[INFO] cloning repository https://github.com/Yamkela-18/transfuse_rust
[INFO] running `Command { std: "git" "-c" "credential.helper=" "-c" "credential.helper=/workspace/cargo-home/bin/git-credential-null" "clone" "--bare" "https://github.com/Yamkela-18/transfuse_rust" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FYamkela-18%2Ftransfuse_rust", kill_on_drop: false }`
[INFO] [stderr] Cloning into bare repository '/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FYamkela-18%2Ftransfuse_rust'...
[INFO] running `Command { std: "git" "rev-parse" "HEAD", kill_on_drop: false }`
[INFO] [stdout] 7676b608b0e72fa4f0af8868857e85c1b16495a8
[INFO] testing Yamkela-18/transfuse_rust against 1.99.0-beta.8+cargoflags=--release for beta-release-1.100-2
[INFO] running `Command { std: "git" "clone" "/workspace/cache/git-repos/https%3A%2F%2Fgithub.com%2FYamkela-18%2Ftransfuse_rust" "/workspace/builds/worker-7-tc1/source", kill_on_drop: false }`
[INFO] [stderr] Cloning into '/workspace/builds/worker-7-tc1/source'...
[INFO] [stderr] done.
[INFO] started tweaking git repo https://github.com/Yamkela-18/transfuse_rust
[INFO] finished tweaking git repo https://github.com/Yamkela-18/transfuse_rust
[INFO] tweaked toml for git repo https://github.com/Yamkela-18/transfuse_rust written to /workspace/builds/worker-7-tc1/source/Cargo.toml
[INFO] validating manifest of git repo https://github.com/Yamkela-18/transfuse_rust on toolchain 1.99.0-beta.8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate git repo https://github.com/Yamkela-18/transfuse_rust already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded jiff-static v0.2.28
[INFO] [stderr]   Downloaded jiff v0.2.28
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-7-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 4f170b954434e92c954374923ca0111d23bbc371b86ef59d456fefbed961a66b
[INFO] running `Command { std: "docker" "start" "4f170b954434e92c954374923ca0111d23bbc371b86ef59d456fefbed961a66b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4f170b954434e92c954374923ca0111d23bbc371b86ef59d456fefbed961a66b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "4f170b954434e92c954374923ca0111d23bbc371b86ef59d456fefbed961a66b" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "4f170b954434e92c954374923ca0111d23bbc371b86ef59d456fefbed961a66b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "4f170b954434e92c954374923ca0111d23bbc371b86ef59d456fefbed961a66b" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling memchr v2.8.1
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]    Compiling libc v0.2.186
[INFO] [stderr]    Compiling bitflags v2.11.1
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling regex-syntax v0.8.10
[INFO] [stderr]    Compiling once_cell v1.21.4
[INFO] [stderr]    Compiling rayon-core v1.13.0
[INFO] [stderr]    Compiling portable-atomic v1.13.1
[INFO] [stderr]    Compiling anyhow v1.0.102
[INFO] [stderr]    Compiling crossbeam-epoch v0.9.18
[INFO] [stderr]    Compiling log v0.4.30
[INFO] [stderr]    Compiling unicode-width v0.2.2
[INFO] [stderr]    Compiling clap_derive v4.6.1
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling number_prefix v0.4.0
[INFO] [stderr]    Compiling either v1.16.0
[INFO] [stderr]    Compiling jiff v0.2.28
[INFO] [stderr]    Compiling colored v2.2.0
[INFO] [stderr]    Compiling crossbeam-deque v0.8.6
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling aho-corasick v1.1.4
[INFO] [stderr]    Compiling csv-core v0.1.13
[INFO] [stderr]    Compiling rayon v1.12.0
[INFO] [stderr]    Compiling console v0.15.11
[INFO] [stderr]    Compiling getrandom v0.4.2
[INFO] [stderr]    Compiling indicatif v0.17.11
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling terminal_size v0.4.4
[INFO] [stderr]    Compiling tempfile v3.27.0
[INFO] [stderr]    Compiling clap_builder v4.6.0
[INFO] [stderr]    Compiling csv v1.4.0
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling clap v4.6.1
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]    Compiling env_filter v1.0.1
[INFO] [stderr]    Compiling env_logger v0.11.10
[INFO] [stderr]    Compiling transfuse v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 50.37s
[INFO] running `Command { std: "docker" "inspect" "4f170b954434e92c954374923ca0111d23bbc371b86ef59d456fefbed961a66b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "4f170b954434e92c954374923ca0111d23bbc371b86ef59d456fefbed961a66b" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling regex-syntax v0.8.10
[INFO] [stderr]    Compiling autocfg v1.5.1
[INFO] [stderr]    Compiling predicates-core v1.0.10
[INFO] [stderr]    Compiling assert_cmd v2.2.2
[INFO] [stderr]    Compiling difflib v0.4.0
[INFO] [stderr]    Compiling normalize-line-endings v0.3.0
[INFO] [stderr]    Compiling termtree v0.5.1
[INFO] [stderr]    Compiling wait-timeout v0.2.1
[INFO] [stderr]    Compiling predicates-tree v1.0.13
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling float-cmp v0.10.0
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]    Compiling bstr v1.12.1
[INFO] [stderr]    Compiling predicates v3.1.4
[INFO] [stderr]    Compiling env_filter v1.0.1
[INFO] [stderr]    Compiling env_logger v0.11.10
[INFO] [stderr]    Compiling transfuse v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 24.80s
[INFO] running `Command { std: "docker" "inspect" "4f170b954434e92c954374923ca0111d23bbc371b86ef59d456fefbed961a66b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "4f170b954434e92c954374923ca0111d23bbc371b86ef59d456fefbed961a66b" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "test" "--frozen" "--release", kill_on_drop: false }`
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 0.14s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/release/deps/transfuse-822627f858a3ca63)
[INFO] [stdout] 
[INFO] [stdout] running 51 tests
[INFO] [stdout] test bam::tests::test_median_and_mad_robust_to_outlier ... ok
[INFO] [stdout] test bam::tests::test_score_pileup_line_all_matches ... ok
[INFO] [stdout] test bam::tests::test_score_pileup_line_skips_indel_and_start_end_markers ... ok
[INFO] [stdout] test bam::tests::test_add_to_windows_splits_across_boundary ... ok
[INFO] [stdout] test bam::tests::test_score_pileup_line_empty_returns_none ... ok
[INFO] [stdout] test bam::tests::test_pair_is_concordant ... ok
[INFO] [stdout] test cluster::tests::test_parse_uc_file ... ok
[INFO] [stdout] test cluster::tests::test_stream_vsearch_progress_reads_carriage_return_updates ... ok
[INFO] [stdout] test bam::tests::test_cigar_ref_len ... ok
[INFO] [stdout] test bam::tests::test_score_range ... ok
[INFO] [stdout] test bam::tests::test_zero_length_score ... ok
[INFO] [stdout] test cluster::tests::test_extract_trailing_percent_absent ... ok
[INFO] [stdout] test cluster::tests::test_extract_trailing_percent_present ... ok
[INFO] [stdout] test bam::tests::test_score_pileup_line_with_mismatch ... ok
[INFO] [stdout] test bam::tests::test_parse_coverage_line ... ok
[INFO] [stdout] test cluster::tests::test_validate_identity_bad ... ok
[INFO] [stdout] test cluster::tests::test_parse_uc_complex ... ok
[INFO] [stdout] test consensus::tests::test_parse_multiple_clusters ... ok
[INFO] [stdout] test aligner::tests::test_bam_path_derivation ... ok
[INFO] [stdout] test consensus::tests::test_parse_clusters_file_without_trailing_separator ... ok
[INFO] [stdout] test consensus::tests::test_pick_best_fallback_no_scores ... ok
[INFO] [stdout] test consensus::tests::test_consensus_path_derivation ... ok
[INFO] [stdout] test consensus::tests::test_parse_clusters_strips_centroid_asterisk ... ok
[INFO] [stdout] test deps::tests::test_semver_ordering ... ok
[INFO] [stdout] test consensus::tests::test_pick_best_by_score ... ok
[INFO] [stdout] test consensus::tests::test_parse_clusters_blank_line_separator ... ok
[INFO] [stdout] test deps::tests::test_semver_parse_basic ... ok
[INFO] [stdout] test consensus::tests::test_parse_clusters_excludes_consensus_record ... ok
[INFO] [stdout] test consensus::tests::test_parse_single_cluster ... ok
[INFO] [stdout] test consensus::tests::test_build_consensus_full_pipeline ... ok
[INFO] [stdout] test filter::tests::test_filter_assemblies_errors_on_missing_score ... ok
[INFO] [stdout] test bam::tests::test_compute_coverage_calls_on_phase_expected_number_of_times ... ok
[INFO] [stdout] test deps::tests::test_semver_parse_finds_version_after_leading_text ... ok
[INFO] [stdout] test deps::tests::test_semver_parse_missing_components_default_to_zero ... ok
[INFO] [stdout] test deps::tests::test_semver_parse_no_digits_returns_none ... ok
[INFO] [stdout] test deps::tests::test_semver_parse_stops_at_non_numeric_suffix ... ok
[INFO] [stdout] test filter::tests::test_min_score_can_raise_but_not_lower_the_floor ... ok
[INFO] [stdout] test filter::tests::test_filter_assemblies_screens_per_contig_not_per_file ... ok
[INFO] [stdout] test quant::tests::test_effective_coverage_normal_case ... ok
[INFO] [stdout] test quant::tests::test_effective_coverage_short_contig_inflates ... ok
[INFO] [stdout] test fasta::tests::test_concatenate_prefixes_ids ... ok
[INFO] [stdout] test quant::tests::test_effective_coverage_zero_eff_len ... ok
[INFO] [stdout] test filter::tests::test_write_filtered_fasta ... ok
[INFO] [stdout] test fasta::tests::test_empty_lines_ignored ... ok
[INFO] [stdout] test fasta::tests::test_lowercase_normalised ... ok
[INFO] [stdout] test fasta::tests::test_parse_multiple_records ... ok
[INFO] [stdout] test fasta::tests::test_parse_single_record ... ok
[INFO] [stdout] test fasta::tests::test_concatenate_stable_index_when_filtered ... ok
[INFO] [stdout] test filter::tests::test_filter_assemblies_empty_survivors_still_returns_a_path ... ok
[INFO] [stdout] test cluster::tests::test_validate_identity_ok ... ok
[INFO] [stdout] test fasta::tests::test_write_round_trip ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 51 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "4f170b954434e92c954374923ca0111d23bbc371b86ef59d456fefbed961a66b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "4f170b954434e92c954374923ca0111d23bbc371b86ef59d456fefbed961a66b", kill_on_drop: false }`
[INFO] [stdout] 4f170b954434e92c954374923ca0111d23bbc371b86ef59d456fefbed961a66b
