[INFO] fetching crate rsomics-bed 0.1.0...
[INFO] testing rsomics-bed-0.1.0 against 1.100.0-beta.1+cargoflags=--release for beta-release-1.100-2
[INFO] extracting crate rsomics-bed 0.1.0 into /workspace/builds/worker-0-tc2/source
[INFO] started tweaking crates.io crate rsomics-bed 0.1.0
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate rsomics-bed 0.1.0
[INFO] tweaked toml for crates.io crate rsomics-bed 0.1.0 written to /workspace/builds/worker-0-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate rsomics-bed 0.1.0 on toolchain 1.100.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate rsomics-bed 0.1.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]   --> Cargo.toml:57:12
[INFO] [stderr]    |
[INFO] [stderr] 57 | homepage = "https://github.com/omics-rust/rsomics-bed"
[INFO] [stderr]    |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 62 | repository = "https://github.com/omics-rust/rsomics-bed"
[INFO] [stderr]    |              -------------------------------------------
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `rsomics-bed` (manifest) generated 1 warning
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-0-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] a56f0c8fef4be5715e00a9b550232bae86dcca523928ab3537e21ceef67e73fb
[INFO] running `Command { std: "docker" "start" "a56f0c8fef4be5715e00a9b550232bae86dcca523928ab3537e21ceef67e73fb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a56f0c8fef4be5715e00a9b550232bae86dcca523928ab3537e21ceef67e73fb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "a56f0c8fef4be5715e00a9b550232bae86dcca523928ab3537e21ceef67e73fb" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "a56f0c8fef4be5715e00a9b550232bae86dcca523928ab3537e21ceef67e73fb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "a56f0c8fef4be5715e00a9b550232bae86dcca523928ab3537e21ceef67e73fb" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]   --> Cargo.toml:57:12
[INFO] [stderr]    |
[INFO] [stderr] 57 | homepage = "https://github.com/omics-rust/rsomics-bed"
[INFO] [stderr]    |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 62 | repository = "https://github.com/omics-rust/rsomics-bed"
[INFO] [stderr]    |              -------------------------------------------
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `rsomics-bed` (manifest) generated 1 warning
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]    Compiling thiserror v2.0.19
[INFO] [stderr]    Compiling coitrees v0.4.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.19
[INFO] [stderr]    Compiling getrandom v0.4.3
[INFO] [stderr]    Compiling rsomics-intervals v0.3.0
[INFO] [stderr]    Compiling terminal_size v0.4.4
[INFO] [stderr]    Compiling tempfile v3.27.0
[INFO] [stderr]    Compiling clap_builder v4.6.2
[INFO] [stderr]    Compiling clap v4.6.4
[INFO] [stderr]    Compiling rsomics-help v0.4.0
[INFO] [stderr]    Compiling rsomics-common v0.7.0
[INFO] [stderr]    Compiling rsomics-bed v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 17.06s
[INFO] running `Command { std: "docker" "inspect" "a56f0c8fef4be5715e00a9b550232bae86dcca523928ab3537e21ceef67e73fb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "a56f0c8fef4be5715e00a9b550232bae86dcca523928ab3537e21ceef67e73fb" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]   --> Cargo.toml:57:12
[INFO] [stderr]    |
[INFO] [stderr] 57 | homepage = "https://github.com/omics-rust/rsomics-bed"
[INFO] [stderr]    |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 62 | repository = "https://github.com/omics-rust/rsomics-bed"
[INFO] [stderr]    |              -------------------------------------------
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `rsomics-bed` (manifest) generated 1 warning
[INFO] [stderr]    Compiling zerocopy v0.8.55
[INFO] [stderr]    Compiling syn v2.0.119
[INFO] [stderr]    Compiling serde_json v1.0.151
[INFO] [stderr]    Compiling regex-automata v0.4.16
[INFO] [stderr]    Compiling criterion-plot v0.6.0
[INFO] [stderr]    Compiling serde v1.0.229
[INFO] [stderr]    Compiling rsomics-common v0.7.0
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling rsomics-bed v0.1.0 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling regex v1.13.1
[INFO] [stderr]    Compiling zerocopy-derive v0.8.55
[INFO] [stderr]    Compiling half v2.7.1
[INFO] [stderr]    Compiling ciborium-ll v0.2.2
[INFO] [stderr]    Compiling ciborium v0.2.2
[INFO] [stderr]    Compiling criterion v0.7.0
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 37.94s
[INFO] running `Command { std: "docker" "inspect" "a56f0c8fef4be5715e00a9b550232bae86dcca523928ab3537e21ceef67e73fb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "a56f0c8fef4be5715e00a9b550232bae86dcca523928ab3537e21ceef67e73fb" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--release", kill_on_drop: false }`
[INFO] [stderr] warning: `package.homepage` is redundant with `package.repository`
[INFO] [stderr]   --> Cargo.toml:57:12
[INFO] [stderr]    |
[INFO] [stderr] 57 | homepage = "https://github.com/omics-rust/rsomics-bed"
[INFO] [stderr]    |            ^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^^
[INFO] [stderr] ...
[INFO] [stderr] 62 | repository = "https://github.com/omics-rust/rsomics-bed"
[INFO] [stderr]    |              -------------------------------------------
[INFO] [stderr]    |
[INFO] [stderr]    = note: `cargo::redundant_homepage` is set to `warn` by default
[INFO] [stderr] help: consider removing `package.homepage`
[INFO] [stderr] warning: `rsomics-bed` (manifest) generated 1 warning
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 0.10s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/release/build/rsomics-bed/2053286ce3376e35/out/rsomics_bed-2053286ce3376e35)
[INFO] [stdout] 
[INFO] [stdout] running 40 tests
[INFO] [stdout] test bed::tests::parser_preserves_trailing_columns ... ok
[INFO] [stdout] test bed::tests::browser_and_track_prefixes_are_skipped_like_bedtools ... ok
[INFO] [stdout] test cli::tests::global_options_are_limited_to_shared_output ... ok
[INFO] [stdout] test cli::tests::complement_rejects_two_stdin_consumers ... ok
[INFO] [stdout] test bed::tests::genome_rejects_duplicates ... ok
[INFO] [stdout] test bed::tests::parser_reports_physical_line_number ... ok
[INFO] [stdout] test cli::tests::command_tree_is_valid ... ok
[INFO] [stdout] test cli::tests::json_requires_named_bed_output ... ok
[INFO] [stdout] test cli::tests::nested_help_is_owned_by_clap ... ok
[INFO] [stdout] test merge::tests::later_origin_zero_length_record_does_not_require_negative_output ... ok
[INFO] [stdout] test intersect::tests::maximum_backend_coordinate_is_supported ... ok
[INFO] [stdout] test intersect::tests::first_unrepresentable_a_query_coordinate_is_rejected ... ok
[INFO] [stdout] test intersect::tests::zero_length_b_uses_bedtools_virtual_footprint ... ok
[INFO] [stdout] test intersect::tests::first_unrepresentable_backend_coordinate_is_rejected ... ok
[INFO] [stdout] test merge::tests::first_zero_length_record_defines_the_widened_cluster_start ... ok
[INFO] [stdout] test merge::tests::later_zero_length_record_does_not_move_cluster_start_backwards ... ok
[INFO] [stdout] test cli::tests::output_cannot_alias_input_through_path_normalization ... ok
[INFO] [stdout] test merge::tests::maximum_zero_length_interval_fails_before_widening ... ok
[INFO] [stdout] test complement::tests::emits_missing_chromosomes ... ok
[INFO] [stdout] test complement::tests::interval_beyond_chromosome_fails ... ok
[INFO] [stdout] test cli::tests::output_cannot_alias_input_through_hard_link ... ok
[INFO] [stdout] test intersect::tests::maximum_safe_zero_length_b_candidate_is_supported ... ok
[INFO] [stdout] test subtract::tests::maximum_zero_length_coordinate_fails_before_widening ... ok
[INFO] [stdout] test intersect::tests::duplicate_b_coordinates_preserve_multiplicity_and_file_order ... ok
[INFO] [stdout] test subtract::tests::zero_length_a_uses_union_of_adjacent_zero_b_virtual_coverage ... ok
[INFO] [stdout] test subtract::tests::overlapping_b_intervals_emit_each_gap_once ... ok
[INFO] [stdout] test subtract::tests::zero_length_a_uses_union_of_zero_and_nonzero_b_virtual_coverage ... ok
[INFO] [stdout] test subtract::tests::zero_length_b_removes_virtual_footprint ... ok
[INFO] [stdout] test subtract::tests::zero_length_a_at_nonzero_b_boundaries_is_preserved ... ok
[INFO] [stdout] test cli::tests::output_cannot_alias_input ... ok
[INFO] [stdout] test intersect::tests::emits_hits_in_b_file_order ... ok
[INFO] [stdout] test sort::tests::stable_sort_preserves_columns_and_equal_key_order ... ok
[INFO] [stdout] test subtract::tests::nonzero_coordinates_beyond_the_interval_backend_are_supported ... ok
[INFO] [stdout] test subtract::tests::zero_length_a_is_removed_only_by_zero_b_at_same_position ... ok
[INFO] [stdout] test subtract::tests::zero_length_a_between_touching_b_intervals_is_removed ... ok
[INFO] [stdout] test merge::tests::origin_zero_length_interval_fails_instead_of_emitting_negative_bed ... ok
[INFO] [stdout] test subtract::tests::zero_length_a_is_preserved_only_without_overlap ... ok
[INFO] [stdout] test merge::tests::touching_and_zero_length_records_merge ... ok
[INFO] [stdout] test merge::tests::unsorted_cluster_fails_loud ... ok
[INFO] [stdout] test subtract::tests::maximum_nonzero_u64_coordinates_are_supported ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 40 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/release/build/rsomics-bed/6fe52f78108f9bf3/out/rsomics_bed-6fe52f78108f9bf3)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/cli.rs (/opt/rustwide/target/release/build/rsomics-bed/a00513ef77237678/out/cli-a00513ef77237678)
[INFO] [stdout] 
[INFO] [stdout] running 12 tests
[INFO] [stdout] test symlink_output_alias_is_rejected_without_following_and_truncating_target ... ok
[INFO] [stdout] test product_binary_dispatches_sort ... ok
[INFO] [stdout] test io_errors_use_the_stable_io_exit_code ... ok
[INFO] [stdout] test complement_rejects_dual_stdin_before_reading ... ok
[INFO] [stdout] test json_with_bed_stdout_fails_as_configuration_without_mixed_stdout ... ok
[INFO] [stdout] test replacing_named_output_preserves_existing_permissions ... ok
[INFO] [stdout] test invalid_input_exits_nonzero_with_context ... ok
[INFO] [stdout] test top_level_and_nested_help_render ... ok
[INFO] [stdout] test json_is_separate_from_named_bed_output ... ok
[INFO] [stdout] test named_output_is_transactional_on_failure ... ok
[INFO] [stdout] test all_existing_output_alias_forms_are_rejected_without_data_loss ... ok
[INFO] [stderr]      Running tests/compat.rs (/opt/rustwide/target/release/build/rsomics-bed/26e16f38c0c2392b/out/compat-26e16f38c0c2392b)
[INFO] [stdout] test new_named_output_uses_normal_umask_permissions ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 12 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 3 tests
[INFO] [stdout] test committed_golden_outputs_match ... ok
[INFO] [stdout] test inherited_failure_fixtures_fail_loud ... ok
[INFO] [stdout] test live_bedtools_231_compatibility ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- live_bedtools_231_compatibility stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'live_bedtools_231_compatibility' (1029) panicked at tests/compat.rs:177:10:
[INFO] [stdout] bedtools 2.31.1 is required for the compatibility lane: Os { code: 2, kind: NotFound, message: "No such file or directory" }
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x60eb387d6c91 - <<std[617be2ca0a6fd877]::sys::backtrace::BacktraceLock>::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt
[INFO] [stdout]    1:     0x60eb387eac5a - core[a373ad73a504971]::fmt::write
[INFO] [stdout]    2:     0x60eb387daeac - <alloc[2e1b2a31b91974c5]::vec::Vec<u8> as core[a373ad73a504971]::io::write::Write>::write_fmt
[INFO] [stdout]    3:     0x60eb387b2b56 - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0}
[INFO] [stdout]    4:     0x60eb387cf019 - std[617be2ca0a6fd877]::panicking::default_hook
[INFO] [stdout]    5:     0x60eb38761920 - test[aada8e7e76ba119b]::test_main_inner::{closure#0}
[INFO] [stdout]    6:     0x60eb387cf1d2 - std[617be2ca0a6fd877]::panicking::panic_with_hook
[INFO] [stdout]    7:     0x60eb387b2c02 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0}
[INFO] [stdout]    8:     0x60eb387ab789 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace::<std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0}, !>
[INFO] [stdout]    9:     0x60eb387b380d - __rustc[ea4f61d10b84890b]::rust_begin_unwind
[INFO] [stdout]   10:     0x60eb387eb38c - core[a373ad73a504971]::panicking::panic_fmt
[INFO] [stdout]   11:     0x60eb387eb162 - core[a373ad73a504971]::result::unwrap_failed
[INFO] [stdout]   12:     0x60eb3874022c - <compat[69c4bc1122b72fad]::live_bedtools_231_compatibility::{closure#0} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]   13:     0x60eb38754d6b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::<core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>>
[INFO] [stdout]   14:     0x60eb38761f45 - test[aada8e7e76ba119b]::run_test::{closure#0}
[INFO] [stdout]   15:     0x60eb3875b834 - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace::<test[aada8e7e76ba119b]::run_test::{closure#1}, ()>
[INFO] [stdout]   16:     0x60eb38764fd2 - <std[617be2ca0a6fd877]::thread::lifecycle::spawn_unchecked<test[aada8e7e76ba119b]::run_test::{closure#1}, ()>::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0}
[INFO] [stdout]   17:     0x60eb387d61df - <std[617be2ca0a6fd877]::sys::thread::unix::Thread>::new::thread_start
[INFO] [stdout]   18:     0x7b87f5901dfa - <unknown>
[INFO] [stdout]   19:     0x7b87f59953d4 - clone
[INFO] [stdout]   20:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     live_bedtools_231_compatibility
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 2 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass `--test compat`
[INFO] running `Command { std: "docker" "inspect" "a56f0c8fef4be5715e00a9b550232bae86dcca523928ab3537e21ceef67e73fb", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "a56f0c8fef4be5715e00a9b550232bae86dcca523928ab3537e21ceef67e73fb", kill_on_drop: false }`
[INFO] [stdout] a56f0c8fef4be5715e00a9b550232bae86dcca523928ab3537e21ceef67e73fb
