[INFO] cloning repository https://github.com/keithyin/aligned_bam_stat [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/keithyin/aligned_bam_stat" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Faligned_bam_stat", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Faligned_bam_stat'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 9c2436638b62703967cadf74ba6ffbe419e4e166 [INFO] documenting keithyin/aligned_bam_stat against 1.100.0-beta.1 for beta-rustdoc-1.100-2 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fkeithyin%2Faligned_bam_stat" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'... [INFO] [stderr] done. [INFO] started tweaking git repo https://github.com/keithyin/aligned_bam_stat [INFO] finished tweaking git repo https://github.com/keithyin/aligned_bam_stat [INFO] tweaked toml for git repo https://github.com/keithyin/aligned_bam_stat written to /workspace/builds/worker-6-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/keithyin/aligned_bam_stat on toolchain 1.100.0-beta.1 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/keithyin/aligned_bam_stat already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] 0683dbe2d15f51d3b0a61d45e7fc417811c030e8ea5998db7838e14ef0354a95 [INFO] running `Command { std: "docker" "start" "0683dbe2d15f51d3b0a61d45e7fc417811c030e8ea5998db7838e14ef0354a95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "0683dbe2d15f51d3b0a61d45e7fc417811c030e8ea5998db7838e14ef0354a95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "0683dbe2d15f51d3b0a61d45e7fc417811c030e8ea5998db7838e14ef0354a95" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "0683dbe2d15f51d3b0a61d45e7fc417811c030e8ea5998db7838e14ef0354a95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "0683dbe2d15f51d3b0a61d45e7fc417811c030e8ea5998db7838e14ef0354a95" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "doc" "--frozen" "--no-deps" "--document-private-items" "--message-format=json", kill_on_drop: false }` [INFO] [stderr] Compiling syn v1.0.109 [INFO] [stderr] Checking regex-syntax v0.8.10 [INFO] [stderr] Checking either v1.15.0 [INFO] [stderr] Checking zerocopy v0.8.48 [INFO] [stderr] Compiling target-features v0.1.6 [INFO] [stderr] Checking num-traits v0.2.19 [INFO] [stderr] Compiling jobserver v0.1.34 [INFO] [stderr] Compiling smartstring v1.0.1 [INFO] [stderr] Compiling polars-utils v0.36.2 [INFO] [stderr] Compiling bytemuck_derive v1.10.2 [INFO] [stderr] Compiling synstructure v0.13.2 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Checking indexmap v2.14.0 [INFO] [stderr] Checking rand_core v0.6.4 [INFO] [stderr] Compiling zerovec-derive v0.11.3 [INFO] [stderr] Checking simdutf8 v0.1.5 [INFO] [stderr] Checking rayon v1.12.0 [INFO] [stderr] Compiling displaydoc v0.2.5 [INFO] [stderr] Compiling polars-arrow v0.36.2 [INFO] [stderr] Compiling cc v1.2.61 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling rustix v1.1.4 [INFO] [stderr] Checking parking_lot_core v0.9.12 [INFO] [stderr] Compiling zerofrom-derive v0.1.7 [INFO] [stderr] Compiling yoke-derive v0.8.2 [INFO] [stderr] Checking fast-float v0.2.0 [INFO] [stderr] Checking foreign_vec v0.1.0 [INFO] [stderr] Checking bitflags v2.11.1 [INFO] [stderr] Checking linux-raw-sys v0.12.1 [INFO] [stderr] Checking chrono v0.4.44 [INFO] [stderr] Checking atoi_simd v0.15.6 [INFO] [stderr] Checking streaming-iterator v0.1.9 [INFO] [stderr] Checking strength_reduce v0.2.4 [INFO] [stderr] Checking ethnum v1.5.3 [INFO] [stderr] Checking parking_lot v0.12.5 [INFO] [stderr] Compiling polars-compute v0.36.2 [INFO] [stderr] Compiling glob v0.3.3 [INFO] [stderr] Compiling cmake v0.1.58 [INFO] [stderr] Compiling openssl-src v300.6.0+3.6.2 [INFO] [stderr] Checking bytemuck v1.25.0 [INFO] [stderr] Checking thiserror v1.0.69 [INFO] [stderr] Compiling polars-core v0.36.2 [INFO] [stderr] Compiling clang-sys v1.8.1 [INFO] [stderr] Checking unicode-segmentation v1.13.2 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling polars-ops v0.36.2 [INFO] [stderr] Compiling memchr v2.8.0 [INFO] [stderr] Checking argminmax v0.6.3 [INFO] [stderr] Compiling matrixmultiply v0.3.10 [INFO] [stderr] Checking regex-automata v0.4.14 [INFO] [stderr] Checking crossterm v0.29.0 [INFO] [stderr] Compiling semver v0.1.20 [INFO] [stderr] Compiling bindgen v0.69.5 [INFO] [stderr] Compiling openssl-sys v0.9.114 [INFO] [stderr] Compiling libz-sys v1.1.28 [INFO] [stderr] Checking zerofrom v0.1.7 [INFO] [stderr] Compiling itertools v0.12.1 [INFO] [stderr] Checking yoke v0.8.2 [INFO] [stderr] Compiling rustc_version v0.1.7 [INFO] [stderr] Compiling bzip2-sys v0.1.13+1.0.8 [INFO] [stderr] Checking comfy-table v7.2.2 [INFO] [stderr] Checking zerovec v0.11.6 [INFO] [stderr] Checking zerotrie v0.2.4 [INFO] [stderr] Compiling nom v7.1.3 [INFO] [stderr] Compiling lzma-sys v0.1.20 [INFO] [stderr] Compiling curl-sys v0.4.87+curl-8.19.0 [INFO] [stderr] Checking now v0.1.3 [INFO] [stderr] Checking safe_arch v0.7.4 [INFO] [stderr] Checking num-integer v0.1.46 [INFO] [stderr] Checking num-complex v0.4.6 [INFO] [stderr] Checking atoi v2.0.0 [INFO] [stderr] Compiling strum_macros v0.25.3 [INFO] [stderr] Checking tinystr v0.8.3 [INFO] [stderr] Checking icu_locale_core v2.2.0 [INFO] [stderr] Checking potential_utf v0.1.5 [INFO] [stderr] Compiling fs-utils v1.1.4 [INFO] [stderr] Checking wide v0.7.33 [INFO] [stderr] Checking icu_collections v2.2.0 [INFO] [stderr] Compiling newtype_derive v0.1.6 [INFO] [stderr] Compiling cexpr v0.6.0 [INFO] [stderr] Checking regex v1.12.3 [INFO] [stderr] Checking icu_provider v2.2.0 [INFO] [stderr] Checking approx v0.5.1 [INFO] [stderr] Checking memmap2 v0.7.1 [INFO] [stderr] Compiling polars-plan v0.36.2 [INFO] [stderr] Checking num-rational v0.4.2 [INFO] [stderr] Compiling strum_macros v0.26.4 [INFO] [stderr] Checking ppv-lite86 v0.2.21 [INFO] [stderr] Checking ahash v0.8.12 [INFO] [stderr] Checking serde v1.0.228 [INFO] [stderr] Checking icu_properties v2.2.0 [INFO] [stderr] Checking icu_normalizer v2.2.0 [INFO] [stderr] Checking polars-error v0.36.2 [INFO] [stderr] Checking hashbrown v0.14.5 [INFO] [stderr] Compiling derive-new v0.6.0 [INFO] [stderr] Compiling polars-lazy v0.36.2 [INFO] [stderr] Checking rand_chacha v0.3.1 [INFO] [stderr] Compiling portable-atomic v1.13.1 [INFO] [stderr] Compiling getrandom v0.4.2 [INFO] [stderr] Checking simba v0.6.0 [INFO] [stderr] Checking rand v0.8.6 [INFO] [stderr] Checking simd-adler32 v0.3.9 [INFO] [stderr] Checking typenum v1.20.0 [INFO] [stderr] Checking deranged v0.5.8 [INFO] [stderr] Checking miniz_oxide v0.8.9 [INFO] [stderr] Checking form_urlencoded v1.2.2 [INFO] [stderr] Compiling enum-map-derive v0.17.0 [INFO] [stderr] Compiling tracing-attributes v0.1.31 [INFO] [stderr] Checking csv-core v0.1.13 [INFO] [stderr] Compiling polars v0.36.2 [INFO] [stderr] Checking rand_distr v0.4.3 [INFO] [stderr] Checking bit-vec v0.6.3 [INFO] [stderr] Checking num-conv v0.2.1 [INFO] [stderr] Checking num_threads v0.1.7 [INFO] [stderr] Checking custom_derive v0.1.7 [INFO] [stderr] Checking idna_adapter v1.2.2 [INFO] [stderr] Checking bit-set v0.5.3 [INFO] [stderr] Checking tracing-log v0.2.0 [INFO] [stderr] Checking enum-map v2.7.3 [INFO] [stderr] Checking petgraph v0.6.5 [INFO] [stderr] Checking csv v1.4.0 [INFO] [stderr] Checking idna v1.1.0 [INFO] [stderr] Checking flate2 v1.1.9 [INFO] [stderr] Checking bv v0.11.1 [INFO] [stderr] Checking serde_json v1.0.149 [INFO] [stderr] Checking url v2.5.8 [INFO] [stderr] Checking multimap v0.9.1 [INFO] [stderr] Checking tracing-serde v0.2.0 [INFO] [stderr] Checking vec_map v0.8.2 [INFO] [stderr] Checking matchers v0.2.0 [INFO] [stderr] Compiling multiversion-macros v0.7.4 [INFO] [stderr] Compiling nalgebra-macros v0.1.0 [INFO] [stderr] Compiling derive-new v0.5.9 [INFO] [stderr] Checking time v0.3.47 [INFO] [stderr] Checking ndarray v0.15.6 [INFO] [stderr] Checking bio-types v1.0.4 [INFO] [stderr] Compiling clap_derive v4.6.1 [INFO] [stderr] Checking atomic v0.6.1 [INFO] [stderr] Checking console v0.15.11 [INFO] [stderr] Checking ordered-float v3.9.2 [INFO] [stderr] Checking itertools-num v0.1.3 [INFO] [stderr] Checking itertools v0.11.0 [INFO] [stderr] Checking crossbeam-channel v0.5.15 [INFO] [stderr] Checking triple_accel v0.4.0 [INFO] [stderr] Checking editdistancek v1.0.2 [INFO] [stderr] Checking tracing v0.1.44 [INFO] [stderr] Checking linear-map v1.2.0 [INFO] [stderr] Checking strum v0.25.0 [INFO] [stderr] Checking ieee754 v0.2.6 [INFO] [stderr] Checking bytecount v0.6.9 [INFO] [stderr] Checking uuid v1.23.1 [INFO] [stderr] Checking bam v0.1.4 [INFO] [stderr] Checking crossbeam v0.8.4 [INFO] [stderr] Checking indicatif v0.17.11 [INFO] [stderr] Checking num_cpus v1.17.0 [INFO] [stderr] Checking multiversion v0.7.4 [INFO] [stderr] Checking tracing-subscriber v0.3.23 [INFO] [stderr] Checking clap v4.6.1 [INFO] [stderr] Checking nalgebra v0.29.0 [INFO] [stderr] Compiling hts-sys v2.2.0 [INFO] [stderr] Checking polars-row v0.36.2 [INFO] [stderr] Checking statrs v0.16.1 [INFO] [stderr] Checking bio v1.6.0 [INFO] [stderr] Checking polars-time v0.36.2 [INFO] [stderr] Checking polars-io v0.36.2 [INFO] [stderr] Checking rust-htslib v0.47.1 [INFO] [stderr] Documenting bam_stat v0.1.3 (/opt/rustwide/workdir) [INFO] [stderr] Finished `dev` profile [unoptimized + debuginfo] target(s) in 49.38s [INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: polars-lazy v0.36.2 [INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 6` [INFO] [stderr] Generated /opt/rustwide/target/doc/bam_stat/index.html [INFO] running `Command { std: "docker" "inspect" "0683dbe2d15f51d3b0a61d45e7fc417811c030e8ea5998db7838e14ef0354a95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "0683dbe2d15f51d3b0a61d45e7fc417811c030e8ea5998db7838e14ef0354a95", kill_on_drop: false }` [INFO] [stdout] 0683dbe2d15f51d3b0a61d45e7fc417811c030e8ea5998db7838e14ef0354a95