[INFO] fetching crate cytos 1.2.1...
[INFO] testing cytos-1.2.1 against 1.100.0-beta.1+cargoflags=--release for beta-release-1.100-2
[INFO] extracting crate cytos 1.2.1 into /workspace/builds/worker-0-tc2/source
[INFO] started tweaking crates.io crate cytos 1.2.1
[INFO] finished tweaking crates.io crate cytos 1.2.1
[INFO] tweaked toml for crates.io crate cytos 1.2.1 written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate cytos 1.2.1 on toolchain 1.100.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate cytos 1.2.1 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] d9ff53446b5230b708d246318f6aae4148f41403844bfba8899566dde0d6abbb
[INFO] running `Command { std: "docker" "start" "d9ff53446b5230b708d246318f6aae4148f41403844bfba8899566dde0d6abbb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "d9ff53446b5230b708d246318f6aae4148f41403844bfba8899566dde0d6abbb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "d9ff53446b5230b708d246318f6aae4148f41403844bfba8899566dde0d6abbb" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "d9ff53446b5230b708d246318f6aae4148f41403844bfba8899566dde0d6abbb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "d9ff53446b5230b708d246318f6aae4148f41403844bfba8899566dde0d6abbb" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling proc-macro2 v1.0.69
[INFO] [stderr]    Compiling unicode-ident v1.0.12
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[INFO] [stderr]    Compiling rustversion v1.0.14
[INFO] [stderr]    Compiling rawpointer v0.2.1
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[INFO] [stderr]    Compiling rustc_version v0.1.7
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[INFO] [stderr]    Compiling chrono v0.4.31
[INFO] [stderr]    Compiling regex-automata v0.4.3
[INFO] [stderr]    Compiling nalgebra-macros v0.1.0
[INFO] [stderr]    Compiling derive-new v0.5.9
[INFO] [stderr]    Compiling enum-map-derive v0.6.0
[INFO] [stderr]    Compiling getset v0.1.2
[INFO] [stderr]    Compiling enum-map v1.1.1
[INFO] [stderr]    Compiling serde_derive v1.0.192
[INFO] [stderr]    Compiling thiserror-impl v1.0.50
[INFO] [stderr]    Compiling strum_macros v0.25.3
[INFO] [stderr]    Compiling clap_derive v4.4.7
[INFO] [stderr]    Compiling clap v4.4.8
[INFO] [stderr]    Compiling regex v1.10.2
[INFO] [stderr]    Compiling bio-types v1.0.1
[INFO] [stderr]    Compiling env_logger v0.10.1
[INFO] [stderr]    Compiling nalgebra v0.29.0
[INFO] [stderr]    Compiling csv v1.3.0
[INFO] [stderr]    Compiling multimap v0.8.3
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling statrs v0.16.0
[INFO] [stderr]    Compiling bio v1.4.0
[INFO] [stderr]    Compiling cytos v1.2.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]   --> src/cli/msa/concat.rs:25:28
[INFO] [stdout]    |
[INFO] [stdout] 25 | fn read_fasta_files(input: &Vec<PathBuf>) -> CytosResult<HashMap<&PathBuf, FastaFile>> {
[INFO] [stdout]    |                            ^^^^^^^^^^^^^                         ^^^^^^^^  ^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]    |                            |                                     |
[INFO] [stdout]    |                            |                                     the same lifetime is elided here
[INFO] [stdout]    |                            the lifetime is elided here
[INFO] [stdout]    |
[INFO] [stdout]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]    = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]    |
[INFO] [stdout] 25 | fn read_fasta_files(input: &Vec<PathBuf>) -> CytosResult<HashMap<&PathBuf, FastaFile<'_>>> {
[INFO] [stdout]    |                                                                                     ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: hiding a lifetime that's named elsewhere is confusing
[INFO] [stdout]   --> src/model/fasta/fasta_file.rs:17:57
[INFO] [stdout]    |
[INFO] [stdout] 17 |     pub fn load(path: &'a path::PathBuf) -> CytosResult<FastaFile> {
[INFO] [stdout]    |                        -- the lifetime is named here    ^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]    |
[INFO] [stdout]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout] help: consistently use `'a`
[INFO] [stdout]    |
[INFO] [stdout] 17 |     pub fn load(path: &'a path::PathBuf) -> CytosResult<FastaFile<'a>> {
[INFO] [stdout]    |                                                                  ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 1m 23s
[INFO] running `Command { std: "docker" "inspect" "d9ff53446b5230b708d246318f6aae4148f41403844bfba8899566dde0d6abbb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "d9ff53446b5230b708d246318f6aae4148f41403844bfba8899566dde0d6abbb" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling cytos v1.2.1 (/opt/rustwide/workdir)
[INFO] [stdout] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stdout]   --> src/cli/msa/concat.rs:25:28
[INFO] [stdout]    |
[INFO] [stdout] 25 | fn read_fasta_files(input: &Vec<PathBuf>) -> CytosResult<HashMap<&PathBuf, FastaFile>> {
[INFO] [stdout]    |                            ^^^^^^^^^^^^^                         ^^^^^^^^  ^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]    |                            |                                     |
[INFO] [stdout]    |                            |                                     the same lifetime is elided here
[INFO] [stdout]    |                            the lifetime is elided here
[INFO] [stdout]    |
[INFO] [stdout]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout]    = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stdout] help: use `'_` for type paths
[INFO] [stdout]    |
[INFO] [stdout] 25 | fn read_fasta_files(input: &Vec<PathBuf>) -> CytosResult<HashMap<&PathBuf, FastaFile<'_>>> {
[INFO] [stdout]    |                                                                                     ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: hiding a lifetime that's named elsewhere is confusing
[INFO] [stdout]   --> src/model/fasta/fasta_file.rs:17:57
[INFO] [stdout]    |
[INFO] [stdout] 17 |     pub fn load(path: &'a path::PathBuf) -> CytosResult<FastaFile> {
[INFO] [stdout]    |                        -- the lifetime is named here    ^^^^^^^^^ the same lifetime is hidden here
[INFO] [stdout]    |
[INFO] [stdout]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stdout] help: consistently use `'a`
[INFO] [stdout]    |
[INFO] [stdout] 17 |     pub fn load(path: &'a path::PathBuf) -> CytosResult<FastaFile<'a>> {
[INFO] [stdout]    |                                                                  ++++
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 10.97s
[INFO] running `Command { std: "docker" "inspect" "d9ff53446b5230b708d246318f6aae4148f41403844bfba8899566dde0d6abbb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "d9ff53446b5230b708d246318f6aae4148f41403844bfba8899566dde0d6abbb" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--release", kill_on_drop: false }`
[INFO] [stderr] warning: hiding a lifetime that's elided elsewhere is confusing
[INFO] [stderr]   --> src/cli/msa/concat.rs:25:28
[INFO] [stderr]    |
[INFO] [stderr] 25 | fn read_fasta_files(input: &Vec<PathBuf>) -> CytosResult<HashMap<&PathBuf, FastaFile>> {
[INFO] [stderr]    |                            ^^^^^^^^^^^^^                         ^^^^^^^^  ^^^^^^^^^ the same lifetime is hidden here
[INFO] [stderr]    |                            |                                     |
[INFO] [stderr]    |                            |                                     the same lifetime is elided here
[INFO] [stderr]    |                            the lifetime is elided here
[INFO] [stderr]    |
[INFO] [stderr]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stderr]    = note: `#[warn(mismatched_lifetime_syntaxes)]` on by default
[INFO] [stderr] help: use `'_` for type paths
[INFO] [stderr]    |
[INFO] [stderr] 25 | fn read_fasta_files(input: &Vec<PathBuf>) -> CytosResult<HashMap<&PathBuf, FastaFile<'_>>> {
[INFO] [stderr]    |                                                                                     ++++
[INFO] [stderr] 
[INFO] [stderr] warning: hiding a lifetime that's named elsewhere is confusing
[INFO] [stderr]   --> src/model/fasta/fasta_file.rs:17:57
[INFO] [stderr]    |
[INFO] [stderr] 17 |     pub fn load(path: &'a path::PathBuf) -> CytosResult<FastaFile> {
[INFO] [stderr]    |                        -- the lifetime is named here    ^^^^^^^^^ the same lifetime is hidden here
[INFO] [stderr]    |
[INFO] [stderr]    = help: the same lifetime is referred to in inconsistent ways, making the signature confusing
[INFO] [stderr] help: consistently use `'a`
[INFO] [stderr]    |
[INFO] [stderr] 17 |     pub fn load(path: &'a path::PathBuf) -> CytosResult<FastaFile<'a>> {
[INFO] [stderr]    |                                                                  ++++
[INFO] [stderr] 
[INFO] [stderr] warning: `cytos` (bin "cytos" test) generated 2 warnings (run `cargo fix --bin "cytos" -p cytos --tests` to apply 2 suggestions)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 0.21s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/release/build/cytos/f9c179e6d871b1dc/out/cytos-f9c179e6d871b1dc)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "d9ff53446b5230b708d246318f6aae4148f41403844bfba8899566dde0d6abbb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "d9ff53446b5230b708d246318f6aae4148f41403844bfba8899566dde0d6abbb", kill_on_drop: false }`
[INFO] [stdout] d9ff53446b5230b708d246318f6aae4148f41403844bfba8899566dde0d6abbb
