[INFO] fetching crate dynamite-orfs 1.1.1...
[INFO] testing dynamite-orfs-1.1.1 against 1.100.0-beta.1+cargoflags=--release for beta-release-1.100-2
[INFO] extracting crate dynamite-orfs 1.1.1 into /workspace/builds/worker-0-tc2/source
[INFO] started tweaking crates.io crate dynamite-orfs 1.1.1
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate dynamite-orfs 1.1.1
[INFO] tweaked toml for crates.io crate dynamite-orfs 1.1.1 written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate dynamite-orfs 1.1.1 on toolchain 1.100.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate dynamite-orfs 1.1.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 5e680dacfa6af8257ef3919f842aaf95580fd70f54d14f6d06e3e0a3292bf324
[INFO] running `Command { std: "docker" "start" "5e680dacfa6af8257ef3919f842aaf95580fd70f54d14f6d06e3e0a3292bf324", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5e680dacfa6af8257ef3919f842aaf95580fd70f54d14f6d06e3e0a3292bf324", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "5e680dacfa6af8257ef3919f842aaf95580fd70f54d14f6d06e3e0a3292bf324" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "5e680dacfa6af8257ef3919f842aaf95580fd70f54d14f6d06e3e0a3292bf324", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "5e680dacfa6af8257ef3919f842aaf95580fd70f54d14f6d06e3e0a3292bf324" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.107
[INFO] [stderr]    Compiling unicode-ident v1.0.24
[INFO] [stderr]    Compiling quote v1.0.47
[INFO] [stderr]    Compiling crossbeam-utils v0.8.22
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.20
[INFO] [stderr]    Compiling crossbeam-deque v0.8.7
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling cfg-if v1.0.4
[INFO] [stderr]    Compiling simd-adler32 v0.3.10
[INFO] [stderr]    Compiling adler2 v2.0.1
[INFO] [stderr]    Compiling unicode-segmentation v1.10.1
[INFO] [stderr]    Compiling clap_lex v0.7.7
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling anyhow v1.0.104
[INFO] [stderr]    Compiling anstyle v1.0.14
[INFO] [stderr]    Compiling either v1.17.0
[INFO] [stderr]    Compiling strum v0.21.0
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling clap_builder v4.5.2
[INFO] [stderr]    Compiling flate2 v1.1.9
[INFO] [stderr]    Compiling heck v0.3.3
[INFO] [stderr]    Compiling syn v2.0.119
[INFO] [stderr]    Compiling rayon v1.10.0
[INFO] [stderr]    Compiling strum_macros v0.21.0
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling clap_derive v4.5.4
[INFO] [stderr]    Compiling clap v4.5.4
[INFO] [stderr]    Compiling dynamite-orfs v1.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 51.53s
[INFO] running `Command { std: "docker" "inspect" "5e680dacfa6af8257ef3919f842aaf95580fd70f54d14f6d06e3e0a3292bf324", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "5e680dacfa6af8257ef3919f842aaf95580fd70f54d14f6d06e3e0a3292bf324" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling crossbeam-utils v0.8.22
[INFO] [stderr]    Compiling clap_lex v0.7.7
[INFO] [stderr]    Compiling adler2 v2.0.1
[INFO] [stderr]    Compiling anstyle v1.0.14
[INFO] [stderr]    Compiling simd-adler32 v0.3.10
[INFO] [stderr]    Compiling cfg-if v1.0.4
[INFO] [stderr]    Compiling either v1.17.0
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling anyhow v1.0.104
[INFO] [stderr]    Compiling strum v0.21.0
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]    Compiling clap_builder v4.5.2
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.20
[INFO] [stderr]    Compiling crossbeam-deque v0.8.7
[INFO] [stderr]    Compiling flate2 v1.1.9
[INFO] [stderr]    Compiling rayon-core v1.12.1
[INFO] [stderr]    Compiling rayon v1.10.0
[INFO] [stderr]    Compiling clap v4.5.4
[INFO] [stderr]    Compiling dynamite-orfs v1.1.1 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 2m 17s
[INFO] running `Command { std: "docker" "inspect" "5e680dacfa6af8257ef3919f842aaf95580fd70f54d14f6d06e3e0a3292bf324", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "5e680dacfa6af8257ef3919f842aaf95580fd70f54d14f6d06e3e0a3292bf324" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--release", kill_on_drop: false }`
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 0.20s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/release/build/dynamite-orfs/0634e7f634cbd93f/out/dynamite-0634e7f634cbd93f)
[INFO] [stdout] 
[INFO] [stdout] running 49 tests
[INFO] [stdout] test finalize::tests::missing_start_and_stop_are_inferred ... ok
[INFO] [stdout] test finalize::tests::bacterial_start_rule_accepts_gtg_under_table_1 ... ok
[INFO] [stdout] test finalize::tests::complete_gene_stays_complete ... ok
[INFO] [stdout] test gcframe::tests::gc_frame_lengths ... ok
[INFO] [stdout] test gcframe::tests::idx_helpers ... ok
[INFO] [stdout] test gencode::tests::all_tables_are_64 ... ok
[INFO] [stdout] test gencode::tests::alternative_codes ... ok
[INFO] [stdout] test gencode::tests::standard_code_translation ... ok
[INFO] [stdout] test gencode::tests::stop_and_start_masks ... ok
[INFO] [stdout] test gencode::tests::start_rules ... ok
[INFO] [stdout] test gene::tests::format_parsing ... ok
[INFO] [stdout] test gene::tests::genbank_full_emits_origin ... ok
[INFO] [stdout] test gene::tests::translate_reverse_gene ... ok
[INFO] [stdout] test model::tests::parse_engines ... ok
[INFO] [stdout] test model::tests::parse_modes ... ok
[INFO] [stdout] test model::tests::presets ... ok
[INFO] [stdout] test node::tests::mask_crossing_is_half_open ... ok
[INFO] [stdout] test node::tests::masked_and_one_sided_nodes_reduce_to_add_nodes ... ok
[INFO] [stdout] test orf::tests::ambiguous_codons_are_not_stops ... ok
[INFO] [stdout] test orf::tests::no_startless_orfs_in_the_interior ... ok
[INFO] [stdout] test orf::tests::orf_listing_keeps_every_stop_to_stop_region ... ok
[INFO] [stdout] test gene::tests::translate_simple_gene ... ok
[INFO] [stdout] test finalize::tests::reverse_gene_partial_is_genomic ... ok
[INFO] [stdout] test phanotate::tests::scores_basic ... ok
[INFO] [stdout] test prodigal::tests::multi_record_training_set_ends_with_a_linker ... ok
[INFO] [stdout] test rbs::tests::perfect_sd_exact ... ok
[INFO] [stdout] test rbs::tests::phanotate_rbs_detects_motif ... ok
[INFO] [stdout] test seq::tests::ambiguous_bases_are_flagged_not_read_as_a ... ok
[INFO] [stdout] test seq::tests::ambiguous_runs_are_half_open_and_include_trailing_runs ... ok
[INFO] [stdout] test seq::tests::gc_ignores_ambiguous_codes ... ok
[INFO] [stdout] test seq::tests::gc_test ... ok
[INFO] [stdout] test seq::tests::mer_index_matches_base4 ... ok
[INFO] [stdout] test seq::tests::revcomp_roundtrip ... ok
[INFO] [stdout] test seq::tests::segments_split_only_at_long_runs ... ok
[INFO] [stdout] test sixframe::tests::proteins_have_no_stray_stops ... ok
[INFO] [stdout] test orf::tests::reverse_edge_orf_flags_are_genomic ... ok
[INFO] [stdout] test phanotate::tests::runs_and_returns_valid_genes ... ok
[INFO] [stdout] test finalize::tests::edge_start_is_partial_unless_closed ... ok
[INFO] [stdout] test finalize::tests::renumber_keeps_input_contig_order ... ok
[INFO] [stdout] test dedup::tests::long_kept_gene_still_blocks_later_candidates ... ok
[INFO] [stdout] test dedup::tests::keeps_best_and_input_contig_order ... ok
[INFO] [stdout] test fasta::tests::non_utf8_header_and_crlf ... ok
[INFO] [stdout] test finalize::tests::gap_codons_are_trimmed_and_flagged ... ok
[INFO] [stdout] test fasta::tests::parse_two_records ... ok
[INFO] [stdout] test dedup::tests::interval_search_matches_naive_reference ... ok
[INFO] [stdout] test fgs::viterbi::tests::test_reverse_read ... ok
[INFO] [stdout] test fgs::viterbi::tests::test_deletion ... ok
[INFO] [stdout] test fgs::viterbi::tests::test_forward_read ... ok
[INFO] [stdout] test annotate::tests::bundle_smoke ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 49 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.24s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/release/build/dynamite-orfs/6248413df22f63a1/out/dynamite-6248413df22f63a1)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/license.rs (/opt/rustwide/target/release/build/dynamite-orfs/45b43a22280b3019/out/license-45b43a22280b3019)
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stdout] test cargo_toml_declares_cc_by_nc_4_0 ... ok
[INFO] [stdout] test readme_states_cc_by_nc_4_0 ... ok
[INFO] [stderr]      Running tests/regressions.rs (/opt/rustwide/target/release/build/dynamite-orfs/7e51372ffac57130/out/regressions-7e51372ffac57130)
[INFO] [stdout] test license_file_is_the_cc_by_nc_4_0_legal_code ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 15 tests
[INFO] [stdout] test unsupported_code_is_an_error_not_a_panic ... ok
[INFO] [stdout] test augustus_multi_contig_does_not_panic ... ok
[INFO] [stdout] test frame_padded_edge_genes_are_partial ... ok
[INFO] [stdout] test reverse_strand_partial_flags_follow_prodigal ... ok
[INFO] [stdout] test genbank_locus_line_separates_long_ids ... ok
[INFO] [stdout] test topaz_is_detected_as_code_15 ... ok
[INFO] [stdout] test degenerate_records_do_not_panic ... ok
[INFO] [stdout] test duplicate_record_ids_stay_apart ... ok
[INFO] [stdout] test phanotate_reads_u_as_t ... ok
[INFO] [stdout] test gap_modes_follow_prodigal ... ok
[INFO] [stdout] test partial_flags_agree_with_codons_for_all_engines ... ok
[INFO] [stdout] test genes_never_end_in_or_span_assembly_gaps ... ok
[INFO] [stdout] test explicit_auto_searches_for_every_engine ... ok
[INFO] [stdout] test lambda_is_standard_code_in_every_auto_mode ... ok
[INFO] [stdout] test phanotate_survives_terminal_gaps ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 2.71s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests dynamite
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "5e680dacfa6af8257ef3919f842aaf95580fd70f54d14f6d06e3e0a3292bf324", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "5e680dacfa6af8257ef3919f842aaf95580fd70f54d14f6d06e3e0a3292bf324", kill_on_drop: false }`
[INFO] [stdout] 5e680dacfa6af8257ef3919f842aaf95580fd70f54d14f6d06e3e0a3292bf324
