[INFO] fetching crate sbol-cli 1.0.0...
[INFO] testing sbol-cli-1.0.0 against 1.100.0-beta.1+cargoflags=--release for beta-release-1.100-2
[INFO] extracting crate sbol-cli 1.0.0 into /workspace/builds/worker-3-tc2/source
[INFO] started tweaking crates.io crate sbol-cli 1.0.0
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate sbol-cli 1.0.0
[INFO] tweaked toml for crates.io crate sbol-cli 1.0.0 written to /workspace/builds/worker-3-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate sbol-cli 1.0.0 on toolchain 1.100.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate sbol-cli 1.0.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]   --> Cargo.toml:50:12
[INFO] [stderr]    |
[INFO] [stderr] 50 | homepage = "https://github.com/SynBioDex/sbol-rs"
[INFO] [stderr]    |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 55 | repository = "https://github.com/SynBioDex/sbol-rs"
[INFO] [stderr]    |              --------------------------------------
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `sbol-cli` (manifest) generated 1 warning
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-3-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 56b8c4ac5b8d4443956a9e49355e1975b52d4924f366fa7062ffa95843a1ddd5
[INFO] running `Command { std: "docker" "start" "56b8c4ac5b8d4443956a9e49355e1975b52d4924f366fa7062ffa95843a1ddd5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "56b8c4ac5b8d4443956a9e49355e1975b52d4924f366fa7062ffa95843a1ddd5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "56b8c4ac5b8d4443956a9e49355e1975b52d4924f366fa7062ffa95843a1ddd5" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "56b8c4ac5b8d4443956a9e49355e1975b52d4924f366fa7062ffa95843a1ddd5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "56b8c4ac5b8d4443956a9e49355e1975b52d4924f366fa7062ffa95843a1ddd5" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]   --> Cargo.toml:50:12
[INFO] [stderr]    |
[INFO] [stderr] 50 | homepage = "https://github.com/SynBioDex/sbol-rs"
[INFO] [stderr]    |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 55 | repository = "https://github.com/SynBioDex/sbol-rs"
[INFO] [stderr]    |              --------------------------------------
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `sbol-cli` (manifest) generated 1 warning
[INFO] [stderr]    Compiling libc v0.2.186
[INFO] [stderr]    Compiling typenum v1.20.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling cc v1.2.62
[INFO] [stderr]    Compiling oxiri v0.2.11
[INFO] [stderr]    Compiling winnow v1.0.2
[INFO] [stderr]    Compiling oxilangtag v0.1.5
[INFO] [stderr]    Compiling toml_datetime v1.1.1+spec-1.1.0
[INFO] [stderr]    Compiling serde_spanned v1.1.1
[INFO] [stderr]    Compiling rustls-pki-types v1.14.1
[INFO] [stderr]    Compiling toml_parser v1.1.2+spec-1.1.0
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling httparse v1.10.1
[INFO] [stderr]    Compiling toml v1.1.2+spec-1.1.0
[INFO] [stderr]    Compiling quick-xml v0.37.5
[INFO] [stderr]    Compiling hybrid-array v0.4.12
[INFO] [stderr]    Compiling simd-adler32 v0.3.9
[INFO] [stderr]    Compiling json-event-parser v0.2.3
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]    Compiling rustls v0.23.40
[INFO] [stderr]    Compiling ryu-js v1.0.2
[INFO] [stderr]    Compiling getrandom v0.3.4
[INFO] [stderr]    Compiling rand_core v0.9.5
[INFO] [stderr]    Compiling ring v0.17.14
[INFO] [stderr]    Compiling getrandom v0.2.17
[INFO] [stderr]    Compiling sbol-rulegen v1.0.0
[INFO] [stderr]    Compiling rand_chacha v0.9.0
[INFO] [stderr]    Compiling http v1.4.0
[INFO] [stderr]    Compiling crypto-common v0.2.1
[INFO] [stderr]    Compiling block-buffer v0.12.0
[INFO] [stderr]    Compiling rand v0.9.4
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling generic-array v0.14.7
[INFO] [stderr]    Compiling oxrdf v0.3.3
[INFO] [stderr]    Compiling const-oid v0.10.2
[INFO] [stderr]    Compiling clap_derive v4.6.1
[INFO] [stderr]    Compiling ureq-proto v0.6.0
[INFO] [stderr]    Compiling digest v0.11.3
[INFO] [stderr]    Compiling clap_builder v4.6.0
[INFO] [stderr]    Compiling flate2 v1.1.9
[INFO] [stderr]    Compiling webpki-roots v1.0.7
[INFO] [stderr]    Compiling oxjsonld v0.2.5
[INFO] [stderr]    Compiling oxrdfxml v0.2.3
[INFO] [stderr]    Compiling oxttl v0.2.3
[INFO] [stderr]    Compiling utf8-zero v0.8.1
[INFO] [stderr]    Compiling sha2 v0.11.0
[INFO] [stderr]    Compiling oxrdfio v0.2.5
[INFO] [stderr]    Compiling sbol-rdf v1.0.0
[INFO] [stderr]    Compiling clap v4.6.1
[INFO] [stderr]    Compiling crypto-common v0.1.7
[INFO] [stderr]    Compiling block-buffer v0.10.4
[INFO] [stderr]    Compiling digest v0.10.7
[INFO] [stderr]    Compiling sbol-core v1.0.0
[INFO] [stderr]    Compiling sbol3 v1.0.0
[INFO] [stderr]    Compiling sha3 v0.10.9
[INFO] [stderr]    Compiling sbol2 v1.0.0
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]    Compiling serde_core v1.0.228
[INFO] [stderr]    Compiling nom v8.0.0
[INFO] [stderr]    Compiling circular v0.3.0
[INFO] [stderr]    Compiling bitflags v2.11.1
[INFO] [stderr]    Compiling sbol-cli v1.0.0 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling terminal_size v0.4.4
[INFO] [stderr]    Compiling serde_json v1.0.149
[INFO] [stderr]    Compiling gb-io v0.9.0
[INFO] [stderr]    Compiling rustls-webpki v0.103.13
[INFO] [stderr]    Compiling ureq v3.3.0
[INFO] [stderr]    Compiling sbol-ontology v1.0.0
[INFO] [stderr]    Compiling sbol-convert v1.0.0
[INFO] [stderr]    Compiling sbol-fasta v1.0.0
[INFO] [stderr]    Compiling sbol v1.0.0
[INFO] [stderr]    Compiling sbol-genbank v1.0.0
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 3m 43s
[INFO] running `Command { std: "docker" "inspect" "56b8c4ac5b8d4443956a9e49355e1975b52d4924f366fa7062ffa95843a1ddd5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "56b8c4ac5b8d4443956a9e49355e1975b52d4924f366fa7062ffa95843a1ddd5" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]   --> Cargo.toml:50:12
[INFO] [stderr]    |
[INFO] [stderr] 50 | homepage = "https://github.com/SynBioDex/sbol-rs"
[INFO] [stderr]    |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 55 | repository = "https://github.com/SynBioDex/sbol-rs"
[INFO] [stderr]    |              --------------------------------------
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `sbol-cli` (manifest) generated 1 warning
[INFO] [stderr]    Compiling getrandom v0.3.4
[INFO] [stderr]    Compiling getrandom v0.2.17
[INFO] [stderr]    Compiling aho-corasick v1.1.4
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]    Compiling predicates-core v1.0.10
[INFO] [stderr]    Compiling float-cmp v0.10.0
[INFO] [stderr]    Compiling assert_cmd v2.2.2
[INFO] [stderr]    Compiling wait-timeout v0.2.1
[INFO] [stderr]    Compiling ring v0.17.14
[INFO] [stderr]    Compiling predicates-tree v1.0.13
[INFO] [stderr]    Compiling fastrand v2.4.1
[INFO] [stderr]    Compiling rand_core v0.9.5
[INFO] [stderr]    Compiling rand_chacha v0.9.0
[INFO] [stderr]    Compiling rand v0.9.4
[INFO] [stderr]    Compiling oxrdf v0.3.3
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling rustls-webpki v0.103.13
[INFO] [stderr]    Compiling oxjsonld v0.2.5
[INFO] [stderr]    Compiling oxrdfxml v0.2.3
[INFO] [stderr]    Compiling oxttl v0.2.3
[INFO] [stderr]    Compiling rustls v0.23.40
[INFO] [stderr]    Compiling terminal_size v0.4.4
[INFO] [stderr]    Compiling tempfile v3.27.0
[INFO] [stderr]    Compiling oxrdfio v0.2.5
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]    Compiling sbol-rdf v1.0.0
[INFO] [stderr]    Compiling sbol-core v1.0.0
[INFO] [stderr]    Compiling predicates v3.1.4
[INFO] [stderr]    Compiling bstr v1.12.1
[INFO] [stderr]    Compiling ureq v3.3.0
[INFO] [stderr]    Compiling sbol-ontology v1.0.0
[INFO] [stderr]    Compiling sbol3 v1.0.0
[INFO] [stderr]    Compiling sbol2 v1.0.0
[INFO] [stderr]    Compiling sbol-convert v1.0.0
[INFO] [stderr]    Compiling sbol-fasta v1.0.0
[INFO] [stderr]    Compiling sbol-genbank v1.0.0
[INFO] [stderr]    Compiling sbol v1.0.0
[INFO] [stderr]    Compiling sbol-cli v1.0.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 3m 13s
[INFO] running `Command { std: "docker" "inspect" "56b8c4ac5b8d4443956a9e49355e1975b52d4924f366fa7062ffa95843a1ddd5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "56b8c4ac5b8d4443956a9e49355e1975b52d4924f366fa7062ffa95843a1ddd5" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--release", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]   --> Cargo.toml:50:12
[INFO] [stderr]    |
[INFO] [stderr] 50 | homepage = "https://github.com/SynBioDex/sbol-rs"
[INFO] [stderr]    |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 55 | repository = "https://github.com/SynBioDex/sbol-rs"
[INFO] [stderr]    |              --------------------------------------
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `sbol-cli` (manifest) generated 1 warning
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 0.24s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/release/build/sbol-cli/b40e77322606acd4/out/sbol-b40e77322606acd4)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/cli_color.rs (/opt/rustwide/target/release/build/sbol-cli/96ce6696d6ab672c/out/cli_color-96ce6696d6ab672c)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test color_never_suppresses_ansi_on_stderr_errors ... ok
[INFO] [stdout] test global_color_flag_accepted_before_subcommand ... ok
[INFO] [stdout] test error_label_is_painted_red_on_io_failure ... ok
[INFO] [stderr]      Running tests/cli_convert.rs (/opt/rustwide/target/release/build/sbol-cli/329dc252018893ba/out/cli_convert-329dc252018893ba)
[INFO] [stdout] test validate_color_always_paints_severity_label_and_error_prefix ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.13s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stdout] test convert_to_flag_overrides_output_extension_inference ... ok
[INFO] [stdout] test convert_stdout_without_to_flag_errors ... ok
[INFO] [stderr]      Running tests/cli_diff.rs (/opt/rustwide/target/release/build/sbol-cli/71857fc1ef43653c/out/cli_diff-71857fc1ef43653c)
[INFO] [stdout] test convert_ttl_to_jsonld_roundtrips_through_validator ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 3 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.09s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 8 tests
[INFO] [stdout] test json_output_carries_structured_changes ... ok
[INFO] [stdout] test changed_object_reports_property_moves ... ok
[INFO] [stdout] test identical_documents_report_no_differences ... ok
[INFO] [stdout] test missing_file_exits_two ... ok
[INFO] [stdout] test cross_version_documents_are_rejected ... ok
[INFO] [stdout] test exit_code_flag_is_zero_when_identical ... ok
[INFO] [stdout] test exit_code_flag_signals_differences ... ok
[INFO] [stdout] test without_exit_code_flag_differences_still_exit_zero ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/cli_rules_list.rs (/opt/rustwide/target/release/build/sbol-cli/80735eedcadbbf90/out/cli_rules_list-80735eedcadbbf90)
[INFO] [stdout] 
[INFO] [stdout] running 8 tests
[INFO] [stdout] test rules_list_json_parses_as_array ... ok
[INFO] [stdout] test rules_list_full_shows_complete_notes ... ok
[INFO] [stdout] test rules_list_sbol_version_2_lists_the_sbol2_catalog ... ok
[INFO] [stdout] test rules_list_color_always_emits_ansi_escapes ... ok
[INFO] [stdout] test rules_list_truncates_long_notes_by_default ... ok
[INFO] [stdout] test rules_list_status_filter_narrows_output ... ok
[INFO] [stdout] test rules_list_text_contains_known_rule_and_header ... ok
[INFO] [stdout] test rules_list_uses_columns_env_for_note_width_when_piped ... ok
[INFO] [stderr]      Running tests/cli_validate.rs (/opt/rustwide/target/release/build/sbol-cli/b658390b4d13b6c5/out/cli_validate-b658390b4d13b6c5)
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 8 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 15 tests
[INFO] [stdout] test exit_two_on_unknown_rule_id_in_override ... ok
[INFO] [stdout] test external_mode_allowed_without_cache_dir_errors ... ok
[INFO] [stdout] test exit_two_on_io_error ... ok
[INFO] [stdout] test output_file_receives_json ... ok
[INFO] [stdout] test external_mode_provided_succeeds_with_resolve_documents ... ok
[INFO] [stdout] test json_output_parses_as_json ... ok
[INFO] [stdout] test allow_flag_suppresses_diagnostic_in_output ... ok
[INFO] [stdout] test unknown_ontology_name_does_not_suggest_installing_it ... ok
[INFO] [stdout] test show_coverage_summary_appears_in_text_output ... ok
[INFO] [stdout] test sarif_output_is_available_in_the_standard_build ... ok
[INFO] [stdout] test version_flag_reports_package_version ... ok
[INFO] [stdout] test exit_one_on_error_severity_issue ... ok
[INFO] [stdout] test exit_zero_on_clean_validation ... ok
[INFO] [stdout] test text_output_prefixes_path_on_every_issue_line ... ok
[INFO] [stdout] test treat_partial_as_errors_yields_exit_code_three_on_clean_document ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 15 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.76s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/cli_validate_sbol2.rs (/opt/rustwide/target/release/build/sbol-cli/4b6f6297adfa3c30/out/cli_validate_sbol2-4b6f6297adfa3c30)
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stdout] test sbol2_json_output_uses_the_shared_report_schema ... ok
[INFO] [stdout] test sbol_version_override_forces_sbol2_validator ... ok
[INFO] [stdout] test sbol2_incomplete_fixture_passes_under_incomplete_flag ... ok
[INFO] [stdout] test sbol3_only_flags_warn_on_an_sbol2_document ... ok
[INFO] [stdout] test sbol2_incomplete_fixture_fails_under_default ... ok
[INFO] [stdout] test sbol2_turtle_fixture_validates ... ok
[INFO] [stdout] test sbol2_rdfxml_fixture_validates_through_the_sbol2_path ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 7 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.03s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/downgrade.rs (/opt/rustwide/target/release/build/sbol-cli/e41a9fdf02e6d8b0/out/downgrade-e41a9fdf02e6d8b0)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test downgrade_accepts_xml_extension_for_rdfxml_input ... ok
[INFO] [stdout] test downgrade_writes_sbol2_to_explicit_output ... ok
[INFO] [stdout] test downgrade_infers_rdfxml_output_from_xml_extension ... ok
[INFO] [stderr]      Running tests/import_fasta.rs (/opt/rustwide/target/release/build/sbol-cli/51c2edb840942911/out/import_fasta-51c2edb840942911)
[INFO] [stdout] test downgrade_from_flag_overrides_extension_inference ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 5 tests
[INFO] [stdout] test missing_namespace_is_an_error ... ok
[INFO] [stdout] test imports_protein_fasta_with_correct_type ... FAILED
[INFO] [stdout] test forced_alphabet_overrides_detection ... ok
[INFO] [stdout] test imports_dna_fasta_to_turtle ... FAILED
[INFO] [stdout] test missing_input_file_exits_two ... ok
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- imports_protein_fasta_with_correct_type stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'imports_protein_fasta_with_correct_type' (2991) panicked at tests/import_fasta.rs:60:10:
[INFO] [stdout] Unexpected failure.
[INFO] [stdout] code=2
[INFO] [stdout] stderr=```"error: failed to import /opt/tests/fixtures/fasta/GFP_protein.fasta: failed to read /opt/tests/fixtures/fasta/GFP_protein.fasta: No such file or directory (os error 2)\n"```
[INFO] [stdout] command=`"/opt/rustwide/target/release/sbol" "import-fasta" "/opt/tests/fixtures/fasta/GFP_protein.fasta" "--namespace" "https://example.org/lab" "-o" "/tmp/.tmpfbSWr3/gfp.ttl" "--validate"`
[INFO] [stdout] code=2
[INFO] [stdout] stdout=""
[INFO] [stdout] stderr="error: failed to import /opt/tests/fixtures/fasta/GFP_protein.fasta: failed to read /opt/tests/fixtures/fasta/GFP_protein.fasta: No such file or directory (os error 2)\n"
[INFO] [stdout] 
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x5e7bfe99dd01 - <<std[617be2ca0a6fd877]::sys::backtrace::BacktraceLock>::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt
[INFO] [stdout]    1:     0x5e7bfe9b482a - core[a373ad73a504971]::fmt::write
[INFO] [stdout]    2:     0x5e7bfe9a35fc - <alloc[2e1b2a31b91974c5]::vec::Vec<u8> as core[a373ad73a504971]::io::write::Write>::write_fmt
[INFO] [stdout]    3:     0x5e7bfe9781b6 - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0}
[INFO] [stdout]    4:     0x5e7bfe9956b9 - std[617be2ca0a6fd877]::panicking::default_hook
[INFO] [stdout]    5:     0x5e7bfe9202a0 - test[aada8e7e76ba119b]::test_main_inner::{closure#0}
[INFO] [stdout]    6:     0x5e7bfe995872 - std[617be2ca0a6fd877]::panicking::panic_with_hook
[INFO] [stdout]    7:     0x5e7bfe978262 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0}
[INFO] [stdout]    8:     0x5e7bfe970cc9 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace::<std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0}, !>
[INFO] [stdout]    9:     0x5e7bfe978e6d - __rustc[ea4f61d10b84890b]::rust_begin_unwind
[INFO] [stdout]   10:     0x5e7bfe9b4fdc - core[a373ad73a504971]::panicking::panic_fmt
[INFO] [stdout]   11:     0x5e7bfe9557ef - <assert_cmd[8f21ebec614bd49b]::assert::AssertError>::panic::<assert_cmd[8f21ebec614bd49b]::assert::Assert>
[INFO] [stdout]   12:     0x5e7bfe955dd9 - <assert_cmd[8f21ebec614bd49b]::assert::Assert>::success
[INFO] [stdout]   13:     0x5e7bfe911e8d - <import_fasta[5a5164a19d45f9d6]::imports_protein_fasta_with_correct_type::{closure#0} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]   14:     0x5e7bfe9136eb - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::<core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>>
[INFO] [stdout]   15:     0x5e7bfe9208c5 - test[aada8e7e76ba119b]::run_test::{closure#0}
[INFO] [stdout]   16:     0x5e7bfe91a1b4 - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace::<test[aada8e7e76ba119b]::run_test::{closure#1}, ()>
[INFO] [stdout]   17:     0x5e7bfe923952 - <std[617be2ca0a6fd877]::thread::lifecycle::spawn_unchecked<test[aada8e7e76ba119b]::run_test::{closure#1}, ()>::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0}
[INFO] [stdout]   18:     0x5e7bfe99cf9f - <std[617be2ca0a6fd877]::sys::thread::unix::Thread>::new::thread_start
[INFO] [stdout]   19:     0x797b2ab31dfa - <unknown>
[INFO] [stdout]   20:     0x797b2abc53d4 - clone
[INFO] [stdout]   21:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] ---- imports_dna_fasta_to_turtle stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'imports_dna_fasta_to_turtle' (2990) panicked at tests/import_fasta.rs:34:10:
[INFO] [stdout] Unexpected failure.
[INFO] [stdout] code=2
[INFO] [stdout] stderr=```"error: failed to import /opt/tests/fixtures/fasta/pUC19.fasta: failed to read /opt/tests/fixtures/fasta/pUC19.fasta: No such file or directory (os error 2)\n"```
[INFO] [stdout] command=`"/opt/rustwide/target/release/sbol" "import-fasta" "/opt/tests/fixtures/fasta/pUC19.fasta" "--namespace" "https://example.org/lab" "-o" "/tmp/.tmpGCQoz2/pUC19.ttl"`
[INFO] [stdout] code=2
[INFO] [stdout] stdout=""
[INFO] [stdout] stderr="error: failed to import /opt/tests/fixtures/fasta/pUC19.fasta: failed to read /opt/tests/fixtures/fasta/pUC19.fasta: No such file or directory (os error 2)\n"
[INFO] [stdout] 
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x5e7bfe99dd01 - <<std[617be2ca0a6fd877]::sys::backtrace::BacktraceLock>::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt
[INFO] [stdout]    1:     0x5e7bfe9b482a - core[a373ad73a504971]::fmt::write
[INFO] [stdout]    2:     0x5e7bfe9a35fc - <alloc[2e1b2a31b91974c5]::vec::Vec<u8> as core[a373ad73a504971]::io::write::Write>::write_fmt
[INFO] [stdout]    3:     0x5e7bfe9781b6 - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0}
[INFO] [stdout]    4:     0x5e7bfe9956b9 - std[617be2ca0a6fd877]::panicking::default_hook
[INFO] [stdout]    5:     0x5e7bfe9202a0 - test[aada8e7e76ba119b]::test_main_inner::{closure#0}
[INFO] [stdout]    6:     0x5e7bfe995872 - std[617be2ca0a6fd877]::panicking::panic_with_hook
[INFO] [stdout]    7:     0x5e7bfe978262 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0}
[INFO] [stdout]    8:     0x5e7bfe970cc9 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace::<std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0}, !>
[INFO] [stdout]    9:     0x5e7bfe978e6d - __rustc[ea4f61d10b84890b]::rust_begin_unwind
[INFO] [stdout]   10:     0x5e7bfe9b4fdc - core[a373ad73a504971]::panicking::panic_fmt
[INFO] [stdout]   11:     0x5e7bfe9557ef - <assert_cmd[8f21ebec614bd49b]::assert::AssertError>::panic::<assert_cmd[8f21ebec614bd49b]::assert::Assert>
[INFO] [stdout]   12:     0x5e7bfe955dd9 - <assert_cmd[8f21ebec614bd49b]::assert::Assert>::success
[INFO] [stdout]   13:     0x5e7bfe910d26 - <import_fasta[5a5164a19d45f9d6]::imports_dna_fasta_to_turtle::{closure#0} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]   14:     0x5e7bfe9136eb - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::<core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>>
[INFO] [stdout]   15:     0x5e7bfe9208c5 - test[aada8e7e76ba119b]::run_test::{closure#0}
[INFO] [stdout]   16:     0x5e7bfe91a1b4 - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace::<test[aada8e7e76ba119b]::run_test::{closure#1}, ()>
[INFO] [stdout]   17:     0x5e7bfe923952 - <std[617be2ca0a6fd877]::thread::lifecycle::spawn_unchecked<test[aada8e7e76ba119b]::run_test::{closure#1}, ()>::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0}
[INFO] [stdout]   18:     0x5e7bfe99cf9f - <std[617be2ca0a6fd877]::sys::thread::unix::Thread>::new::thread_start
[INFO] [stdout]   19:     0x797b2ab31dfa - <unknown>
[INFO] [stdout]   20:     0x797b2abc53d4 - clone
[INFO] [stdout]   21:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     imports_dna_fasta_to_turtle
[INFO] [stdout]     imports_protein_fasta_with_correct_type
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 3 passed; 2 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass `--test import_fasta`
[INFO] running `Command { std: "docker" "inspect" "56b8c4ac5b8d4443956a9e49355e1975b52d4924f366fa7062ffa95843a1ddd5", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "56b8c4ac5b8d4443956a9e49355e1975b52d4924f366fa7062ffa95843a1ddd5", kill_on_drop: false }`
[INFO] [stdout] 56b8c4ac5b8d4443956a9e49355e1975b52d4924f366fa7062ffa95843a1ddd5
