[INFO] cloning repository https://github.com/omicstools/seqrs
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/omicstools/seqrs" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fomicstools%2Fseqrs", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fomicstools%2Fseqrs'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 5b5716bab0000a135bc1a9d92bea687641737365
[INFO] testing omicstools/seqrs against 1.100.0-beta.1+cargoflags=--release for beta-release-1.100-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2Fomicstools%2Fseqrs" "/workspace/builds/worker-5-tc2/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-5-tc2/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/omicstools/seqrs
[INFO] finished tweaking git repo https://github.com/omicstools/seqrs
[INFO] tweaked toml for git repo https://github.com/omicstools/seqrs written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/omicstools/seqrs on toolchain 1.100.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/omicstools/seqrs already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 6b4c762040d670ba80a63107fea359d35f97d8df2e407da0aef03d7de876606d
[INFO] running `Command { std: "docker" "start" "6b4c762040d670ba80a63107fea359d35f97d8df2e407da0aef03d7de876606d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6b4c762040d670ba80a63107fea359d35f97d8df2e407da0aef03d7de876606d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6b4c762040d670ba80a63107fea359d35f97d8df2e407da0aef03d7de876606d" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6b4c762040d670ba80a63107fea359d35f97d8df2e407da0aef03d7de876606d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6b4c762040d670ba80a63107fea359d35f97d8df2e407da0aef03d7de876606d" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling quote v1.0.45
[INFO] [stderr]    Compiling zerocopy v0.8.50
[INFO] [stderr]    Compiling memchr v2.8.1
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling libm v0.2.16
[INFO] [stderr]    Compiling getrandom v0.2.17
[INFO] [stderr]    Compiling cc v1.2.63
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling matrixmultiply v0.3.10
[INFO] [stderr]    Compiling proc-macro2 v0.4.30
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling bytemuck v1.25.0
[INFO] [stderr]    Compiling getrandom v0.3.4
[INFO] [stderr]    Compiling aho-corasick v1.1.4
[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling cmake v0.1.58
[INFO] [stderr]    Compiling semver v0.1.20
[INFO] [stderr]    Compiling vcpkg v0.2.15
[INFO] [stderr]    Compiling regex-syntax v0.8.10
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling unicode-xid v0.1.0
[INFO] [stderr]    Compiling rawpointer v0.2.1
[INFO] [stderr]    Compiling libz-sys v1.1.29
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling rustc_version v0.1.7
[INFO] [stderr]    Compiling wide v0.7.33
[INFO] [stderr]    Compiling feature-probe v0.1.1
[INFO] [stderr]    Compiling syn v0.15.44
[INFO] [stderr]    Compiling bv v0.11.1
[INFO] [stderr]    Compiling newtype_derive v0.1.6
[INFO] [stderr]    Compiling quote v0.6.13
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling rand v0.8.6
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling simba v0.9.1
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling proc-macro-error-attr2 v2.0.0
[INFO] [stderr]    Compiling typenum v1.20.1
[INFO] [stderr]    Compiling foldhash v0.1.5
[INFO] [stderr]    Compiling portable-atomic v1.13.1
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[INFO] [stderr]    Compiling hashbrown v0.15.5
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]    Compiling proc-macro-error2 v2.0.1
[INFO] [stderr]    Compiling strum_macros v0.26.4
[INFO] [stderr]    Compiling enum-map-derive v0.17.0
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling derive-new v0.6.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling rand_core v0.9.5
[INFO] [stderr]    Compiling csv-core v0.1.13
[INFO] [stderr]    Compiling unicode-linebreak v0.1.5
[INFO] [stderr]    Compiling fixedbitset v0.5.7
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling plotters-backend v0.3.7
[INFO] [stderr]    Compiling smawk v0.3.2
[INFO] [stderr]    Compiling csv v1.4.0
[INFO] [stderr]    Compiling plotters-svg v0.3.7
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling textwrap v0.16.2
[INFO] [stderr]    Compiling bit-set v0.8.0
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]    Compiling clap_builder v4.6.0
[INFO] [stderr]    Compiling console v0.15.11
[INFO] [stderr]    Compiling derefable v0.1.0
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling petgraph v0.8.3
[INFO] [stderr]    Compiling nalgebra v0.33.3
[INFO] [stderr]    Compiling rand_chacha v0.9.0
[INFO] [stderr]    Compiling vec_map v0.8.2
[INFO] [stderr]    Compiling multimap v0.10.1
[INFO] [stderr]    Compiling enum-map v2.7.3
[INFO] [stderr]    Compiling getset v0.1.6
[INFO] [stderr]    Compiling clap_derive v4.6.1
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling ordered-float v5.3.0
[INFO] [stderr]    Compiling itertools-num v0.1.3
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling number_prefix v0.4.0
[INFO] [stderr]    Compiling custom_derive v0.1.7
[INFO] [stderr]    Compiling editdistancek v1.0.2
[INFO] [stderr]    Compiling triple_accel v0.4.0
[INFO] [stderr]    Compiling bytecount v0.6.9
[INFO] [stderr]    Compiling unicode-width v0.1.14
[INFO] [stderr]    Compiling strum v0.26.3
[INFO] [stderr]    Compiling clap v4.6.1
[INFO] [stderr]    Compiling indicatif v0.17.11
[INFO] [stderr]    Compiling ferris-says v0.3.2
[INFO] [stderr]    Compiling rand v0.9.4
[INFO] [stderr]    Compiling plotters v0.3.7
[INFO] [stderr]    Compiling statrs v0.18.0
[INFO] [stderr]    Compiling flate2 v1.1.9
[INFO] [stderr]    Compiling bio v3.0.0
[INFO] [stderr]    Compiling kseq v0.5.3
[INFO] [stderr]    Compiling seqrs v1.0.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 3m 37s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2`
[INFO] running `Command { std: "docker" "inspect" "6b4c762040d670ba80a63107fea359d35f97d8df2e407da0aef03d7de876606d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6b4c762040d670ba80a63107fea359d35f97d8df2e407da0aef03d7de876606d" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling predicates-core v1.0.10
[INFO] [stderr]    Compiling float-cmp v0.10.0
[INFO] [stderr]    Compiling termtree v0.5.1
[INFO] [stderr]    Compiling difflib v0.4.0
[INFO] [stderr]    Compiling normalize-line-endings v0.3.0
[INFO] [stderr]    Compiling assert_cmd v2.2.2
[INFO] [stderr]    Compiling wait-timeout v0.2.1
[INFO] [stderr]    Compiling predicates-tree v1.0.13
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]    Compiling bstr v1.12.1
[INFO] [stderr]    Compiling bio-types v1.0.4
[INFO] [stderr]    Compiling predicates v3.1.4
[INFO] [stderr]    Compiling ferris-says v0.3.2
[INFO] [stderr]    Compiling bio v3.0.0
[INFO] [stderr]    Compiling seqrs v1.0.0 (/opt/rustwide/workdir)
[INFO] [stderr] warning: unused dependency `assert_cmd`
[INFO] [stderr]   --> Cargo.toml:20:1
[INFO] [stderr]    |
[INFO] [stderr] 20 | assert_cmd = "2.1"
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `assert_cmd`
[INFO] [stderr] warning: `seqrs` (manifest) generated 1 warning
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 47.16s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2`
[INFO] running `Command { std: "docker" "inspect" "6b4c762040d670ba80a63107fea359d35f97d8df2e407da0aef03d7de876606d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6b4c762040d670ba80a63107fea359d35f97d8df2e407da0aef03d7de876606d" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--release", kill_on_drop: false }`
[INFO] [stderr] warning: unused dependency `assert_cmd`
[INFO] [stderr]   --> Cargo.toml:20:1
[INFO] [stderr]    |
[INFO] [stderr] 20 | assert_cmd = "2.1"
[INFO] [stderr]    | ^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::unused_dependencies` is set to `warn` by default
[INFO] [stderr] help: consider removing the dependency on `assert_cmd`
[INFO] [stderr] warning: `seqrs` (manifest) generated 1 warning
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 0.21s
[INFO] [stderr] warning: the following packages contain code that will be rejected by a future version of Rust: proc-macro-error2 v2.0.1
[INFO] [stderr] note: to see what the problems were, use the option `--future-incompat-report`, or run `cargo report future-incompatibilities --id 2`
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/release/build/seqrs/e99ce995ed39dcfa/out/seqrs-e99ce995ed39dcfa)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "6b4c762040d670ba80a63107fea359d35f97d8df2e407da0aef03d7de876606d", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6b4c762040d670ba80a63107fea359d35f97d8df2e407da0aef03d7de876606d", kill_on_drop: false }`
[INFO] [stdout] 6b4c762040d670ba80a63107fea359d35f97d8df2e407da0aef03d7de876606d
