[INFO] cloning repository https://github.com/justicengom/PhyloDM
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/justicengom/PhyloDM" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjusticengom%2FPhyloDM", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjusticengom%2FPhyloDM'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] bcfa88291910954e116ff5ed437644c671e96db9
[INFO] testing justicengom/PhyloDM against 1.98.0-beta.8+cargoflags=--release for beta-release-1.99-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fjusticengom%2FPhyloDM" "/workspace/builds/worker-5-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc1/source'...
[INFO] [stderr] done.
[INFO] removed /workspace/builds/worker-5-tc1/source/.cargo/config
[INFO] started tweaking git repo https://github.com/justicengom/PhyloDM
[INFO] finished tweaking git repo https://github.com/justicengom/PhyloDM
[INFO] tweaked toml for git repo https://github.com/justicengom/PhyloDM written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/justicengom/PhyloDM on toolchain 1.98.0-beta.8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.98.0-beta.8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/justicengom/PhyloDM already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.98.0-beta.8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded unindent v0.1.10
[INFO] [stderr]   Downloaded pyo3-macros v0.17.2
[INFO] [stderr]   Downloaded unicode-ident v1.0.4
[INFO] [stderr]   Downloaded random_color v0.5.1
[INFO] [stderr]   Downloaded memoffset v0.6.5
[INFO] [stderr]   Downloaded smallvec v1.10.0
[INFO] [stderr]   Downloaded rand_pcg v0.2.1
[INFO] [stderr]   Downloaded either v1.8.0
[INFO] [stderr]   Downloaded getopt v1.1.3
[INFO] [stderr]   Downloaded indoc v1.0.7
[INFO] [stderr]   Downloaded num-integer v0.1.45
[INFO] [stderr]   Downloaded parking_lot_core v0.9.3
[INFO] [stderr]   Downloaded xmlparser v0.13.3
[INFO] [stderr]   Downloaded ppv-lite86 v0.2.16
[INFO] [stderr]   Downloaded semver v1.0.14
[INFO] [stderr]   Downloaded num-complex v0.4.2
[INFO] [stderr]   Downloaded svg v0.8.2
[INFO] [stderr]   Downloaded structopt-derive v0.4.18
[INFO] [stderr]   Downloaded pyo3-build-config v0.17.2
[INFO] [stderr]   Downloaded termcolor v1.1.3
[INFO] [stderr]   Downloaded target-lexicon v0.12.4
[INFO] [stderr]   Downloaded quote v1.0.21
[INFO] [stderr]   Downloaded once_cell v1.15.0
[INFO] [stderr]   Downloaded getrandom v0.2.7
[INFO] [stderr]   Downloaded ahash v0.7.6
[INFO] [stderr]   Downloaded lock_api v0.4.9
[INFO] [stderr]   Downloaded pyo3-ffi v0.17.2
[INFO] [stderr]   Downloaded matrixmultiply v0.3.2
[INFO] [stderr]   Downloaded roxmltree v0.14.1
[INFO] [stderr]   Downloaded derive_more v0.99.17
[INFO] [stderr]   Downloaded proc-macro2 v1.0.46
[INFO] [stderr]   Downloaded numpy v0.17.2
[INFO] [stderr]   Downloaded num-traits v0.2.15
[INFO] [stderr]   Downloaded structopt v0.3.26
[INFO] [stderr]   Downloaded pyo3-macros-backend v0.17.2
[INFO] [stderr]   Downloaded unicode-segmentation v1.10.0
[INFO] [stderr]   Downloaded aho-corasick v0.7.19
[INFO] [stderr]   Downloaded syn v1.0.101
[INFO] [stderr]   Downloaded regex v1.6.0
[INFO] [stderr]   Downloaded ndarray v0.15.6
[INFO] [stderr]   Downloaded regex-syntax v0.6.27
[INFO] [stderr]   Downloaded pyo3 v0.17.2
[INFO] [stderr]   Downloaded light_phylogeny v2.1.2
[INFO] [stderr]   Downloaded libc v0.2.134
[INFO] [stderr]   Downloaded windows_x86_64_msvc v0.36.1
[INFO] [stderr]   Downloaded windows_i686_msvc v0.36.1
[INFO] [stderr]   Downloaded windows_aarch64_msvc v0.36.1
[INFO] [stderr]   Downloaded windows_i686_gnu v0.36.1
[INFO] [stderr]   Downloaded windows_x86_64_gnu v0.36.1
[INFO] [stderr]   Downloaded windows-sys v0.36.1
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] c22b6fe876681e766e97692b730127fe9d7921fc898cd1b8fd4a2350de29570d
[INFO] running `Command { std: "docker" "start" "c22b6fe876681e766e97692b730127fe9d7921fc898cd1b8fd4a2350de29570d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c22b6fe876681e766e97692b730127fe9d7921fc898cd1b8fd4a2350de29570d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "c22b6fe876681e766e97692b730127fe9d7921fc898cd1b8fd4a2350de29570d" "/opt/rustwide/cargo-home/bin/cargo" "+1.98.0-beta.8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "c22b6fe876681e766e97692b730127fe9d7921fc898cd1b8fd4a2350de29570d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "c22b6fe876681e766e97692b730127fe9d7921fc898cd1b8fd4a2350de29570d" "/opt/rustwide/cargo-home/bin/cargo" "+1.98.0-beta.8" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.134
[INFO] [stderr]    Compiling proc-macro2 v1.0.46
[INFO] [stderr]    Compiling quote v1.0.21
[INFO] [stderr]    Compiling unicode-ident v1.0.4
[INFO] [stderr]    Compiling autocfg v1.1.0
[INFO] [stderr]    Compiling syn v1.0.101
[INFO] [stderr]    Compiling memchr v2.5.0
[INFO] [stderr]    Compiling unicode-segmentation v1.10.0
[INFO] [stderr]    Compiling unicode-width v0.1.10
[INFO] [stderr]    Compiling log v0.4.17
[INFO] [stderr]    Compiling ppv-lite86 v0.2.16
[INFO] [stderr]    Compiling bitflags v1.3.2
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling proc-macro-error v1.0.4
[INFO] [stderr]    Compiling regex-syntax v0.6.27
[INFO] [stderr]    Compiling strsim v0.8.0
[INFO] [stderr]    Compiling ansi_term v0.12.1
[INFO] [stderr]    Compiling textwrap v0.11.0
[INFO] [stderr]    Compiling humantime v2.1.0
[INFO] [stderr]    Compiling lazy_static v1.4.0
[INFO] [stderr]    Compiling termcolor v1.1.3
[INFO] [stderr]    Compiling xmlparser v0.13.3
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling convert_case v0.4.0
[INFO] [stderr]    Compiling matrixmultiply v0.3.2
[INFO] [stderr]    Compiling num-traits v0.2.15
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling num-integer v0.1.45
[INFO] [stderr]    Compiling svg v0.8.2
[INFO] [stderr]    Compiling either v1.8.0
[INFO] [stderr]    Compiling getopt v1.1.3
[INFO] [stderr]    Compiling roxmltree v0.14.1
[INFO] [stderr]    Compiling itertools v0.10.5
[INFO] [stderr]    Compiling getrandom v0.1.16
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling aho-corasick v0.7.19
[INFO] [stderr]    Compiling clap v2.34.0
[INFO] [stderr]    Compiling rand_core v0.5.1
[INFO] [stderr]    Compiling proc-macro-error-attr v1.0.4
[INFO] [stderr]    Compiling rand_chacha v0.2.2
[INFO] [stderr]    Compiling rand_pcg v0.2.1
[INFO] [stderr]    Compiling rand v0.7.3
[INFO] [stderr]    Compiling num-complex v0.4.2
[INFO] [stderr]    Compiling ndarray v0.15.6
[INFO] [stderr]    Compiling regex v1.6.0
[INFO] [stderr]    Compiling random_color v0.5.1
[INFO] [stderr]    Compiling env_logger v0.8.4
[INFO] [stderr]    Compiling structopt-derive v0.4.18
[INFO] [stderr]    Compiling derive_more v0.99.17
[INFO] [stderr]    Compiling structopt v0.3.26
[INFO] [stderr]    Compiling light_phylogeny v2.1.2
[INFO] [stderr]    Compiling phylodm v2.1.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 46.42s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: svg v0.8.2
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "c22b6fe876681e766e97692b730127fe9d7921fc898cd1b8fd4a2350de29570d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "c22b6fe876681e766e97692b730127fe9d7921fc898cd1b8fd4a2350de29570d" "/opt/rustwide/cargo-home/bin/cargo" "+1.98.0-beta.8" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling phylodm v2.1.3 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 1.48s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: svg v0.8.2
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] running `Command { std: "docker" "inspect" "c22b6fe876681e766e97692b730127fe9d7921fc898cd1b8fd4a2350de29570d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "c22b6fe876681e766e97692b730127fe9d7921fc898cd1b8fd4a2350de29570d" "/opt/rustwide/cargo-home/bin/cargo" "+1.98.0-beta.8" "test" "--frozen" "--release", kill_on_drop: false }`
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 0.10s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: svg v0.8.2
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 1`
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/release/deps/phylodm-38c2420b3459b734)
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test util::test_create_row_vec_from_mat_dims ... ok
[INFO] [stdout] test util::test_row_vec_to_symmat ... ok
[INFO] [stdout] test util::test_mat_size_from_row_vec_size ... ok
[INFO] [stdout] test util::test_row_idx_from_mat_coords ... ok
[INFO] [stdout] test util::test_row_vec_size_from_mat_size ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 5 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/release/deps/phylodm-7e3d32616f410e80)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/tree.rs (/opt/rustwide/target/release/deps/tree-3e1edcea21e20b94)
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stdout] test tests::test_tree_dm_twice ... ok
[INFO] [stdout] test tests::test_tree_norm ... ok
[INFO] [stdout] test tests::test_tree ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/util.rs (/opt/rustwide/target/release/deps/util-f2dd68c15772fa40)
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test test_integration ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 1 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests phylodm
[INFO] [stdout] 
[INFO] [stdout] running 10 tests
[INFO] [stdout] test src/tree/types.rs - tree::types::NodeDepth (line 32) ... ok
[INFO] [stdout] test src/util.rs - util::row_vec_size_from_mat_size (line 50) ... ok
[INFO] [stdout] test src/util.rs - util::row_vec_to_symmat (line 129) ... ok
[INFO] [stdout] test src/util.rs - util::row_idx_from_mat_coords (line 13) ... ok
[INFO] [stdout] test src/tree/types.rs - tree::types::Edge (line 21) ... ok
[INFO] [stdout] test src/util.rs - util::mat_size_from_row_vec_size (line 104) ... ok
[INFO] [stdout] test src/pdm.rs - pdm::PDM (line 16) ... ok
[INFO] [stdout] test src/tree/types.rs - tree::types::NodeId (line 10) ... ok
[INFO] [stdout] test src/tree/types.rs - tree::types::Taxon (line 43) ... ok
[INFO] [stdout] test src/util.rs - util::create_row_vec_from_mat_dims (line 77) ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 10 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.83s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "c22b6fe876681e766e97692b730127fe9d7921fc898cd1b8fd4a2350de29570d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "c22b6fe876681e766e97692b730127fe9d7921fc898cd1b8fd4a2350de29570d", kill_on_drop: false }`
[INFO] [stdout] c22b6fe876681e766e97692b730127fe9d7921fc898cd1b8fd4a2350de29570d
