[INFO] cloning repository https://github.com/fulcrumgenomics/k2tools [INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/fulcrumgenomics/k2tools" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Fk2tools", kill_on_drop: false }` [INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Fk2tools'... [INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }` [INFO] [stdout] 7095261d375f31dabebe3679c96426fa2ec2fac9 [INFO] testing fulcrumgenomics/k2tools against 1.100.0-beta.1+cargoflags=--release for beta-release-1.100-3 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Fk2tools" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'... [INFO] [stderr] done. [INFO] removed /workspace/builds/worker-6-tc2/source/.cargo/config.toml [INFO] removed /workspace/builds/worker-6-tc2/source/rust-toolchain.toml [INFO] started tweaking git repo https://github.com/fulcrumgenomics/k2tools [INFO] finished tweaking git repo https://github.com/fulcrumgenomics/k2tools [INFO] tweaked toml for git repo https://github.com/fulcrumgenomics/k2tools written to /workspace/builds/worker-6-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/fulcrumgenomics/k2tools on toolchain 1.100.0-beta.1 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/fulcrumgenomics/k2tools already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: `package.homepage` is redundant with `package.repository` [INFO] [stderr] --> Cargo.toml:43:12 [INFO] [stderr] | [INFO] [stderr] 43 | homepage = "https://github.com/fulcrumgenomics/k2tools" [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] ... [INFO] [stderr] 46 | repository = "https://github.com/fulcrumgenomics/k2tools" [INFO] [stderr] | -------------------------------------------- [INFO] [stderr] | [INFO] [stderr] = note: `cargo::redundant_homepage` is set to `warn` by default [INFO] [stderr] help: consider removing `package.homepage` [INFO] [stderr] warning: `k2tools` (manifest) generated 1 warning [INFO] [stderr] Blocking waiting for file lock on package cache [ERROR] error running command: no output for 300 seconds [INFO] testing fulcrumgenomics/k2tools against 1.100.0-beta.1+cargoflags=--release for beta-release-1.100-3 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Fk2tools" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'... [INFO] [stderr] done. [INFO] removed /workspace/builds/worker-6-tc2/source/.cargo/config.toml [INFO] removed /workspace/builds/worker-6-tc2/source/rust-toolchain.toml [INFO] started tweaking git repo https://github.com/fulcrumgenomics/k2tools [INFO] finished tweaking git repo https://github.com/fulcrumgenomics/k2tools [INFO] tweaked toml for git repo https://github.com/fulcrumgenomics/k2tools written to /workspace/builds/worker-6-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/fulcrumgenomics/k2tools on toolchain 1.100.0-beta.1 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/fulcrumgenomics/k2tools already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: `package.homepage` is redundant with `package.repository` [INFO] [stderr] --> Cargo.toml:43:12 [INFO] [stderr] | [INFO] [stderr] 43 | homepage = "https://github.com/fulcrumgenomics/k2tools" [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] ... [INFO] [stderr] 46 | repository = "https://github.com/fulcrumgenomics/k2tools" [INFO] [stderr] | -------------------------------------------- [INFO] [stderr] | [INFO] [stderr] = note: `cargo::redundant_homepage` is set to `warn` by default [INFO] [stderr] help: consider removing `package.homepage` [INFO] [stderr] warning: `k2tools` (manifest) generated 1 warning [INFO] [stderr] Blocking waiting for file lock on package cache [ERROR] error running command: no output for 300 seconds [INFO] testing fulcrumgenomics/k2tools against 1.100.0-beta.1+cargoflags=--release for beta-release-1.100-3 [INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Ffulcrumgenomics%2Fk2tools" "/workspace/builds/worker-6-tc2/source", kill_on_drop: false }` [INFO] [stderr] Cloning into '/workspace/builds/worker-6-tc2/source'... [INFO] [stderr] done. [INFO] removed /workspace/builds/worker-6-tc2/source/.cargo/config.toml [INFO] removed /workspace/builds/worker-6-tc2/source/rust-toolchain.toml [INFO] started tweaking git repo https://github.com/fulcrumgenomics/k2tools [INFO] finished tweaking git repo https://github.com/fulcrumgenomics/k2tools [INFO] tweaked toml for git repo https://github.com/fulcrumgenomics/k2tools written to /workspace/builds/worker-6-tc2/source/Cargo.toml [INFO] validating manifest of git repo https://github.com/fulcrumgenomics/k2tools on toolchain 1.100.0-beta.1 [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }` [INFO] crate git repo https://github.com/fulcrumgenomics/k2tools already has a lockfile, it will not be regenerated [INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }` [INFO] [stderr] warning: `package.homepage` is redundant with `package.repository` [INFO] [stderr] --> Cargo.toml:43:12 [INFO] [stderr] | [INFO] [stderr] 43 | homepage = "https://github.com/fulcrumgenomics/k2tools" [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] ... [INFO] [stderr] 46 | repository = "https://github.com/fulcrumgenomics/k2tools" [INFO] [stderr] | -------------------------------------------- [INFO] [stderr] | [INFO] [stderr] = note: `cargo::redundant_homepage` is set to `warn` by default [INFO] [stderr] help: consider removing `package.homepage` [INFO] [stderr] warning: `k2tools` (manifest) generated 1 warning [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] [stderr] Blocking waiting for file lock on package cache [INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }` [INFO] [stdout] 7aa860559e95acd2fa30389a5c96e73038ec4b8f8439e8ab8f05af1ab54b5a95 [INFO] running `Command { std: "docker" "start" "7aa860559e95acd2fa30389a5c96e73038ec4b8f8439e8ab8f05af1ab54b5a95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7aa860559e95acd2fa30389a5c96e73038ec4b8f8439e8ab8f05af1ab54b5a95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "7aa860559e95acd2fa30389a5c96e73038ec4b8f8439e8ab8f05af1ab54b5a95" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }` [INFO] running `Command { std: "docker" "inspect" "7aa860559e95acd2fa30389a5c96e73038ec4b8f8439e8ab8f05af1ab54b5a95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "7aa860559e95acd2fa30389a5c96e73038ec4b8f8439e8ab8f05af1ab54b5a95" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }` [INFO] [stderr] warning: `package.homepage` is redundant with `package.repository` [INFO] [stderr] --> Cargo.toml:43:12 [INFO] [stderr] | [INFO] [stderr] 43 | homepage = "https://github.com/fulcrumgenomics/k2tools" [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] ... [INFO] [stderr] 46 | repository = "https://github.com/fulcrumgenomics/k2tools" [INFO] [stderr] | -------------------------------------------- [INFO] [stderr] | [INFO] [stderr] = note: `cargo::redundant_homepage` is set to `warn` by default [INFO] [stderr] help: consider removing `package.homepage` [INFO] [stderr] warning: `k2tools` (manifest) generated 1 warning [INFO] [stderr] Compiling proc-macro2 v1.0.106 [INFO] [stderr] Compiling unicode-ident v1.0.24 [INFO] [stderr] Compiling quote v1.0.45 [INFO] [stderr] Compiling memchr v2.8.0 [INFO] [stderr] Compiling find-msvc-tools v0.1.9 [INFO] [stderr] Compiling shlex v1.3.0 [INFO] [stderr] Compiling libc v0.2.183 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling cfg-if v1.0.4 [INFO] [stderr] Compiling autocfg v1.5.0 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling cc v1.2.56 [INFO] [stderr] Compiling utf8parse v0.2.2 [INFO] [stderr] Compiling scopeguard v1.2.0 [INFO] [stderr] Compiling rustix v1.1.4 [INFO] [stderr] Compiling anstyle-query v1.1.5 [INFO] [stderr] Compiling zmij v1.0.21 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.2 [INFO] [stderr] Compiling anstyle v1.0.13 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling colorchoice v1.0.4 [INFO] [stderr] Compiling syn v2.0.117 [INFO] [stderr] Compiling aho-corasick v1.1.4 [INFO] [stderr] Compiling lock_api v0.4.14 [INFO] [stderr] Compiling serde_json v1.0.149 [INFO] [stderr] Compiling crc32fast v1.5.0 [INFO] [stderr] Compiling pkg-config v0.3.32 [INFO] [stderr] Compiling linux-raw-sys v0.12.1 [INFO] [stderr] Compiling libdeflate-sys v0.7.5 [INFO] [stderr] Compiling regex-syntax v0.8.10 [INFO] [stderr] Compiling bitflags v2.11.0 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling parking_lot_core v0.9.12 [INFO] [stderr] Compiling rpmalloc-sys v0.2.3+b097fd0 [INFO] [stderr] Compiling getrandom v0.2.17 [INFO] [stderr] Compiling ordered-float v2.10.1 [INFO] [stderr] Compiling syn v3.0.6 [INFO] [stderr] Compiling anstyle-parse v1.0.0 [INFO] [stderr] Compiling lazy_static v1.5.0 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Compiling smallvec v1.15.1 [INFO] [stderr] Compiling regex-automata v0.4.14 [INFO] [stderr] Compiling thiserror v2.0.21 [INFO] [stderr] Compiling regex-automata v0.1.10 [INFO] [stderr] Compiling adler2 v2.0.1 [INFO] [stderr] Compiling iana-time-zone v0.1.65 [INFO] [stderr] Compiling itoa v1.0.17 [INFO] [stderr] Compiling simd-adler32 v0.3.8 [INFO] [stderr] Compiling miniz_oxide v0.8.9 [INFO] [stderr] Compiling chrono v0.4.44 [INFO] [stderr] Compiling thiserror-impl v2.0.21 [INFO] [stderr] Compiling anstream v1.0.0 [INFO] [stderr] Compiling serde_derive v1.0.228 [INFO] [stderr] Compiling thiserror-impl v1.0.69 [INFO] [stderr] Compiling pin-project-internal v1.1.11 [INFO] [stderr] Compiling libdeflater v0.7.5 [INFO] [stderr] Compiling regex v1.12.3 [INFO] [stderr] Compiling terminal_size v0.4.3 [INFO] [stderr] Compiling nanorand v0.7.0 [INFO] [stderr] Compiling spin v0.9.8 [INFO] [stderr] Compiling csv-core v0.1.13 [INFO] [stderr] Compiling anstyle-parse v0.2.7 [INFO] [stderr] Compiling unicase v2.9.0 [INFO] [stderr] Compiling pin-project v1.1.11 [INFO] [stderr] Compiling bytes v1.11.1 [INFO] [stderr] Compiling heck v0.5.0 [INFO] [stderr] Compiling log v0.4.29 [INFO] [stderr] Compiling futures-core v0.3.32 [INFO] [stderr] Compiling strsim v0.11.1 [INFO] [stderr] Compiling zlib-rs v0.6.3 [INFO] [stderr] Compiling anyhow v1.0.102 [INFO] [stderr] Compiling built v0.8.0 [INFO] [stderr] Compiling futures-sink v0.3.32 [INFO] [stderr] Compiling clap_lex v1.1.0 [INFO] [stderr] Compiling itoa v0.4.8 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling unicode-width v0.2.2 [INFO] [stderr] Compiling ryu v1.0.23 [INFO] [stderr] Compiling k2tools v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Compiling bgzf v0.2.0 [INFO] [stderr] Compiling clap_builder v4.6.0 [INFO] [stderr] Compiling flume v0.10.14 [INFO] [stderr] Compiling env_filter v1.0.0 [INFO] [stderr] Compiling clap_derive v4.6.0 [INFO] [stderr] Compiling anstream v0.6.21 [INFO] [stderr] Compiling parking_lot v0.12.5 [INFO] [stderr] Compiling buffer-redux v1.0.2 [INFO] [stderr] Compiling scoped_threadpool v0.1.9 [INFO] [stderr] Compiling jiff v0.2.23 [INFO] [stderr] Compiling pooled-writer v0.3.0 [INFO] [stderr] Compiling rpmalloc v0.2.2 [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling serde-value v0.7.0 [INFO] [stderr] Compiling serde-aux v4.7.0 [INFO] [stderr] Compiling seq_io v0.3.4 [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling flate2 v1.1.9 [INFO] [stderr] Compiling clap v4.6.0 [INFO] [stderr] Compiling fgoxide v0.7.0 [INFO] [stderr] Compiling env_logger v0.11.9 [INFO] [stderr] Finished `release` profile [optimized] target(s) in 1m 07s [INFO] running `Command { std: "docker" "inspect" "7aa860559e95acd2fa30389a5c96e73038ec4b8f8439e8ab8f05af1ab54b5a95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "7aa860559e95acd2fa30389a5c96e73038ec4b8f8439e8ab8f05af1ab54b5a95" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }` [INFO] [stderr] warning: `package.homepage` is redundant with `package.repository` [INFO] [stderr] --> Cargo.toml:43:12 [INFO] [stderr] | [INFO] [stderr] 43 | homepage = "https://github.com/fulcrumgenomics/k2tools" [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] ... [INFO] [stderr] 46 | repository = "https://github.com/fulcrumgenomics/k2tools" [INFO] [stderr] | -------------------------------------------- [INFO] [stderr] | [INFO] [stderr] = note: `cargo::redundant_homepage` is set to `warn` by default [INFO] [stderr] help: consider removing `package.homepage` [INFO] [stderr] warning: `k2tools` (manifest) generated 1 warning [INFO] [stderr] Compiling memchr v2.8.0 [INFO] [stderr] Compiling rustix v1.1.4 [INFO] [stderr] Compiling cfg-if v1.0.4 [INFO] [stderr] Compiling libc v0.2.183 [INFO] [stderr] Compiling serde_core v1.0.228 [INFO] [stderr] Compiling utf8parse v0.2.2 [INFO] [stderr] Compiling num-traits v0.2.19 [INFO] [stderr] Compiling is_terminal_polyfill v1.70.2 [INFO] [stderr] Compiling linux-raw-sys v0.12.1 [INFO] [stderr] Compiling bitflags v2.11.0 [INFO] [stderr] Compiling scopeguard v1.2.0 [INFO] [stderr] Compiling anstyle-query v1.1.5 [INFO] [stderr] Compiling colorchoice v1.0.4 [INFO] [stderr] Compiling anstyle v1.0.13 [INFO] [stderr] Compiling lock_api v0.4.14 [INFO] [stderr] Compiling regex-syntax v0.8.10 [INFO] [stderr] Compiling anstyle-parse v1.0.0 [INFO] [stderr] Compiling libdeflate-sys v0.7.5 [INFO] [stderr] Compiling zmij v1.0.21 [INFO] [stderr] Compiling smallvec v1.15.1 [INFO] [stderr] Compiling aho-corasick v1.1.4 [INFO] [stderr] Compiling lazy_static v1.5.0 [INFO] [stderr] Compiling adler2 v2.0.1 [INFO] [stderr] Compiling simd-adler32 v0.3.8 [INFO] [stderr] Compiling ordered-float v2.10.1 [INFO] [stderr] Compiling regex-automata v0.1.10 [INFO] [stderr] Compiling getrandom v0.2.17 [INFO] [stderr] Compiling itoa v1.0.17 [INFO] [stderr] Compiling iana-time-zone v0.1.65 [INFO] [stderr] Compiling nanorand v0.7.0 [INFO] [stderr] Compiling miniz_oxide v0.8.9 [INFO] [stderr] Compiling chrono v0.4.44 [INFO] [stderr] Compiling parking_lot_core v0.9.12 [INFO] [stderr] Compiling csv-core v0.1.13 [INFO] [stderr] Compiling libdeflater v0.7.5 [INFO] [stderr] Compiling anstream v1.0.0 [INFO] [stderr] Compiling spin v0.9.8 [INFO] [stderr] Compiling regex-automata v0.4.14 [INFO] [stderr] Compiling anstyle-parse v0.2.7 [INFO] [stderr] Compiling crc32fast v1.5.0 [INFO] [stderr] Compiling pin-project v1.1.11 [INFO] [stderr] Compiling thiserror v1.0.69 [INFO] [stderr] Compiling futures-sink v0.3.32 [INFO] [stderr] Compiling unicode-width v0.2.2 [INFO] [stderr] Compiling getrandom v0.4.2 [INFO] [stderr] Compiling serde v1.0.228 [INFO] [stderr] Compiling serde_json v1.0.149 [INFO] [stderr] Compiling terminal_size v0.4.3 [INFO] [stderr] Compiling clap_lex v1.1.0 [INFO] [stderr] Compiling bstr v0.2.17 [INFO] [stderr] Compiling serde-value v0.7.0 [INFO] [stderr] Compiling strsim v0.11.1 [INFO] [stderr] Compiling itoa v0.4.8 [INFO] [stderr] Compiling byteorder v1.5.0 [INFO] [stderr] Compiling zlib-rs v0.6.3 [INFO] [stderr] Compiling unicase v2.9.0 [INFO] [stderr] Compiling ryu v1.0.23 [INFO] [stderr] Compiling bytes v1.11.1 [INFO] [stderr] Compiling log v0.4.29 [INFO] [stderr] Compiling futures-core v0.3.32 [INFO] [stderr] Compiling csv v1.1.6 [INFO] [stderr] Compiling flume v0.10.14 [INFO] [stderr] Compiling clap_builder v4.6.0 [INFO] [stderr] Compiling serde-aux v4.7.0 [INFO] [stderr] Compiling anstream v0.6.21 [INFO] [stderr] Compiling regex v1.12.3 [INFO] [stderr] Compiling bgzf v0.2.0 [INFO] [stderr] Compiling parking_lot v0.12.5 [INFO] [stderr] Compiling rpmalloc-sys v0.2.3+b097fd0 [INFO] [stderr] Compiling buffer-redux v1.0.2 [INFO] [stderr] Compiling thiserror v2.0.21 [INFO] [stderr] Compiling crossbeam-utils v0.8.21 [INFO] [stderr] Compiling env_filter v1.0.0 [INFO] [stderr] Compiling jiff v0.2.23 [INFO] [stderr] Compiling scoped_threadpool v0.1.9 [INFO] [stderr] Compiling seq_io v0.3.4 [INFO] [stderr] Compiling pooled-writer v0.3.0 [INFO] [stderr] Compiling rpmalloc v0.2.2 [INFO] [stderr] Compiling anyhow v1.0.102 [INFO] [stderr] Compiling fastrand v2.3.0 [INFO] [stderr] Compiling clap v4.6.0 [INFO] [stderr] Compiling once_cell v1.21.4 [INFO] [stderr] Compiling tempfile v3.27.0 [INFO] [stderr] Compiling flate2 v1.1.9 [INFO] [stderr] Compiling fgoxide v0.7.0 [INFO] [stderr] Compiling k2tools v0.2.0 (/opt/rustwide/workdir) [INFO] [stderr] Compiling env_logger v0.11.9 [INFO] [stderr] Finished `release` profile [optimized] target(s) in 25.78s [INFO] running `Command { std: "docker" "inspect" "7aa860559e95acd2fa30389a5c96e73038ec4b8f8439e8ab8f05af1ab54b5a95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "7aa860559e95acd2fa30389a5c96e73038ec4b8f8439e8ab8f05af1ab54b5a95" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--release", kill_on_drop: false }` [INFO] [stderr] warning: `package.homepage` is redundant with `package.repository` [INFO] [stderr] --> Cargo.toml:43:12 [INFO] [stderr] | [INFO] [stderr] 43 | homepage = "https://github.com/fulcrumgenomics/k2tools" [INFO] [stderr] | ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^ [INFO] [stderr] ... [INFO] [stderr] 46 | repository = "https://github.com/fulcrumgenomics/k2tools" [INFO] [stderr] | -------------------------------------------- [INFO] [stderr] | [INFO] [stderr] = note: `cargo::redundant_homepage` is set to `warn` by default [INFO] [stderr] help: consider removing `package.homepage` [INFO] [stderr] warning: `k2tools` (manifest) generated 1 warning [INFO] [stderr] Finished `release` profile [optimized] target(s) in 0.07s [INFO] [stderr] Running unittests src/lib.rs (/opt/rustwide/target/release/build/k2tools/166b4a6a30a1408a/out/k2tools_lib-166b4a6a30a1408a) [INFO] [stdout] [INFO] [stdout] running 96 tests [INFO] [stdout] test commands::filter::tests::test_build_taxon_set_include_unclassified ... ok [INFO] [stdout] test commands::filter::tests::test_build_taxon_set_exact ... ok [INFO] [stdout] test commands::filter::tests::test_build_taxon_set_only_unclassified ... ok [INFO] [stdout] test commands::filter::tests::test_build_taxon_set_unknown_taxon ... ok [INFO] [stdout] test commands::filter::tests::test_build_taxon_set_with_descendants ... ok [INFO] [stdout] test commands::filter::tests::test_build_taxon_set_with_descendants_root ... ok [INFO] [stdout] test commands::filter::tests::test_exclude_of_other_taxon_leaves_unclassified_in_set ... ok [INFO] [stdout] test commands::filter::tests::test_exclude_of_taxon_not_in_set_is_noop ... ok [INFO] [stdout] test commands::filter::tests::test_exclude_of_taxon_zero_removes_unclassified ... ok [INFO] [stdout] test commands::filter::tests::test_exclude_removes_taxon_and_its_expected_count ... ok [INFO] [stdout] test commands::filter::tests::test_exclude_taxon_missing_from_report_is_ignored ... ok [INFO] [stdout] test commands::filter::tests::test_exclude_with_descendants_removes_whole_clade ... ok [INFO] [stdout] test commands::filter::tests::test_exclusion_of_all_selected_taxa_errors ... ok [INFO] [stdout] test commands::filter::tests::test_expected_count_with_descendants ... ok [INFO] [stdout] test commands::filter::tests::test_expected_count_with_unclassified ... ok [INFO] [stdout] test commands::filter::tests::test_expected_count_does_not_double_count_overlapping_clades ... ok [INFO] [stdout] test commands::filter::tests::test_is_broken_pipe_detects_broken_pipe_io_error ... ok [INFO] [stdout] test commands::filter::tests::test_is_broken_pipe_detects_broken_pipe_under_context ... ok [INFO] [stdout] test commands::filter::tests::test_is_broken_pipe_ignores_non_io_errors ... ok [INFO] [stdout] test commands::filter::tests::test_validate_args_exclude_requires_taxon_ids ... ok [INFO] [stdout] test commands::filter::tests::test_validate_args_no_taxa_or_unclassified ... ok [INFO] [stdout] test commands::filter::tests::test_expected_count_without_descendants ... ok [INFO] [stdout] test commands::filter::tests::test_is_broken_pipe_ignores_other_io_errors ... ok [INFO] [stdout] test commands::filter::tests::test_validate_args_rejects_stdout_for_both_outputs ... ok [INFO] [stdout] test commands::filter::tests::test_validate_args_allows_single_output_for_paired_input ... ok [INFO] [stdout] test commands::filter::tests::test_validate_args_rejects_two_outputs_for_single_input ... ok [INFO] [stdout] test commands::filter::tests::test_validate_read_name_match ... ok [INFO] [stdout] test commands::filter::tests::test_validate_read_name_strip_suffix_1 ... ok [INFO] [stdout] test commands::filter::tests::test_validate_read_name_strip_suffix_2 ... ok [INFO] [stdout] test commands::filter::tests::test_validate_read_name_suffix_and_comment ... ok [INFO] [stdout] test commands::report_to_tsv::tests::test_basic_field_values ... ok [INFO] [stdout] test commands::report_to_tsv::tests::test_empty_report_produces_no_rows ... ok [INFO] [stdout] test commands::report_to_tsv::tests::test_descendant_count ... ok [INFO] [stdout] test commands::report_to_tsv::tests::test_fraction_calculations ... ok [INFO] [stdout] test commands::report_to_tsv::tests::test_fractions_zero_when_no_sequences ... ok [INFO] [stdout] test commands::report_to_tsv::tests::test_level_values ... ok [INFO] [stdout] test commands::report_to_tsv::tests::test_minimizer_columns_empty_for_standard_report ... ok [INFO] [stdout] test commands::filter::tests::test_validate_read_name_with_comment ... ok [INFO] [stdout] test commands::filter::tests::test_validate_read_name_mismatch ... ok [INFO] [stdout] test commands::report_to_tsv::tests::test_parent_fields_empty_for_root_and_unclassified ... ok [INFO] [stdout] test commands::report_to_tsv::tests::test_minimizer_columns_populated_for_extended_report ... ok [INFO] [stdout] test commands::report_to_tsv::tests::test_parent_fields_populated_for_children ... ok [INFO] [stdout] test kraken_output::tests::test_empty_read_name ... ok [INFO] [stdout] test kraken_output::tests::test_invalid_status ... ok [INFO] [stdout] test kraken_output::tests::test_invalid_taxon_id ... ok [INFO] [stdout] test kraken_output::tests::test_missing_fields ... ok [INFO] [stdout] test kraken_output::tests::test_parse_unclassified_line ... ok [INFO] [stdout] test commands::report_to_tsv::tests::test_write_tsv_header_and_rows ... ok [INFO] [stdout] test kraken_output::tests::test_parse_classified_line ... ok [INFO] [stdout] test kraken_output::tests::test_reader_empty_input ... ok [INFO] [stdout] test progress::tests::test_format_count_small ... ok [INFO] [stdout] test progress::tests::test_format_count_thousands ... ok [INFO] [stdout] test progress::tests::test_format_elapsed_exact_minute ... ok [INFO] [stdout] test progress::tests::test_format_elapsed_minutes_and_seconds ... ok [INFO] [stdout] test progress::tests::test_format_elapsed_seconds_only ... ok [INFO] [stdout] test progress::tests::test_record_n_zero_is_noop ... ok [INFO] [stdout] test progress::tests::test_record_no_panic ... ok [INFO] [stdout] test report::kraken_report::tests::test_blank_lines_are_skipped ... ok [INFO] [stdout] test report::kraken_report::tests::test_children_multiple ... ok [INFO] [stdout] test kraken_output::tests::test_reader_multiple_records ... ok [INFO] [stdout] test report::kraken_report::tests::test_descendants_mid_level ... ok [INFO] [stdout] test report::kraken_report::tests::test_depth_derivation ... ok [INFO] [stdout] test report::kraken_report::tests::test_descendants_of_leaf ... ok [INFO] [stdout] test report::kraken_report::tests::test_empty_input_returns_empty_report ... ok [INFO] [stdout] test progress::tests::test_format_count_millions ... ok [INFO] [stdout] test progress::tests::test_record_n_crosses_milestones ... ok [INFO] [stdout] test report::kraken_report::tests::test_error_duplicate_taxon_ids ... ok [INFO] [stdout] test report::kraken_report::tests::test_error_non_numeric_field ... ok [INFO] [stdout] test report::kraken_report::tests::test_error_odd_leading_spaces ... ok [INFO] [stdout] test report::kraken_report::tests::test_error_unsupported_column_count ... ok [INFO] [stdout] test report::kraken_report::tests::test_index_of_taxon_id ... ok [INFO] [stdout] test report::kraken_report::tests::test_descendants_of_root ... ok [INFO] [stdout] test report::kraken_report::tests::test_names_are_trimmed ... ok [INFO] [stdout] test report::kraken_report::tests::test_only_blank_lines_returns_empty_report ... ok [INFO] [stdout] test report::kraken_report::tests::test_error_inconsistent_columns ... ok [INFO] [stdout] test report::kraken_report::tests::test_parent_child_multi_level ... ok [INFO] [stdout] test report::kraken_report::tests::test_is_empty ... ok [INFO] [stdout] test report::kraken_report::tests::test_non_standard_ranks_in_tree ... ok [INFO] [stdout] test report::kraken_report::tests::test_taxon_id_lookup_hit ... ok [INFO] [stdout] test report::kraken_report::tests::test_total_sequences ... ok [INFO] [stdout] test report::kraken_report::tests::test_total_sequences_no_unclassified ... ok [INFO] [stdout] test report::kraken_report::tests::test_percentage_parsing ... ok [INFO] [stdout] test report::kraken_report::tests::test_parse_extended_report ... ok [INFO] [stdout] test report::kraken_report::tests::test_taxon_id_lookup_miss ... ok [INFO] [stdout] test report::kraken_report::tests::test_parse_minimal_standard_report ... ok [INFO] [stdout] test report::rank::tests::test_rank_invalid ... ok [INFO] [stdout] test report::rank::tests::test_rank_round_trip_all_standard ... ok [INFO] [stdout] test report::rank::tests::test_taxonomic_rank_display_non_standard ... ok [INFO] [stdout] test report::rank::tests::test_taxonomic_rank_domain_depth ... ok [INFO] [stdout] test report::kraken_report::tests::test_standard_report_no_minimizers ... ok [INFO] [stdout] test report::rank::tests::test_taxonomic_rank_invalid_code ... ok [INFO] [stdout] test report::rank::tests::test_taxonomic_rank_empty ... ok [INFO] [stdout] test report::rank::tests::test_taxonomic_rank_standard_round_trip ... ok [INFO] [stdout] test report::rank::tests::test_taxonomic_rank_non_numeric_suffix ... ok [INFO] [stdout] test report::rank::tests::test_taxonomic_rank_zero_depth ... ok [INFO] [stdout] test report::rank::tests::test_taxonomic_rank_non_standard_parse ... ok [INFO] [stdout] [INFO] [stdout] test result: ok. 96 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running unittests src/main.rs (/opt/rustwide/target/release/build/k2tools/24485cac1a7d1e99/out/k2tools-24485cac1a7d1e99) [INFO] [stdout] [INFO] [stdout] running 0 tests [INFO] [stdout] [INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s [INFO] [stdout] [INFO] [stderr] Running tests/test_filter.rs (/opt/rustwide/target/release/build/k2tools/39bc38f099db6666/out/test_filter-39bc38f099db6666) [INFO] [stdout] [INFO] [stdout] running 32 tests [INFO] [stdout] test test_empty_inputs_single_end ... FAILED [INFO] [stdout] test test_bgz_extension_writes_bgzf_output ... FAILED [INFO] [stdout] test test_all_match ... FAILED [INFO] [stdout] test test_empty_inputs_paired_end ... FAILED [INFO] [stdout] test test_empty_inputs_to_stdout_writes_nothing ... FAILED [INFO] [stdout] test test_empty_report_nonempty_fastq ... FAILED [INFO] [stdout] test test_exclude_taxon_drops_its_reads ... FAILED [INFO] [stdout] test test_exclude_taxon_missing_from_report_is_ignored ... FAILED [INFO] [stdout] test test_exclude_with_descendants_drops_whole_clade ... FAILED [INFO] [stdout] test test_exclude_without_taxon_ids_errors ... FAILED [INFO] [stdout] test test_excluding_every_selected_taxon_errors ... FAILED [INFO] [stdout] test test_fastq_longer_than_kraken ... FAILED [INFO] [stdout] test test_gzip_compressed_input ... FAILED [INFO] [stdout] test test_fastq_names_with_suffixes ... FAILED [INFO] [stdout] test test_include_unclassified_only ... FAILED [INFO] [stdout] test test_mismatched_input_output_count ... FAILED [INFO] [stdout] test test_kraken_longer_than_fastq ... FAILED [INFO] [stdout] test test_mismatched_read_names ... FAILED [INFO] [stdout] test test_multiple_taxon_ids ... FAILED [INFO] [stdout] test test_non_gz_extension_writes_uncompressed_output ... FAILED [INFO] [stdout] test test_no_matches ... FAILED [INFO] [stdout] test test_paired_end ... FAILED [INFO] [stdout] test test_nonempty_report_missing_kraken_output ... FAILED [INFO] [stdout] test test_single_end_exact_taxon ... FAILED [INFO] [stdout] test test_paired_end_single_output_interleaves_to_stdout ... FAILED [INFO] [stdout] test test_paired_end_single_output_interleaves_to_bgzf_file ... FAILED [INFO] [stdout] test test_single_end_output_to_stdout ... FAILED [INFO] [stdout] test test_stdout_for_both_outputs_errors ... FAILED [INFO] [stdout] test test_paired_end_mixed_uncompressed_and_bgzf_outputs ... FAILED [INFO] [stdout] test test_taxon_ids_plus_unclassified ... FAILED [INFO] [stdout] test test_with_descendants ... FAILED [INFO] [stdout] test test_stdout_closed_early_by_reader_exits_successfully ... FAILED [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] [INFO] [stdout] ---- test_empty_inputs_single_end stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_empty_inputs_single_end' (2352) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc917a26 - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_bgz_extension_writes_bgzf_output stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_bgz_extension_writes_bgzf_output' (2350) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc91e24f - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_all_match stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_all_match' (2349) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc911a1c - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_empty_inputs_paired_end stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_empty_inputs_paired_end' (2351) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc917350 - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stderr] error: test failed, to rerun pass `--test test_filter` [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_empty_inputs_to_stdout_writes_nothing stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_empty_inputs_to_stdout_writes_nothing' (2353) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc91f1b1 - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_empty_report_nonempty_fastq stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_empty_report_nonempty_fastq' (2354) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc91a72f - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_exclude_taxon_drops_its_reads stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_exclude_taxon_drops_its_reads' (2355) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc91c54a - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_exclude_taxon_missing_from_report_is_ignored stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_exclude_taxon_missing_from_report_is_ignored' (2356) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc922157 - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_exclude_with_descendants_drops_whole_clade stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_exclude_with_descendants_drops_whole_clade' (2365) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc920b1d - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_exclude_without_taxon_ids_errors stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_exclude_without_taxon_ids_errors' (2366) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc91ebb7 - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_excluding_every_selected_taxon_errors stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_excluding_every_selected_taxon_errors' (2367) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc91f99b - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_fastq_longer_than_kraken stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_fastq_longer_than_kraken' (2369) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc91829e - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_gzip_compressed_input stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_gzip_compressed_input' (2371) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc9156f8 - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_fastq_names_with_suffixes stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_fastq_names_with_suffixes' (2370) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc91943b - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_include_unclassified_only stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_include_unclassified_only' (2373) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc919f2f - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_mismatched_input_output_count stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_mismatched_input_output_count' (2381) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc91cfb3 - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_kraken_longer_than_fastq stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_kraken_longer_than_fastq' (2376) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc918ad2 - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_mismatched_read_names stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_mismatched_read_names' (2382) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc9161c0 - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_multiple_taxon_ids stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_multiple_taxon_ids' (2383) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc9144c8 - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_non_gz_extension_writes_uncompressed_output stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_non_gz_extension_writes_uncompressed_output' (2385) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc921421 - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_no_matches stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_no_matches' (2384) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc9123ea - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_paired_end stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_paired_end' (2389) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc912f6d - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_nonempty_report_missing_kraken_output stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_nonempty_report_missing_kraken_output' (2386) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc9201c8 - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_single_end_exact_taxon stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_single_end_exact_taxon' (2399) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc916ab0 - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_paired_end_single_output_interleaves_to_stdout stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_paired_end_single_output_interleaves_to_stdout' (2398) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc923ba8 - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_paired_end_single_output_interleaves_to_bgzf_file stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_paired_end_single_output_interleaves_to_bgzf_file' (2397) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc92600b - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_single_end_output_to_stdout stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_single_end_output_to_stdout' (2400) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc91af48 - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_stdout_for_both_outputs_errors stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_stdout_for_both_outputs_errors' (2402) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc91d975 - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_paired_end_mixed_uncompressed_and_bgzf_outputs stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_paired_end_mixed_uncompressed_and_bgzf_outputs' (2391) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc922cef - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_taxon_ids_plus_unclassified stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_taxon_ids_plus_unclassified' (2403) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc91baf8 - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_with_descendants stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_with_descendants' (2409) panicked at tests/test_filter.rs:106:67: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc907a5c - test_filter[62eb679b476b2689]::run_filter [INFO] [stdout] 12: 0x566edc913a91 - >::call_once [INFO] [stdout] 13: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 14: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 15: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 16: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 17: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 18: 0x7a1b74a8bdfa - [INFO] [stdout] 19: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 20: 0x0 - [INFO] [stdout] [INFO] [stdout] ---- test_stdout_closed_early_by_reader_exits_successfully stdout ---- [INFO] [stdout] [INFO] [stdout] thread 'test_stdout_closed_early_by_reader_exits_successfully' (2401) panicked at tests/test_filter.rs:1160:10: [INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 2, kind: NotFound, message: "No such file or directory" } [INFO] [stdout] stack backtrace: [INFO] [stdout] 0: 0x566edc9414b5 - <::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt [INFO] [stdout] 1: 0x566edc927e5a - core[a373ad73a504971]::fmt::write [INFO] [stdout] 2: 0x566edc940b4b - as core[a373ad73a504971]::io::write::Write>::write_fmt [INFO] [stdout] 3: 0x566edc94062f - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0} [INFO] [stdout] 4: 0x566edc94025a - std[617be2ca0a6fd877]::panicking::default_hook [INFO] [stdout] 5: 0x566edc93fd95 - std[617be2ca0a6fd877]::panicking::panic_with_hook [INFO] [stdout] 6: 0x566edc966bd1 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0} [INFO] [stdout] 7: 0x566edc966b89 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace:: [INFO] [stdout] 8: 0x566edc96708c - __rustc[ea4f61d10b84890b]::rust_begin_unwind [INFO] [stdout] 9: 0x566edc927ceb - core[a373ad73a504971]::panicking::panic_fmt [INFO] [stdout] 10: 0x566edc92b171 - core[a373ad73a504971]::result::unwrap_failed [INFO] [stdout] 11: 0x566edc925435 - >::call_once [INFO] [stdout] 12: 0x566edc98214b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>> [INFO] [stdout] 13: 0x566edc97e111 - test[aada8e7e76ba119b]::run_test::{closure#0} [INFO] [stdout] 14: 0x566edc97d8fc - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace:: [INFO] [stdout] 15: 0x566edc99d59c - ::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0} [INFO] [stdout] 16: 0x566edc968904 - ::new::thread_start [INFO] [stdout] 17: 0x7a1b74a8bdfa - [INFO] [stdout] 18: 0x7a1b74b1f3d4 - clone [INFO] [stdout] 19: 0x0 - [INFO] [stdout] [INFO] [stdout] [INFO] [stdout] failures: [INFO] [stdout] test_all_match [INFO] [stdout] test_bgz_extension_writes_bgzf_output [INFO] [stdout] test_empty_inputs_paired_end [INFO] [stdout] test_empty_inputs_single_end [INFO] [stdout] test_empty_inputs_to_stdout_writes_nothing [INFO] [stdout] test_empty_report_nonempty_fastq [INFO] [stdout] test_exclude_taxon_drops_its_reads [INFO] [stdout] test_exclude_taxon_missing_from_report_is_ignored [INFO] [stdout] test_exclude_with_descendants_drops_whole_clade [INFO] [stdout] test_exclude_without_taxon_ids_errors [INFO] [stdout] test_excluding_every_selected_taxon_errors [INFO] [stdout] test_fastq_longer_than_kraken [INFO] [stdout] test_fastq_names_with_suffixes [INFO] [stdout] test_gzip_compressed_input [INFO] [stdout] test_include_unclassified_only [INFO] [stdout] test_kraken_longer_than_fastq [INFO] [stdout] test_mismatched_input_output_count [INFO] [stdout] test_mismatched_read_names [INFO] [stdout] test_multiple_taxon_ids [INFO] [stdout] test_no_matches [INFO] [stdout] test_non_gz_extension_writes_uncompressed_output [INFO] [stdout] test_nonempty_report_missing_kraken_output [INFO] [stdout] test_paired_end [INFO] [stdout] test_paired_end_mixed_uncompressed_and_bgzf_outputs [INFO] [stdout] test_paired_end_single_output_interleaves_to_bgzf_file [INFO] [stdout] test_paired_end_single_output_interleaves_to_stdout [INFO] [stdout] test_single_end_exact_taxon [INFO] [stdout] test_single_end_output_to_stdout [INFO] [stdout] test_stdout_closed_early_by_reader_exits_successfully [INFO] [stdout] test_stdout_for_both_outputs_errors [INFO] [stdout] test_taxon_ids_plus_unclassified [INFO] [stdout] test_with_descendants [INFO] [stdout] [INFO] [stdout] test result: FAILED. 0 passed; 32 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.35s [INFO] [stdout] [INFO] running `Command { std: "docker" "inspect" "7aa860559e95acd2fa30389a5c96e73038ec4b8f8439e8ab8f05af1ab54b5a95", kill_on_drop: false }` [INFO] running `Command { std: "docker" "rm" "-f" "7aa860559e95acd2fa30389a5c96e73038ec4b8f8439e8ab8f05af1ab54b5a95", kill_on_drop: false }` [INFO] [stdout] 7aa860559e95acd2fa30389a5c96e73038ec4b8f8439e8ab8f05af1ab54b5a95