[INFO] fetching crate nucleaze 1.4.2...
[INFO] testing nucleaze-1.4.2 against 1.99.0-beta.1+cargoflags=--release for beta-release-1.99-2
[INFO] extracting crate nucleaze 1.4.2 into /workspace/builds/worker-0-tc2/source
[INFO] started tweaking crates.io crate nucleaze 1.4.2
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate nucleaze 1.4.2
[INFO] tweaked toml for crates.io crate nucleaze 1.4.2 written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate nucleaze 1.4.2 on toolchain 1.99.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate nucleaze 1.4.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 6a23c6cc0457bf619ccd4e70115929801d4c958cc8ee241ab5c47d548341c320
[INFO] running `Command { std: "docker" "start" "6a23c6cc0457bf619ccd4e70115929801d4c958cc8ee241ab5c47d548341c320", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6a23c6cc0457bf619ccd4e70115929801d4c958cc8ee241ab5c47d548341c320", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6a23c6cc0457bf619ccd4e70115929801d4c958cc8ee241ab5c47d548341c320" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6a23c6cc0457bf619ccd4e70115929801d4c958cc8ee241ab5c47d548341c320", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6a23c6cc0457bf619ccd4e70115929801d4c958cc8ee241ab5c47d548341c320" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.1" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.180
[INFO] [stderr]    Compiling find-msvc-tools v0.1.3
[INFO] [stderr]    Compiling shlex v1.3.0
[INFO] [stderr]    Compiling memchr v2.7.6
[INFO] [stderr]    Compiling cfg-if v1.0.3
[INFO] [stderr]    Compiling proc-macro2 v1.0.101
[INFO] [stderr]    Compiling getrandom v0.3.3
[INFO] [stderr]    Compiling unicode-ident v1.0.19
[INFO] [stderr]    Compiling anstyle v1.0.13
[INFO] [stderr]    Compiling quote v1.0.41
[INFO] [stderr]    Compiling regex-syntax v0.8.6
[INFO] [stderr]    Compiling zerocopy v0.8.27
[INFO] [stderr]    Compiling zstd-safe v7.2.4
[INFO] [stderr]    Compiling anstyle-parse v0.2.7
[INFO] [stderr]    Compiling anstyle-query v1.1.4
[INFO] [stderr]    Compiling rustix v1.1.3
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.1
[INFO] [stderr]    Compiling predicates-core v1.0.9
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling anstream v0.6.21
[INFO] [stderr]    Compiling syn v2.0.106
[INFO] [stderr]    Compiling jobserver v0.1.34
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling float-cmp v0.10.0
[INFO] [stderr]    Compiling cc v1.2.40
[INFO] [stderr]    Compiling rand_core v0.9.3
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]    Compiling virtue v0.0.18
[INFO] [stderr]    Compiling clap_lex v0.7.5
[INFO] [stderr]    Compiling bitflags v2.9.4
[INFO] [stderr]    Compiling regex-automata v0.4.11
[INFO] [stderr]    Compiling assert_cmd v2.1.2
[INFO] [stderr]    Compiling rlimit v0.10.2
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling linux-raw-sys v0.11.0
[INFO] [stderr]    Compiling termtree v0.5.1
[INFO] [stderr]    Compiling normalize-line-endings v0.3.0
[INFO] [stderr]    Compiling difflib v0.4.0
[INFO] [stderr]    Compiling zstd-sys v2.0.16+zstd.1.5.7
[INFO] [stderr]    Compiling liblzma-sys v0.3.13
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]    Compiling liblzma v0.3.6
[INFO] [stderr]    Compiling predicates-tree v1.0.12
[INFO] [stderr]    Compiling rand_chacha v0.9.0
[INFO] [stderr]    Compiling bincode_derive v2.0.1
[INFO] [stderr]    Compiling clap_builder v4.5.54
[INFO] [stderr]    Compiling clap_derive v4.5.49
[INFO] [stderr]    Compiling regex v1.11.3
[INFO] [stderr]    Compiling predicates v3.1.3
[INFO] [stderr]    Compiling bstr v1.12.1
[INFO] [stderr]    Compiling flate2 v1.1.2
[INFO] [stderr]    Compiling wait-timeout v0.2.1
[INFO] [stderr]    Compiling buffer-redux v1.0.2
[INFO] [stderr]    Compiling crossbeam-queue v0.3.12
[INFO] [stderr]    Compiling crossbeam-channel v0.5.15
[INFO] [stderr]    Compiling unty v0.0.4
[INFO] [stderr]    Compiling fastrand v2.3.0
[INFO] [stderr]    Compiling bytecount v0.6.9
[INFO] [stderr]    Compiling once_cell v1.21.3
[INFO] [stderr]    Compiling tempfile v3.24.0
[INFO] [stderr]    Compiling crossbeam v0.8.4
[INFO] [stderr]    Compiling bincode v2.0.1
[INFO] [stderr]    Compiling rayon v1.11.0
[INFO] [stderr]    Compiling clap v4.5.54
[INFO] [stderr]    Compiling rand v0.9.2
[INFO] [stderr]    Compiling num_cpus v1.17.0
[INFO] [stderr]    Compiling sysinfo v0.38.0
[INFO] [stderr]    Compiling rustc-hash v2.1.1
[INFO] [stderr]    Compiling zstd v0.13.3
[INFO] [stderr]    Compiling needletail v0.6.3
[INFO] [stderr]    Compiling nucleaze v1.4.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 24.61s
[INFO] running `Command { std: "docker" "inspect" "6a23c6cc0457bf619ccd4e70115929801d4c958cc8ee241ab5c47d548341c320", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6a23c6cc0457bf619ccd4e70115929801d4c958cc8ee241ab5c47d548341c320" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.1" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling nucleaze v1.4.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 0.97s
[INFO] running `Command { std: "docker" "inspect" "6a23c6cc0457bf619ccd4e70115929801d4c958cc8ee241ab5c47d548341c320", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6a23c6cc0457bf619ccd4e70115929801d4c958cc8ee241ab5c47d548341c320" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.1" "test" "--frozen" "--release", kill_on_drop: false }`
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 0.05s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/release/deps/nucleaze-e2a06a02322c2383)
[INFO] [stdout] 
[INFO] [stdout] running 33 tests
[INFO] [stdout] test kmer_ops::tests::test_bit_cap_calculation ... ok
[INFO] [stdout] test kmer_ops::tests::test_canonical_encoding_behavior ... ok
[INFO] [stdout] test kmer_ops::tests::test_empty_reference_set ... ok
[INFO] [stdout] test kmer_ops::tests::test_encode_longer_sequence ... ok
[INFO] [stdout] test kmer_ops::tests::test_encode_multiple_bases ... ok
[INFO] [stdout] test kmer_ops::tests::test_encoding_bit_length ... ok
[INFO] [stdout] test kmer_ops::tests::test_encode_single_base ... ok
[INFO] [stdout] test kmer_ops::tests::test_encoding_consistency ... ok
[INFO] [stdout] test kmer_ops::tests::test_kmer_processor_normal_vars ... ok
[INFO] [stdout] test kmer_ops::tests::test_kmer_processor_diff_vars ... ok
[INFO] [stdout] test kmer_ops::tests::test_duplicate_kmers ... ok
[INFO] [stdout] test kmer_ops::tests::test_kmer_rolling_hash ... ok
[INFO] [stdout] test kmer_ops::tests::test_palindromic_sequences ... ok
[INFO] [stdout] test kmer_ops::tests::test_minimum_k_value ... ok
[INFO] [stdout] test kmer_ops::tests::test_canonical ... ok
[INFO] [stdout] test kmer_ops::tests::test_process_read_meets_threshold ... ok
[INFO] [stdout] test kmer_ops::tests::test_large_reference_set ... ok
[INFO] [stdout] test kmer_ops::tests::test_process_multiple ... ok
[INFO] [stdout] test kmer_ops::tests::test_long_sequence_processing ... ok
[INFO] [stdout] test kmer_ops::tests::test_process_read_no_match ... ok
[INFO] [stdout] test kmer_ops::tests::test_process_read_exact_match ... ok
[INFO] [stdout] test kmer_ops::tests::test_process_read_too_short ... ok
[INFO] [stdout] test kmer_ops::tests::test_rc_refs ... ok
[INFO] [stdout] test kmer_ops::tests::test_process_read_partial_match_below_threshold ... ok
[INFO] [stdout] test kmer_ops::tests::test_sequence_length_k ... ok
[INFO] [stdout] test kmer_ops::tests::test_sequence_length_k_plus_one ... ok
[INFO] [stdout] test kmer_ops::tests::test_repeated_bases ... ok
[INFO] [stdout] test kmer_ops::tests::test_single_sequence ... ok
[INFO] [stdout] test kmer_ops::tests::test_sequence_exactly_k_length ... ok
[INFO] [stdout] test kmer_ops::tests::test_threshold_one ... ok
[INFO] [stdout] test kmer_ops::tests::test_threshold_higher ... ok
[INFO] [stdout] test kmer_ops::tests::test_multiple_k ... ok
[INFO] [stdout] test kmer_ops::tests::test_various_thresholds ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 33 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/release/deps/nucleaze-5f266e5970625425)
[INFO] [stdout] 
[INFO] [stdout] running 33 tests
[INFO] [stdout] test kmer_ops::tests::test_canonical_encoding_behavior ... ok
[INFO] [stdout] test kmer_ops::tests::test_bit_cap_calculation ... ok
[INFO] [stdout] test kmer_ops::tests::test_empty_reference_set ... ok
[INFO] [stdout] test kmer_ops::tests::test_encode_longer_sequence ... ok
[INFO] [stdout] test kmer_ops::tests::test_encode_multiple_bases ... ok
[INFO] [stdout] test kmer_ops::tests::test_encode_single_base ... ok
[INFO] [stdout] test kmer_ops::tests::test_encoding_bit_length ... ok
[INFO] [stdout] test kmer_ops::tests::test_encoding_consistency ... ok
[INFO] [stdout] test kmer_ops::tests::test_canonical ... ok
[INFO] [stdout] test kmer_ops::tests::test_duplicate_kmers ... ok
[INFO] [stdout] test kmer_ops::tests::test_kmer_processor_normal_vars ... ok
[INFO] [stdout] test kmer_ops::tests::test_kmer_processor_diff_vars ... ok
[INFO] [stdout] test kmer_ops::tests::test_kmer_rolling_hash ... ok
[INFO] [stdout] test kmer_ops::tests::test_large_reference_set ... ok
[INFO] [stdout] test kmer_ops::tests::test_minimum_k_value ... ok
[INFO] [stdout] test kmer_ops::tests::test_palindromic_sequences ... ok
[INFO] [stdout] test kmer_ops::tests::test_long_sequence_processing ... ok
[INFO] [stdout] test kmer_ops::tests::test_process_multiple ... ok
[INFO] [stdout] test kmer_ops::tests::test_process_read_exact_match ... ok
[INFO] [stdout] test kmer_ops::tests::test_process_read_meets_threshold ... ok
[INFO] [stdout] test kmer_ops::tests::test_process_read_no_match ... ok
[INFO] [stdout] test kmer_ops::tests::test_process_read_partial_match_below_threshold ... ok
[INFO] [stdout] test kmer_ops::tests::test_process_read_too_short ... ok
[INFO] [stdout] test kmer_ops::tests::test_rc_refs ... ok
[INFO] [stdout] test kmer_ops::tests::test_multiple_k ... ok
[INFO] [stdout] test kmer_ops::tests::test_repeated_bases ... ok
[INFO] [stdout] test kmer_ops::tests::test_sequence_exactly_k_length ... ok
[INFO] [stdout] test kmer_ops::tests::test_sequence_length_k_plus_one ... ok
[INFO] [stdout] test kmer_ops::tests::test_sequence_length_k ... ok
[INFO] [stdout] test kmer_ops::tests::test_single_sequence ... ok
[INFO] [stdout] test kmer_ops::tests::test_threshold_higher ... ok
[INFO] [stdout] test kmer_ops::tests::test_threshold_one ... ok
[INFO] [stdout] test kmer_ops::tests::test_various_thresholds ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 33 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/integrations.rs (/opt/rustwide/target/release/deps/integrations-6390f0f89ddcdfde)
[INFO] [stdout] 
[INFO] [stdout] running 23 tests
[INFO] [stdout] test test_duplicate_read_files ... ok
[INFO] [stdout] test test_duplicate_file_args_error ... ok
[INFO] [stdout] test test_filtering_ambiguous_sequences ... ok
[INFO] [stdout] test test_inter_in_paired_out ... ok
[INFO] [stdout] test test_basic_filtering_unpaired ... ok
[INFO] [stdout] test test_inter_in_paired_out_no_flag ... ok
[INFO] [stdout] test test_fasta_output_format ... ok
[INFO] [stdout] test test_canonical_kmers ... ok
[INFO] [stdout] test test_interleaved ... ok
[INFO] [stdout] test test_interleaved_input_separate_output ... ok
[INFO] [stdout] test test_missing_required_args ... ok
[INFO] [stdout] test test_memory_allocation_limits ... ok
[INFO] [stdout] test test_metadata_kmer_functional ... ok
[INFO] [stdout] test test_missing_interleaved_flag_failure ... ok
[INFO] [stdout] test test_paired_in_inter_out ... ok
[INFO] [stdout] test test_different_k_values ... ok
[INFO] [stdout] test test_ref_with_short_seqs_errors ... ok
[INFO] [stdout] test test_minhits_threshold ... ok
[INFO] [stdout] test test_paired_input_files ... ok
[INFO] [stdout] test test_threads_argument ... ok
[INFO] [stdout] test test_serialized_reference ... ok
[INFO] [stdout] test test_serialized_reference_persistence ... ok
[INFO] [stdout] test test_stdin_input ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 23 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests nucleaze
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "6a23c6cc0457bf619ccd4e70115929801d4c958cc8ee241ab5c47d548341c320", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6a23c6cc0457bf619ccd4e70115929801d4c958cc8ee241ab5c47d548341c320", kill_on_drop: false }`
[INFO] [stdout] 6a23c6cc0457bf619ccd4e70115929801d4c958cc8ee241ab5c47d548341c320
