[INFO] cloning repository https://github.com/earth-metabolome-initiative/spectral-matcher
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/earth-metabolome-initiative/spectral-matcher" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fearth-metabolome-initiative%2Fspectral-matcher", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fearth-metabolome-initiative%2Fspectral-matcher'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 5a50d623c68543daf79cc4125d482a27308f9017
[INFO] testing earth-metabolome-initiative/spectral-matcher against 1.99.0-beta.1+cargoflags=--release for beta-release-1.99-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fearth-metabolome-initiative%2Fspectral-matcher" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/earth-metabolome-initiative/spectral-matcher
[INFO] finished tweaking git repo https://github.com/earth-metabolome-initiative/spectral-matcher
[INFO] tweaked toml for git repo https://github.com/earth-metabolome-initiative/spectral-matcher written to /workspace/builds/worker-6-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/earth-metabolome-initiative/spectral-matcher on toolchain 1.99.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/earth-metabolome-initiative/spectral-matcher already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:8683fc1fc2eb5c9ac98e0d076ab094b2ffac7f99da555d2b6a2e27f346de2ec7" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] f22976174346f4204825621911d8244568ef7cb77ba9276846814e2475829517
[INFO] running `Command { std: "docker" "start" "f22976174346f4204825621911d8244568ef7cb77ba9276846814e2475829517", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f22976174346f4204825621911d8244568ef7cb77ba9276846814e2475829517", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "f22976174346f4204825621911d8244568ef7cb77ba9276846814e2475829517" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "f22976174346f4204825621911d8244568ef7cb77ba9276846814e2475829517", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "f22976174346f4204825621911d8244568ef7cb77ba9276846814e2475829517" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.1" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.184
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[INFO] [stderr]    Compiling wasm-bindgen v0.2.117
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[INFO] [stderr]    Compiling portable-atomic v1.13.1
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[INFO] [stderr]    Compiling rand v0.10.1
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[INFO] [stderr]    Compiling toml_write v0.1.2
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[INFO] [stderr]    Compiling tinystr v0.8.3
[INFO] [stderr]    Compiling icu_locale_core v2.2.0
[INFO] [stderr]    Compiling potential_utf v0.1.5
[INFO] [stderr]    Compiling icu_collections v2.2.0
[INFO] [stderr]    Compiling wasm-bindgen-macro v0.2.117
[INFO] [stderr]    Compiling hyper-util v0.1.20
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling icu_provider v2.2.0
[INFO] [stderr]    Compiling icu_normalizer v2.2.0
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[INFO] [stderr]    Compiling js-sys v0.3.94
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[INFO] [stderr]    Compiling sha2 v0.10.9
[INFO] [stderr]    Compiling console v0.15.11
[INFO] [stderr]    Compiling geometric-traits v0.1.0 (https://github.com/earth-metabolome-initiative/geometric-traits#23000558)
[INFO] [stderr]    Compiling idna_adapter v1.2.1
[INFO] [stderr]    Compiling idna v1.1.0
[INFO] [stderr]    Compiling url v2.5.8
[INFO] [stderr]    Compiling rustls-webpki v0.103.10
[INFO] [stderr]    Compiling tower-http v0.6.8
[INFO] [stderr]    Compiling toml_edit v0.22.27
[INFO] [stderr]    Compiling half v2.7.1
[INFO] [stderr]    Compiling serde_urlencoded v0.7.1
[INFO] [stderr]    Compiling document-features v0.2.12
[INFO] [stderr]    Compiling serde_json v1.0.149
[INFO] [stderr]    Compiling csv-core v0.1.13
[INFO] [stderr]    Compiling number_prefix v0.4.0
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[INFO] [stderr]    Compiling csv v1.4.0
[INFO] [stderr]    Compiling indicatif v0.17.11
[INFO] [stderr]    Compiling toml v0.8.23
[INFO] [stderr]    Compiling wasm-bindgen-futures v0.4.67
[INFO] [stderr]    Compiling poll-promise v0.3.0
[INFO] [stderr]    Compiling tokio-rustls v0.26.4
[INFO] [stderr]    Compiling hyper-rustls v0.27.7
[INFO] [stderr]    Compiling reqwest v0.12.28
[INFO] [stderr]    Compiling mass_spectrometry v0.1.0 (https://github.com/earth-metabolome-initiative/mass-spectrometry-traits#36010634)
[INFO] [stderr]    Compiling spectral-matcher v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 4m 14s
[INFO] running `Command { std: "docker" "inspect" "f22976174346f4204825621911d8244568ef7cb77ba9276846814e2475829517", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "f22976174346f4204825621911d8244568ef7cb77ba9276846814e2475829517" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.1" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling spectral-matcher v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 33.68s
[INFO] running `Command { std: "docker" "inspect" "f22976174346f4204825621911d8244568ef7cb77ba9276846814e2475829517", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "f22976174346f4204825621911d8244568ef7cb77ba9276846814e2475829517" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.1" "test" "--frozen" "--release", kill_on_drop: false }`
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 0.22s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/release/deps/spectral_matcher-5bca903e24229b4d)
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/release/deps/spectral_matcher-9c2387d2fdeffd57)
[INFO] [stdout] running 31 tests
[INFO] [stderr]      Running tests/api.rs (/opt/rustwide/target/release/deps/api-b51c05831dba0db1)
[INFO] [stdout] test consensus::tests::cross_library_consensus_can_beat_singleton_top_hit ... ok
[INFO] [stdout] test consensus::tests::duplicate_hits_in_one_library_are_collapsed_before_scoring ... ok
[INFO] [stdout] test consensus::tests::out_of_window_consensus_does_not_override_singleton ... ok
[INFO] [stdout] test consensus::tests::singleton_is_retained_when_only_one_library_supports_query ... ok
[INFO] [stdout] test export::tests::search_json_exports_rows ... ok
[INFO] [stdout] test databases::tests::resolve_database_accepts_id_name_and_filename ... ok
[INFO] [stdout] test export::tests::search_tsv_includes_taxonomy_columns_when_reranking_is_applied ... ok
[INFO] [stdout] test export::tests::search_tsv_exports_one_row_per_hit_with_dynamic_headers ... ok
[INFO] [stdout] test network::tests::selected_neighbor_build_matches_pair_score_build ... ok
[INFO] [stdout] test network::tests::threshold_and_topk_with_or_rule_keeps_expected_edges ... ok
[INFO] [stdout] test mgf::tests::keeps_fixed_fields_alongside_headers ... ok
[INFO] [stdout] test mgf::tests::preserves_arbitrary_headers_with_normalized_keys ... ok
[INFO] [stdout] test mgf::tests::rejects_duplicate_spectrum_ids ... ok
[INFO] [stdout] test search::tests::indexed_network_neighbors_match_scalar_linear_cosine ... ok
[INFO] [stdout] test search::tests::run_search_request_accepts_genus_level_taxonomic_queries ... ok
[INFO] [stdout] test search::tests::incremental_search_applies_filters_and_top_n ... ok
[INFO] [stdout] test search::tests::native_search_matches_incremental_result_shape ... ok
[INFO] [stdout] test search::tests::run_search_request_applies_taxonomic_reranking_before_final_top_n ... ok
[INFO] [stdout] test search::tests::search_candidate_sorting_uses_score_matches_then_library_index ... ok
[INFO] [stdout] test consensus::tests::mixed_full_structures_are_marked_as_short_inchikey_consensus ... ok
[INFO] [stdout] test search::tests::search_respects_precursor_mz_tolerance ... ok
[INFO] [stdout] test server::tests::raw_response_contains_content_length ... ok
[INFO] [stdout] test similarity::tests::linear_cosine_preprocessing_merges_close_peaks ... ok
[INFO] [stdout] test similarity::tests::top_n_peak_filter_keeps_most_intense_peaks_for_similarity_only ... ok
[INFO] [stdout] test taxonomy::tests::otol_validation_accepts_exact_non_synonym ... ok
[INFO] [stdout] test similarity::tests::modified_linear_cosine_preprocessing_merges_close_peaks ... ok
[INFO] [stdout] test taxonomy::tests::resolves_query_lineage_by_name_qid_and_genus ... ok
[INFO] [stdout] test taxonomy::tests::otol_validation_rejects_approximate_match ... ok
[INFO] [stdout] test taxonomy::tests::otol_validation_rejects_synonym_with_corrected_match ... ok
[INFO] [stdout] test consensus::tests::query_order_is_preserved_and_empty_queries_are_kept ... ok
[INFO] [stdout] test network::tests::component_selection_reports_largest_component ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 31 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test network_build_accepts_missing_precursor_mz_but_default_parsing_drops_it ... ok
[INFO] [stdout] test search_can_infer_missing_precursor_mz_from_highest_fragment_mz ... ok
[INFO] [stdout] test async_search_job_endpoints_work ... ok
[INFO] [stdout] test health_and_sync_network_endpoints_work ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.10s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/cli.rs (/opt/rustwide/target/release/deps/cli-68c32547a2583fae)
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test metrics_cli_lists_available_metrics ... ok
[INFO] [stdout] test db_list_cli_lists_seeded_databases ... ok
[INFO] [stdout] test consensus_cli_merges_two_search_artifacts_into_one_annotation_per_query ... ok
[INFO] [stdout] test search_cli_applies_taxonomic_reranking_when_taxonomy_config_is_present ... ok
[INFO] [stdout] test network_cli_writes_network_json_and_csvs ... ok
[INFO] [stdout] test search_cli_writes_json_and_optional_tsv ... ok
[INFO] [stderr]    Doc-tests spectral_matcher
[INFO] [stdout] test search_cli_runs_multiple_jobs ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.04s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "f22976174346f4204825621911d8244568ef7cb77ba9276846814e2475829517", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "f22976174346f4204825621911d8244568ef7cb77ba9276846814e2475829517", kill_on_drop: false }`
[INFO] [stdout] f22976174346f4204825621911d8244568ef7cb77ba9276846814e2475829517
