checking icu_provider v2.2.0 [INFO] [stderr] Compiling indoc v2.0.7 [INFO] [stderr] Checking icu_properties v2.2.0 [INFO] [stderr] Checking icu_normalizer v2.2.0 [INFO] [stderr] Checking reqsign-core v3.3.0 [INFO] [stderr] Checking compact_str v0.9.0 [INFO] [stderr] Checking noodles-bgzf v0.43.0 [INFO] [stderr] Checking kasuari v0.4.12 [INFO] [stderr] Checking noodles-core v0.18.0 [INFO] [stderr] Compiling const-random-macro v0.1.16 [INFO] [stderr] Checking lru v0.16.4 [INFO] [stderr] Checking unicode-truncate v2.0.1 [INFO] [stderr] Checking hashbrown v0.14.5 [INFO] [stderr] Checking const-random v0.1.18 [INFO] [stderr] Checking http-body v1.0.1 [INFO] [stderr] Compiling instability v0.3.12 [INFO] [stderr] Compiling rustls v0.23.40 [INFO] [stderr] Checking bit-vec v0.8.0 [INFO] [stderr] Checking dlv-list v0.5.2 [INFO] [stderr] Checking lexical-parse-integer v1.0.6 [INFO] [stderr] Checking noodles-csi v0.51.0 [INFO] [stderr] Checking lexical-write-integer v1.0.6 [INFO] [stderr] Compiling signal-hook v0.3.18 [INFO] [stderr] Checking idna_adapter v1.2.2 [INFO] [stderr] Checking ordered-multimap v0.7.3 [INFO] [stderr] Checking idna v1.1.0 [INFO] [stderr] Checking lexical-write-float v1.0.6 [INFO] [stderr] Compiling convert_case v0.10.0 [INFO] [stderr] Checking lexical-parse-float v1.0.6 [INFO] [stderr] Checking url v2.5.8 [INFO] [stderr] Checking serde_urlencoded v0.7.1 [INFO] [stderr] Compiling libdoltlite-sys v0.38.20 [INFO] [stderr] Compiling derive_more-impl v2.1.1 [INFO] [stderr] Checking lexical-core v1.0.6 [INFO] [stderr] Checking opendal-core v0.58.2 [INFO] [stderr] Checking hyper v1.9.0 [INFO] [stderr] Checking tracing v0.1.44 [INFO] [stderr] Checking rust-ini v0.21.3 [INFO] [stderr] Checking num_threads v0.1.7 [INFO] [stderr] Checking strum v0.27.2 [INFO] [stderr] Compiling capnp v0.24.1 [INFO] [stderr] Checking ratatui-core v0.1.0 [INFO] [stderr] Checking time v0.3.47 [INFO] [stderr] Checking reqsign-aws-core v3.1.0 [INFO] [stderr] Checking hyper-util v0.1.20 [INFO] [stderr] Checking derive_more v2.1.1 [INFO] [stderr] Checking signal-hook-mio v0.2.5 [INFO] [stderr] Checking tower v0.5.3 [INFO] [stderr] Checking noodles-tabix v0.57.0 [INFO] [stderr] Checking webpki-roots v1.0.7 [INFO] [stderr] Checking rustls-native-certs v0.8.3 [INFO] [stderr] Compiling darling_core v0.20.11 [INFO] [stderr] Checking reqsign-aws-v4 v3.2.0 [INFO] [stderr] Checking tower-http v0.6.9 [INFO] [stderr] Checking crossterm v0.29.0 [INFO] [stderr] Checking noodles-gff v0.52.0 [INFO] [stderr] Checking http-body-util v0.1.3 [INFO] [stderr] Checking reqsign-file-read-tokio v3.0.5 [INFO] [stderr] Checking hashlink v0.12.0 [INFO] [stderr] Checking line-clipping v0.3.7 [INFO] [stderr] Checking fixedbitset v0.4.2 [INFO] [stderr] Checking petgraph v0.6.5 [INFO] [stderr] Compiling capnpc v0.24.1 [INFO] [stderr] Checking ratatui-widgets v0.3.0 [INFO] [stderr] Checking ratatui-crossterm v0.1.0 [INFO] [stderr] Checking regex-automata v0.4.14 [INFO] [stderr] Checking rand v0.10.1 [INFO] [stderr] Checking noodles-gtf v0.47.0 [INFO] [stderr] Checking noodles-bed v0.28.0 [INFO] [stderr] Checking noodles-vcf v0.81.0 [INFO] [stderr] Checking noodles-fasta v0.56.0 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Checking pem v4.0.0 [INFO] [stderr] Compiling gen-capnp-schemas v0.3.1 [INFO] [stderr] Checking spin v0.10.1 [INFO] [stderr] Checking pure-rust-locales v0.8.2 [INFO] [stderr] Compiling darling_macro v0.20.11 [INFO] [stderr] Compiling prettyplease v0.2.37 [INFO] [stderr] Compiling darling v0.20.11 [INFO] [stderr] Checking thiserror v1.0.69 [INFO] [stderr] Checking crc-fast v1.10.0 [INFO] [stderr] Checking reqsign-azure-storage v3.2.0 [INFO] [stderr] Checking noodles v0.101.0 [INFO] [stderr] Checking backon v1.6.0 [INFO] [stderr] Checking opendal-service-azure-common v0.58.2 [INFO] [stderr] Checking reqsign-google v3.1.0 [INFO] [stderr] Checking xattr v1.6.1 [INFO] [stderr] Compiling async-trait v0.1.89 [INFO] [stderr] Compiling include_dir_macros v0.7.4 [INFO] [stderr] Compiling rusqdoltlite_migration v2.6.4 [INFO] [stderr] Checking link-section v0.19.3 [INFO] [stderr] Checking xxhash-rust v0.8.16 [INFO] [stderr] Compiling linktime-proc-macro v0.2.3 [INFO] [stderr] Checking include_dir v0.7.4 [INFO] [stderr] Checking opendal-service-s3 v0.58.2 [INFO] [stderr] Checking opendal-service-azblob v0.58.2 [INFO] [stderr] Checking 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bon-macros v3.9.1 [INFO] [stderr] Checking tempfile v3.27.0 [INFO] [stderr] Checking cached v0.55.1 [INFO] [stderr] Checking hash32 v0.3.1 [INFO] [stderr] Compiling gen-models-macros v0.3.1 [INFO] [stderr] Checking str_indices v0.4.4 [INFO] [stderr] Compiling getrandom v0.3.4 [INFO] [stderr] Checking ropey v1.6.1 [INFO] [stderr] Compiling crc32c v0.6.8 [INFO] [stderr] Checking ratatui-macros v0.7.0 [INFO] [stderr] Checking rat-reloc v2.0.2 [INFO] [stderr] Checking anpa v0.10.0 [INFO] [stderr] Compiling zip v2.4.2 [INFO] [stderr] Checking bumpalo v3.20.3 [INFO] [stderr] Checking micromath v2.1.0 [INFO] [stderr] Checking clap_builder v4.6.0 [INFO] [stderr] Checking zopfli v0.8.3 [INFO] [stderr] Checking dirs-sys v0.5.0 [INFO] [stderr] Checking rat-scrolled v2.0.2 [INFO] [stderr] Checking rat-focus v2.1.1 [INFO] [stderr] Checking ratatui v0.30.0 [INFO] [stderr] Checking bzip2 v0.5.2 [INFO] [stderr] Checking xz2 v0.1.7 [INFO] [stderr] Checking rstar v0.12.2 [INFO] [stderr] Checking regex-cursor v0.1.5 [INFO] [stderr] Checking lzma-rs v0.3.0 [INFO] [stderr] Checking env_filter v1.0.1 [INFO] [stderr] Checking format_num_pattern v0.9.5 [INFO] [stderr] Checking gen-sugiyama v0.3.1 [INFO] [stderr] Compiling clap_derive v4.6.1 [INFO] [stderr] Checking unicode-display-width v0.3.0 [INFO] [stderr] Checking console v0.16.3 [INFO] [stderr] Checking sha1 v0.10.6 [INFO] [stderr] Checking nom v8.0.0 [INFO] [stderr] Checking ftree v1.3.0 [INFO] [stderr] Checking rat-cursor v2.0.0 [INFO] [stderr] Checking circular v0.3.0 [INFO] [stderr] Checking rustc-hash v2.1.2 [INFO] [stderr] Checking deflate64 v0.1.12 [INFO] [stderr] Checking unit-prefix v0.5.2 [INFO] [stderr] Checking iset v0.3.1 [INFO] [stderr] Checking indicatif v0.18.4 [INFO] [stderr] Checking rat-text v3.1.0 [INFO] [stderr] Checking csv v1.4.0 [INFO] [stderr] Checking env_logger v0.11.10 [INFO] [stderr] Checking directories v6.0.0 [INFO] [stderr] Checking url-parse v1.0.10 [INFO] [stderr] Checking tui-widget-list v0.15.2 [INFO] [stderr] Checking webbrowser v1.2.4 [INFO] [stderr] Checking convert_case v0.8.0 [INFO] [stderr] Checking clap v4.6.1 [INFO] [stderr] Checking md-5 v0.10.6 [INFO] [stderr] Checking bon v3.9.1 [INFO] [stderr] Checking tachyonfx v0.23.0 [INFO] [stderr] Checking gb-io v0.9.0 [INFO] [stderr] Checking gen-tui v0.3.1 [INFO] [stderr] Checking rustls-webpki v0.103.13 [INFO] [stderr] Checking tokio-rustls v0.26.4 [INFO] [stderr] Checking rustls-platform-verifier v0.7.0 [INFO] [stderr] Checking hyper-rustls v0.27.9 [INFO] [stderr] Checking reqwest v0.13.4 [INFO] [stderr] Checking reqwest v0.12.28 [INFO] [stderr] Checking rusqdoltlite v0.40.20 [INFO] [stderr] Checking opendal-http-transport-reqwest v0.58.2 [INFO] [stderr] Checking opendal v0.58.2 [INFO] [stderr] Checking gen-core v0.3.1 [INFO] [stderr] Checking gen-graph v0.3.1 [INFO] [stderr] Checking gen-models v0.3.1 [INFO] [stderr] Checking gen-diff v0.3.1 [INFO] [stderr] Checking gen-annotations v0.3.1 [INFO] [stderr] Documenting gen v0.3.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: unresolved link to `start:end` [INFO] [stdout] --> src/genbank.rs:92:79 [INFO] [stdout] | [INFO] [stdout] 92 | /// This is so there is an easy mapping to carry out an edit via old_sequence[start:end] = new_sequence [INFO] [stdout] | ^^^^^^^^^ invalid path separator [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `delim` [INFO] [stdout] --> src/gfa_reader.rs:550:19 [INFO] [stdout] | [INFO] [stdout] 550 | /// [sample_name][delim][haplotype_id][delim][contig_or_scaffold_name] [INFO] [stdout] | ^^^^^ no item named `delim` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `delim` [INFO] [stdout] --> src/gfa_reader.rs:550:40 [INFO] [stdout] | [INFO] [stdout] 550 | /// [sample_name][delim][haplotype_id][delim][contig_or_scaffold_name] [INFO] [stdout] | ^^^^^ no item named `delim` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `contig_or_scaffold_name` [INFO] [stdout] --> src/gfa_reader.rs:550:47 [INFO] [stdout] | [INFO] [stdout] 550 | /// [sample_name][delim][haplotype_id][delim][contig_or_scaffold_name] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ no item named `contig_or_scaffold_name` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: this URL is not a hyperlink [INFO] [stdout] --> src/commands/mod.rs:76:28 [INFO] [stdout] | [INFO] [stdout] 76 | /// Example: gen clone https://www.genhub.bio/api/repos/david-genhub-bio/addgene-plasmid-122028-genbank-diff [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: bare URLs are not automatically turned into clickable links [INFO] [stdout] = note: `#[warn(rustdoc::bare_urls)]` on by default [INFO] [stdout] help: use an automatic link instead [INFO] [stdout] | [INFO] [stdout] 76 | /// Example: gen clone [INFO] [stdout] | + + [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unclosed HTML tag `number` [INFO] [stdout] --> src/commands/mod.rs:167:76 [INFO] [stdout] | [INFO] [stdout] 167 | /// multiple or discontinuous selections use commas. HEAD and HEAD~ are supported. [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(rustdoc::invalid_html_tags)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: Rust code block is empty [INFO] [stdout] --> src/gfa_reader.rs:583:9 [INFO] [stdout] | [INFO] [stdout] 583 | /// ``` [INFO] [stdout] | _________^ [INFO] [stdout] 584 | | /// ``` [INFO] [stdout] | |___________^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(rustdoc::invalid_rust_codeblocks)]` on by default [INFO] [stdout] help: mark blocks that do not contain Rust code as text [INFO] [stdout] | [INFO] [stdout] 583 | /// ```text [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 2m 09s [INFO] [stderr] Generated /opt/rustwide/target/doc/gen/index.html [INFO] running `Command { std: "docker" "inspect" "fa24b8e833b3deba018a87132828015702350d67ea2e0483dc878b8b2918adf9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-e" "DOCS_RS=1" "-e" "RUSTC_BOOTSTRAP=1" "-w" "/opt/rustwide/workdir" "--user" "0:0" "fa24b8e833b3deba018a87132828015702350d67ea2e0483dc878b8b2918adf9" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "rustdoc" "--lib" "-Zrustdoc-map" "--config" "build.rustdocflags=[\"--cfg\", \"docsrs\", \"-Z\", \"unstable-options\", \"--document-private-items\"]" "--frozen" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] Compiling proc-macro2 v1.0.106 [INFO] [stderr] Compiling thiserror v2.0.18 [INFO] [stderr] Compiling anyhow v1.0.103 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling quote v1.0.46 [INFO] [stderr] Compiling syn v2.0.118 [INFO] [stderr] Compiling include_dir_macros v0.7.4 [INFO] [stderr] Checking include_dir v0.7.4 [INFO] [stderr] Checking rusqdoltlite_migration v2.6.4 [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Compiling darling_core v0.23.0 [INFO] [stderr] Compiling darling_core v0.20.11 [INFO] [stderr] Compiling prettyplease v0.2.37 [INFO] [stderr] Compiling zeroize_derive v1.4.3 [INFO] [stderr] Compiling futures-macro v0.3.32 [INFO] [stderr] Compiling tokio-macros v2.7.0 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling zerofrom-derive v0.1.7 [INFO] [stderr] Checking zeroize v1.8.2 [INFO] [stderr] Checking tokio v1.52.2 [INFO] [stderr] Compiling yoke-derive v0.8.2 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Checking futures-util v0.3.32 [INFO] [stderr] Checking zerofrom v0.1.7 [INFO] [stderr] Compiling zerovec-derive v0.11.3 [INFO] [stderr] Checking der v0.7.10 [INFO] [stderr] Checking yoke v0.8.2 [INFO] [stderr] Checking zerotrie v0.2.4 [INFO] [stderr] Compiling thiserror-impl v2.0.18 [INFO] [stderr] Checking spki v0.7.3 [INFO] [stderr] Checking num-bigint-dig v0.8.6 [INFO] [stderr] Checking zerovec v0.11.6 [INFO] [stderr] Checking pkcs5 v0.7.1 [INFO] [stderr] Checking pkcs8 v0.10.2 [INFO] [stderr] Compiling darling_macro v0.23.0 [INFO] [stderr] Checking pkcs1 v0.7.5 [INFO] [stderr] Compiling darling v0.23.0 [INFO] [stderr] Checking rustls-pki-types v1.14.1 [INFO] [stderr] Compiling strum_macros v0.27.2 [INFO] [stderr] Checking tinystr v0.8.3 [INFO] [stderr] Checking potential_utf v0.1.5 [INFO] [stderr] Checking icu_locale_core v2.2.0 [INFO] [stderr] Checking icu_collections v2.2.0 [INFO] [stderr] Checking kasuari v0.4.12 [INFO] [stderr] Checking futures-executor v0.3.32 [INFO] [stderr] Checking rsa v0.9.10 [INFO] [stderr] Checking futures v0.3.32 [INFO] [stderr] Checking aws-lc-rs v1.16.3 [INFO] [stderr] Compiling instability v0.3.12 [INFO] [stderr] Checking serde v1.0.228 [INFO] [stderr] Compiling derive_more-impl v2.1.1 [INFO] [stderr] Checking icu_provider v2.2.0 [INFO] [stderr] Checking webpki-roots v1.0.7 [INFO] [stderr] Checking rustls-native-certs v0.8.3 [INFO] [stderr] Compiling darling_macro v0.20.11 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Checking reqsign-core v3.3.0 [INFO] [stderr] Checking icu_properties v2.2.0 [INFO] [stderr] Checking icu_normalizer v2.2.0 [INFO] [stderr] Checking quick-xml v0.41.0 [INFO] [stderr] Checking rustls-webpki v0.103.13 [INFO] [stderr] Checking serde_urlencoded v0.7.1 [INFO] [stderr] Checking derive_more v2.1.1 [INFO] [stderr] Checking crossterm v0.29.0 [INFO] [stderr] Checking strum v0.27.2 [INFO] [stderr] Checking petgraph v0.6.5 [INFO] [stderr] Checking ratatui-core v0.1.0 [INFO] [stderr] Checking tokio-util v0.7.18 [INFO] [stderr] Checking rustls v0.23.40 [INFO] [stderr] Checking hyper v1.9.0 [INFO] [stderr] Checking tower v0.5.3 [INFO] [stderr] Checking noodles-bgzf v0.43.0 [INFO] [stderr] Checking idna_adapter v1.2.2 [INFO] [stderr] Checking idna v1.1.0 [INFO] [stderr] Checking reqsign-aws-core v3.1.0 [INFO] [stderr] Checking reqsign-file-read-tokio v3.0.5 [INFO] [stderr] Checking hyper-util v0.1.20 [INFO] [stderr] Checking url v2.5.8 [INFO] [stderr] Checking backon v1.6.0 [INFO] [stderr] Checking ratatui-widgets v0.3.0 [INFO] [stderr] Checking noodles-csi v0.51.0 [INFO] [stderr] Checking noodles-fasta v0.56.0 [INFO] [stderr] Checking opendal-core v0.58.2 [INFO] [stderr] Checking tower-http v0.6.9 [INFO] [stderr] Checking ratatui-crossterm v0.1.0 [INFO] [stderr] Checking reqsign-azure-storage v3.2.0 [INFO] [stderr] Checking noodles-tabix v0.57.0 [INFO] [stderr] Checking reqsign-aws-v4 v3.2.0 [INFO] [stderr] Checking noodles-gff v0.52.0 [INFO] [stderr] Compiling darling v0.20.11 [INFO] [stderr] Compiling async-trait v0.1.89 [INFO] [stderr] Compiling cached_proc_macro v0.24.0 [INFO] [stderr] Checking noodles-bed v0.28.0 [INFO] [stderr] Checking noodles-gtf v0.47.0 [INFO] [stderr] Checking noodles-vcf v0.81.0 [INFO] [stderr] Checking reqsign-google v3.1.0 [INFO] [stderr] Checking chrono v0.4.44 [INFO] [stderr] Checking cobs v0.3.0 [INFO] [stderr] Checking postcard v1.1.3 [INFO] [stderr] Checking rat-event v2.1.0 [INFO] [stderr] Compiling bon-macros v3.9.1 [INFO] [stderr] Compiling gen-models-macros v0.3.1 [INFO] [stderr] Checking tokio-rustls v0.26.4 [INFO] [stderr] Checking rustls-platform-verifier v0.7.0 [INFO] [stderr] Checking hyper-rustls v0.27.9 [INFO] [stderr] Checking cached v0.55.1 [INFO] [stderr] Checking reqwest v0.13.4 [INFO] [stderr] Checking ratatui-macros v0.7.0 [INFO] [stderr] Checking rat-reloc v2.0.2 [INFO] [stderr] Checking rat-scrolled v2.0.2 [INFO] [stderr] Checking ratatui v0.30.0 [INFO] [stderr] Checking rat-focus v2.1.1 [INFO] [stderr] Checking gen-sugiyama v0.3.1 [INFO] [stderr] Checking rstar v0.12.2 [INFO] [stderr] Checking noodles v0.101.0 [INFO] [stderr] Checking gen-core v0.3.1 [INFO] [stderr] Compiling clap_derive v4.6.1 [INFO] [stderr] Checking rat-text v3.1.0 [INFO] [stderr] Checking reqwest v0.12.28 [INFO] [stderr] Checking tui-widget-list v0.15.2 [INFO] [stderr] Checking webbrowser v1.2.4 [INFO] [stderr] Checking gen-graph v0.3.1 [INFO] [stderr] Checking gb-io v0.9.0 [INFO] [stderr] Checking zip v2.4.2 [INFO] [stderr] Checking opendal-service-azure-common v0.58.2 [INFO] [stderr] Checking opendal-service-gcs v0.58.2 [INFO] [stderr] Checking opendal-service-azblob v0.58.2 [INFO] [stderr] Checking opendal-layer-retry v0.58.2 [INFO] [stderr] Checking opendal-layer-timeout v0.58.2 [INFO] [stderr] Checking opendal-service-s3 v0.58.2 [INFO] [stderr] Checking opendal-service-http v0.58.2 [INFO] [stderr] Checking opendal-http-transport-reqwest v0.58.2 [INFO] [stderr] Checking opendal-layer-concurrent-limit v0.58.2 [INFO] [stderr] Checking opendal-layer-logging v0.58.2 [INFO] [stderr] Checking opendal-service-fs v0.58.2 [INFO] [stderr] Checking clap v4.6.1 [INFO] [stderr] Checking opendal v0.58.2 [INFO] [stderr] Checking bon v3.9.1 [INFO] [stderr] Checking tachyonfx v0.23.0 [INFO] [stderr] Checking gen-models v0.3.1 [INFO] [stderr] Checking gen-tui v0.3.1 [INFO] [stderr] Checking gen-diff v0.3.1 [INFO] [stderr] Checking gen-annotations v0.3.1 [INFO] [stderr] Documenting gen v0.3.1 (/opt/rustwide/workdir) [INFO] [stdout] warning: unresolved link to `start:end` [INFO] [stdout] --> src/genbank.rs:92:79 [INFO] [stdout] | [INFO] [stdout] 92 | /// This is so there is an easy mapping to carry out an edit via old_sequence[start:end] = new_sequence [INFO] [stdout] | ^^^^^^^^^ invalid path separator [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] = note: `#[warn(rustdoc::broken_intra_doc_links)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `delim` [INFO] [stdout] --> src/gfa_reader.rs:550:19 [INFO] [stdout] | [INFO] [stdout] 550 | /// [sample_name][delim][haplotype_id][delim][contig_or_scaffold_name] [INFO] [stdout] | ^^^^^ no item named `delim` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `delim` [INFO] [stdout] --> src/gfa_reader.rs:550:40 [INFO] [stdout] | [INFO] [stdout] 550 | /// [sample_name][delim][haplotype_id][delim][contig_or_scaffold_name] [INFO] [stdout] | ^^^^^ no item named `delim` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unresolved link to `contig_or_scaffold_name` [INFO] [stdout] --> src/gfa_reader.rs:550:47 [INFO] [stdout] | [INFO] [stdout] 550 | /// [sample_name][delim][haplotype_id][delim][contig_or_scaffold_name] [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^ no item named `contig_or_scaffold_name` in scope [INFO] [stdout] | [INFO] [stdout] = help: to escape `[` and `]` characters, add '\' before them like `\[` or `\]` [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: this URL is not a hyperlink [INFO] [stdout] --> src/commands/mod.rs:76:28 [INFO] [stdout] | [INFO] [stdout] 76 | /// Example: gen clone https://www.genhub.bio/api/repos/david-genhub-bio/addgene-plasmid-122028-genbank-diff [INFO] [stdout] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: bare URLs are not automatically turned into clickable links [INFO] [stdout] = note: `#[warn(rustdoc::bare_urls)]` on by default [INFO] [stdout] help: use an automatic link instead [INFO] [stdout] | [INFO] [stdout] 76 | /// Example: gen clone [INFO] [stdout] | + + [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: unclosed HTML tag `number` [INFO] [stdout] --> src/commands/mod.rs:167:76 [INFO] [stdout] | [INFO] [stdout] 167 | /// multiple or discontinuous selections use commas. HEAD and HEAD~ are supported. [INFO] [stdout] | ^^^^^^^^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(rustdoc::invalid_html_tags)]` on by default [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] warning: Rust code block is empty [INFO] [stdout] --> src/gfa_reader.rs:583:9 [INFO] [stdout] | [INFO] [stdout] 583 | /// ``` [INFO] [stdout] | _________^ [INFO] [stdout] 584 | | /// ``` [INFO] [stdout] | |___________^ [INFO] [stdout] | [INFO] [stdout] = note: `#[warn(rustdoc::invalid_rust_codeblocks)]` on by default [INFO] [stdout] help: mark blocks that do not contain Rust code as text [INFO] [stdout] | [INFO] [stdout] 583 | /// ```text [INFO] [stdout] | ++++ [INFO] [stdout] [INFO] [stdout] [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 1m 04s [INFO] [stderr] Generated /opt/rustwide/target/doc/gen/index.html [INFO] running `Command { std: "docker" "inspect" "fa24b8e833b3deba018a87132828015702350d67ea2e0483dc878b8b2918adf9", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "fa24b8e833b3deba018a87132828015702350d67ea2e0483dc878b8b2918adf9", kill_on_drop: false }` [INFO] [stdout] fa24b8e833b3deba018a87132828015702350d67ea2e0483dc878b8b2918adf9