[INFO] fetching crate tidyvcf 0.7.4...
[INFO] testing tidyvcf-0.7.4 against 1.99.0-beta.8+cargoflags=--release for beta-release-1.100-2
[INFO] extracting crate tidyvcf 0.7.4 into /workspace/builds/worker-2-tc1/source
[INFO] started tweaking crates.io crate tidyvcf 0.7.4
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate tidyvcf 0.7.4
[INFO] tweaked toml for crates.io crate tidyvcf 0.7.4 written to /workspace/builds/worker-2-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate tidyvcf 0.7.4 on toolchain 1.99.0-beta.8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate tidyvcf 0.7.4 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-core v0.17.0
[INFO] [stderr]   Downloaded noodles-vcf v0.77.0
[INFO] [stderr]   Downloaded noodles-csi v0.47.0
[INFO] [stderr]   Downloaded noodles v0.97.0
[INFO] [stderr]   Downloaded noodles-tabix v0.53.0
[INFO] [stderr]   Downloaded libz-rs-sys v0.5.0
[INFO] [stderr]   Downloaded clap v4.5.37
[INFO] [stderr]   Downloaded noodles-bgzf v0.39.0
[INFO] [stderr]   Downloaded zlib-rs v0.5.0
[INFO] [stderr]   Downloaded clap_builder v4.5.37
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-2-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] b6b02ff38c506f9b70812fea9bbe32c762911e16421fcd5f48bdaaa675abd7d7
[INFO] running `Command { std: "docker" "start" "b6b02ff38c506f9b70812fea9bbe32c762911e16421fcd5f48bdaaa675abd7d7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b6b02ff38c506f9b70812fea9bbe32c762911e16421fcd5f48bdaaa675abd7d7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "b6b02ff38c506f9b70812fea9bbe32c762911e16421fcd5f48bdaaa675abd7d7" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "b6b02ff38c506f9b70812fea9bbe32c762911e16421fcd5f48bdaaa675abd7d7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "b6b02ff38c506f9b70812fea9bbe32c762911e16421fcd5f48bdaaa675abd7d7" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]    Compiling adler2 v2.0.0
[INFO] [stderr]    Compiling zlib-rs v0.5.0
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling proc-macro2 v1.0.95
[INFO] [stderr]    Compiling unicode-ident v1.0.18
[INFO] [stderr]    Compiling bytes v1.10.1
[INFO] [stderr]    Compiling hashbrown v0.15.2
[INFO] [stderr]    Compiling equivalent v1.0.2
[INFO] [stderr]    Compiling byteorder v1.5.0
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling utf8parse v0.2.2
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.1
[INFO] [stderr]    Compiling colorchoice v1.0.3
[INFO] [stderr]    Compiling crc32fast v1.4.2
[INFO] [stderr]    Compiling anstyle-query v1.1.2
[INFO] [stderr]    Compiling anstyle-parse v0.2.6
[INFO] [stderr]    Compiling miniz_oxide v0.8.8
[INFO] [stderr]    Compiling anstyle v1.0.10
[INFO] [stderr]    Compiling clap_lex v0.7.4
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling percent-encoding v2.3.1
[INFO] [stderr]    Compiling heck v0.5.0
[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]    Compiling ryu v1.0.20
[INFO] [stderr]    Compiling itoa v1.0.15
[INFO] [stderr]    Compiling anstream v0.6.18
[INFO] [stderr]    Compiling clap_builder v4.5.37
[INFO] [stderr]    Compiling bstr v1.12.0
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling csv-core v0.1.12
[INFO] [stderr]    Compiling quote v1.0.40
[INFO] [stderr]    Compiling crossbeam-channel v0.5.15
[INFO] [stderr]    Compiling syn v2.0.100
[INFO] [stderr]    Compiling indexmap v2.9.0
[INFO] [stderr]    Compiling noodles-core v0.17.0
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling libz-rs-sys v0.5.0
[INFO] [stderr]    Compiling flate2 v1.1.1
[INFO] [stderr]    Compiling csv v1.3.1
[INFO] [stderr]    Compiling noodles-bgzf v0.39.0
[INFO] [stderr]    Compiling noodles-csi v0.47.0
[INFO] [stderr]    Compiling clap_derive v4.5.32
[INFO] [stderr]    Compiling noodles-tabix v0.53.0
[INFO] [stderr]    Compiling noodles-vcf v0.77.0
[INFO] [stderr]    Compiling clap v4.5.37
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling noodles v0.97.0
[INFO] [stderr]    Compiling tidyvcf v0.7.4 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 40.66s
[INFO] running `Command { std: "docker" "inspect" "b6b02ff38c506f9b70812fea9bbe32c762911e16421fcd5f48bdaaa675abd7d7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "b6b02ff38c506f9b70812fea9bbe32c762911e16421fcd5f48bdaaa675abd7d7" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling memchr v2.7.4
[INFO] [stderr]    Compiling regex-syntax v0.8.5
[INFO] [stderr]    Compiling zlib-rs v0.5.0
[INFO] [stderr]    Compiling adler2 v2.0.0
[INFO] [stderr]    Compiling cfg-if v1.0.0
[INFO] [stderr]    Compiling anstyle v1.0.10
[INFO] [stderr]    Compiling hashbrown v0.15.2
[INFO] [stderr]    Compiling crossbeam-utils v0.8.21
[INFO] [stderr]    Compiling equivalent v1.0.2
[INFO] [stderr]    Compiling autocfg v1.4.0
[INFO] [stderr]    Compiling byteorder v1.5.0
[INFO] [stderr]    Compiling bytes v1.10.1
[INFO] [stderr]    Compiling regex-automata v0.4.9
[INFO] [stderr]    Compiling utf8parse v0.2.2
[INFO] [stderr]    Compiling bit-vec v0.8.0
[INFO] [stderr]    Compiling colorchoice v1.0.3
[INFO] [stderr]    Compiling crc32fast v1.4.2
[INFO] [stderr]    Compiling anstyle-parse v0.2.6
[INFO] [stderr]    Compiling libc v0.2.172
[INFO] [stderr]    Compiling anstyle-query v1.1.2
[INFO] [stderr]    Compiling miniz_oxide v0.8.8
[INFO] [stderr]    Compiling is_terminal_polyfill v1.70.1
[INFO] [stderr]    Compiling strsim v0.11.1
[INFO] [stderr]    Compiling doc-comment v0.3.3
[INFO] [stderr]    Compiling percent-encoding v2.3.1
[INFO] [stderr]    Compiling anstream v0.6.18
[INFO] [stderr]    Compiling clap_lex v0.7.4
[INFO] [stderr]    Compiling predicates-core v1.0.9
[INFO] [stderr]    Compiling serde v1.0.219
[INFO] [stderr]    Compiling ryu v1.0.20
[INFO] [stderr]    Compiling itoa v1.0.15
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling clap_builder v4.5.37
[INFO] [stderr]    Compiling assert_cmd v2.0.17
[INFO] [stderr]    Compiling difflib v0.4.0
[INFO] [stderr]    Compiling termtree v0.5.1
[INFO] [stderr]    Compiling aho-corasick v1.1.3
[INFO] [stderr]    Compiling crossbeam-channel v0.5.15
[INFO] [stderr]    Compiling indexmap v2.9.0
[INFO] [stderr]    Compiling csv-core v0.1.12
[INFO] [stderr]    Compiling normalize-line-endings v0.3.0
[INFO] [stderr]    Compiling predicates-tree v1.0.12
[INFO] [stderr]    Compiling wait-timeout v0.2.1
[INFO] [stderr]    Compiling float-cmp v0.10.0
[INFO] [stderr]    Compiling csv v1.3.1
[INFO] [stderr]    Compiling libz-rs-sys v0.5.0
[INFO] [stderr]    Compiling flate2 v1.1.1
[INFO] [stderr]    Compiling noodles-bgzf v0.39.0
[INFO] [stderr]    Compiling clap v4.5.37
[INFO] [stderr]    Compiling bstr v1.12.0
[INFO] [stderr]    Compiling regex v1.11.1
[INFO] [stderr]    Compiling noodles-core v0.17.0
[INFO] [stderr]    Compiling noodles-csi v0.47.0
[INFO] [stderr]    Compiling noodles-tabix v0.53.0
[INFO] [stderr]    Compiling noodles-vcf v0.77.0
[INFO] [stderr]    Compiling predicates v3.1.3
[INFO] [stderr]    Compiling noodles v0.97.0
[INFO] [stderr]    Compiling tidyvcf v0.7.4 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 1m 38s
[INFO] running `Command { std: "docker" "inspect" "b6b02ff38c506f9b70812fea9bbe32c762911e16421fcd5f48bdaaa675abd7d7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "b6b02ff38c506f9b70812fea9bbe32c762911e16421fcd5f48bdaaa675abd7d7" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "test" "--frozen" "--release", kill_on_drop: false }`
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 0.12s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/release/deps/tidyvcf-775d739b45a656ea)
[INFO] [stdout] 
[INFO] [stdout] running 22 tests
[INFO] [stdout] test schema::tests::detects_fixed_info_and_stacked_format_collisions ... ok
[INFO] [stdout] test schema::tests::plans_fixed_columns_in_canonical_order ... ok
[INFO] [stdout] test schema::tests::detects_vep_prefix_and_wide_delimiter_collisions ... ok
[INFO] [stdout] test schema::tests::plans_info_columns_with_configured_prefixes ... ok
[INFO] [stdout] test schema::tests::plans_stacked_format_columns_once ... ok
[INFO] [stdout] test schema::tests::plans_selected_vep_columns_and_overflow ... ok
[INFO] [stdout] test schema::tests::simultaneous_just_and_not_is_set_difference ... ok
[INFO] [stdout] test utils::tests::renders_each_info_array_type_and_missing_elements ... ok
[INFO] [stdout] test specification::tests::reports_eof_before_column_header ... ok
[INFO] [stdout] test specification::tests::applies_named_targeted_repairs_without_downgrading_vcf ... ok
[INFO] [stdout] test specification::tests::retains_parseable_nonstandard_metadata ... ok
[INFO] [stdout] test tests::reports_final_flush_errors ... ok
[INFO] [stdout] test utils::tests::recognizes_gzip_suffixes ... ok
[INFO] [stdout] test cli::tests::reports_gzip_finalization_errors ... ok
[INFO] [stdout] test schema::tests::rejects_unknown_and_duplicate_requests_with_context ... ok
[INFO] [stdout] test utils::tests::renders_each_format_array_type_and_missing_elements ... ok
[INFO] [stdout] test specification::tests::enforces_header_size_limit_while_reading ... ok
[INFO] [stdout] test schema::tests::plans_wide_format_columns_by_alias_or_exact_name ... ok
[INFO] [stdout] test utils::tests::renders_format_scalars ... ok
[INFO] [stdout] test utils::tests::renders_genotypes_without_changing_alleles_or_phasing ... ok
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/release/deps/tidyvcf-63c4856366d9bf02)
[INFO] [stdout] test utils::tests::renders_info_scalars ... ok
[INFO] [stdout] test utils::tests::reports_unexpected_runtime_csq_value_types ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 22 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/cli.rs (/opt/rustwide/target/release/deps/cli-fcc828ad6dea8e47)
[INFO] [stdout] 
[INFO] [stdout] running 9 tests
[INFO] [stdout] test file_doesnt_exist ... ok
[INFO] [stdout] test matches_previous_run ... FAILED
[INFO] [stdout] test spec_noncompliance_allowed_lenient ... ok
[INFO] [stdout] test named_output_is_replaced_only_after_success ... ok
[INFO] [stdout] test bgzf_file_and_stdin_round_trip ... ok
[INFO] [stdout] test gzip_output_round_trips ... ok
[INFO] [stdout] test stdin_and_stdout_round_trip ... ok
[INFO] [stdout] test subsetting_columns_works ... ok
[INFO] [stdout] test stdout_broken_pipe_is_successful_cancellation ... ok
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- matches_previous_run stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'matches_previous_run' (2850) panicked at /rustc/dfb0accb7f508ae8be965d8629557221c889dd98/library/core/src/ops/function.rs:250:5:
[INFO] [stdout] Unexpected failure.
[INFO] [stdout] code=1
[INFO] [stdout] stderr=```"Error: Os { code: 30, kind: ReadOnlyFilesystem, message: \"Read-only file system\" }\n"```
[INFO] [stdout] command=`"/opt/rustwide/target/release/tidyvcf" "-v" "-s" "-i" "resources/test.vcf" "-o" "test.tsv"`
[INFO] [stdout] code=1
[INFO] [stdout] stdout=""
[INFO] [stdout] stderr="Error: Os { code: 30, kind: ReadOnlyFilesystem, message: \"Read-only file system\" }\n"
[INFO] [stdout] 
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x6459bb305f76 - <unknown>
[INFO] [stdout]    1:     0x6459bb2b064a - <unknown>
[INFO] [stdout]    2:     0x6459bb30dc8c - <unknown>
[INFO] [stdout]    3:     0x6459bb2dcc42 - <unknown>
[INFO] [stdout]    4:     0x6459bb2fd341 - <unknown>
[INFO] [stdout]    5:     0x6459bb2fd522 - <unknown>
[INFO] [stdout]    6:     0x6459bb2dccf2 - <unknown>
[INFO] [stdout]    7:     0x6459bb2d58d9 - <unknown>
[INFO] [stdout]    8:     0x6459bb2e1bed - <unknown>
[INFO] [stdout]    9:     0x6459bb2b0d3c - <unknown>
[INFO] [stdout]   10:     0x6459bb29b413 - <unknown>
[INFO] [stdout]   11:     0x6459bb2a659f - <unknown>
[INFO] [stdout]   12:     0x6459bb30fa2b - <unknown>
[INFO] [stdout]   13:     0x6459bb31db81 - <unknown>
[INFO] [stdout]   14:     0x6459bb317294 - <unknown>
[INFO] [stdout]   15:     0x6459bb3219a2 - <unknown>
[INFO] [stdout]   16:     0x6459bb304d1e - <unknown>
[INFO] [stdout]   17:     0x7b03c9b20dfa - <unknown>
[INFO] [stdout]   18:     0x7b03c9bb43d4 - clone
[INFO] [stdout]   19:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     matches_previous_run
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 8 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.05s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass `--test cli`
[INFO] running `Command { std: "docker" "inspect" "b6b02ff38c506f9b70812fea9bbe32c762911e16421fcd5f48bdaaa675abd7d7", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "b6b02ff38c506f9b70812fea9bbe32c762911e16421fcd5f48bdaaa675abd7d7", kill_on_drop: false }`
[INFO] [stdout] b6b02ff38c506f9b70812fea9bbe32c762911e16421fcd5f48bdaaa675abd7d7
