[INFO] fetching crate mafft-io 0.2.0...
[INFO] testing mafft-io-0.2.0 against 1.99.0-beta.8+cargoflags=--release for beta-release-1.100-2
[INFO] extracting crate mafft-io 0.2.0 into /workspace/builds/worker-5-tc1/source
[INFO] started tweaking crates.io crate mafft-io 0.2.0
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate mafft-io 0.2.0
[INFO] tweaked toml for crates.io crate mafft-io 0.2.0 written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate mafft-io 0.2.0 on toolchain 1.99.0-beta.8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate mafft-io 0.2.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-core v0.15.0
[INFO] [stderr]   Downloaded mafft-types v0.2.0
[INFO] [stderr]   Downloaded fastrand v2.4.0
[INFO] [stderr]   Downloaded noodles-fasta v0.46.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.34.0
[INFO] [stderr]   Downloaded mafft-scoring v0.2.0
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] aa9d7c96ad0822c827b50eeed12c99bf05204ddb7167fc44534693396b0cddc6
[INFO] running `Command { std: "docker" "start" "aa9d7c96ad0822c827b50eeed12c99bf05204ddb7167fc44534693396b0cddc6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "aa9d7c96ad0822c827b50eeed12c99bf05204ddb7167fc44534693396b0cddc6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "aa9d7c96ad0822c827b50eeed12c99bf05204ddb7167fc44534693396b0cddc6" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "aa9d7c96ad0822c827b50eeed12c99bf05204ddb7167fc44534693396b0cddc6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "aa9d7c96ad0822c827b50eeed12c99bf05204ddb7167fc44534693396b0cddc6" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling num-traits v0.2.19
[INFO] [stderr]    Compiling crc32fast v1.5.0
[INFO] [stderr]    Compiling simd-adler32 v0.3.9
[INFO] [stderr]    Compiling memchr v2.8.0
[INFO] [stderr]    Compiling crossbeam-channel v0.5.15
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling bstr v1.12.1
[INFO] [stderr]    Compiling flate2 v1.1.9
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling noodles-core v0.15.0
[INFO] [stderr]    Compiling noodles-bgzf v0.34.0
[INFO] [stderr]    Compiling noodles-fasta v0.46.0
[INFO] [stderr]    Compiling mafft-types v0.2.0
[INFO] [stderr]    Compiling mafft-scoring v0.2.0
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]    Compiling mafft-io v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 16.15s
[INFO] running `Command { std: "docker" "inspect" "aa9d7c96ad0822c827b50eeed12c99bf05204ddb7167fc44534693396b0cddc6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "aa9d7c96ad0822c827b50eeed12c99bf05204ddb7167fc44534693396b0cddc6" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.184
[INFO] [stderr]    Compiling getrandom v0.4.2
[INFO] [stderr]    Compiling rustix v1.1.4
[INFO] [stderr]    Compiling bitflags v2.11.0
[INFO] [stderr]    Compiling fastrand v2.4.0
[INFO] [stderr]    Compiling once_cell v1.21.4
[INFO] [stderr]    Compiling tempfile v3.27.0
[INFO] [stderr]    Compiling mafft-io v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 10.83s
[INFO] running `Command { std: "docker" "inspect" "aa9d7c96ad0822c827b50eeed12c99bf05204ddb7167fc44534693396b0cddc6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "aa9d7c96ad0822c827b50eeed12c99bf05204ddb7167fc44534693396b0cddc6" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "test" "--frozen" "--release", kill_on_drop: false }`
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 0.12s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/release/deps/mafft_io-94ff2c2e3d4cac12)
[INFO] [stdout] 
[INFO] [stdout] running 29 tests
[INFO] [stdout] test detect::tests::detects_dna ... ok
[INFO] [stdout] test detect::tests::detects_protein ... ok
[INFO] [stdout] test detect::tests::empty_is_unknown ... ok
[INFO] [stdout] test clustal::tests::header_includes_strategy_comment ... ok
[INFO] [stdout] test clustal::tests::marks_space_for_gap_column ... ok
[INFO] [stdout] test clustal::tests::clustal_output_format ... ok
[INFO] [stdout] test fasta::in_memory_helper_tests::case_convention_check_matches_apply ... ok
[INFO] [stdout] test clustal::tests::marks_star_for_full_identity_column ... ok
[INFO] [stdout] test clustal::tests::marks_weak_group_protein ... ok
[INFO] [stdout] test clustal::tests::marks_strong_group_protein ... ok
[INFO] [stdout] test clustal::tests::name_field_truncates_overlong_names ... ok
[INFO] [stdout] test fasta::tests::apply_case_convention_is_idempotent_and_follows_seq_type ... ok
[INFO] [stdout] test fasta::tests::case_fold_does_not_disturb_type_detection ... ok
[INFO] [stdout] test fasta::tests::handles_mafft_style_headers ... ok
[INFO] [stdout] test fasta::tests::protein_input_is_uppercased_whatever_the_input_case ... ok
[INFO] [stdout] test fasta::tests::normalize_strips_and_converts ... ok
[INFO] [stdout] test hat2::tests::self_distance_is_zero ... ok
[INFO] [stdout] test localhom::tests::roundtrip_localhom ... ok
[INFO] [stdout] test fasta::in_memory_helper_tests::detect_accepts_borrowed_rows ... ok
[INFO] [stdout] test fasta::tests::roundtrip_fasta ... ok
[INFO] [stdout] test phylip::tests::phylip_header ... ok
[INFO] [stdout] test fasta::in_memory_helper_tests::normalize_residues_matches_the_readers ... ok
[INFO] [stdout] test fasta::tests::nucleotide_input_is_lowercased_whatever_the_input_case ... ok
[INFO] [stdout] test seqcheck::tests::unknown_type_uses_the_protein_alphabet ... ok
[INFO] [stdout] test fasta::in_memory_helper_tests::residues_are_normalized_iff_normalize_is_identity ... ok
[INFO] [stderr]      Running tests/integration.rs (/opt/rustwide/target/release/deps/integration-d1dd17ec1e01ef9b)
[INFO] [stdout] test seqcheck::tests::nucleotide_alphabet_is_c_locaminon ... ok
[INFO] [stdout] test fasta::tests::casepreserve_reader_keeps_the_input_case ... ok
[INFO] [stdout] test seqcheck::tests::protein_alphabet_is_c_locaminod ... ok
[INFO] [stdout] test hat2::tests::roundtrip_hat2 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 29 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 7 tests
[INFO] [stderr] error: test failed, to rerun pass `--test integration`
[INFO] [stdout] test read_sample_fasta ... FAILED
[INFO] [stdout] test read_rna_sample ... FAILED
[INFO] [stdout] test fasta_roundtrip_preserves_content ... FAILED
[INFO] [stdout] test clustal_output_has_correct_structure ... FAILED
[INFO] [stdout] test detect_nucleotide_from_rna_sample ... FAILED
[INFO] [stdout] test detect_protein_from_sample ... FAILED
[INFO] [stdout] test phylip_output_has_correct_header ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- read_sample_fasta stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'read_sample_fasta' (632) panicked at tests/integration.rs:17:53:
[INFO] [stdout] called `Result::unwrap()` on an `Err` value: Io(Os { code: 2, kind: NotFound, message: "No such file or directory" })
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x6329a0c8a671 - <<std[70759c8f55707aa4]::sys::backtrace::BacktraceLock>::print::DisplayBacktrace as core[df12db4294e9bfd3]::fmt::Display>::fmt
[INFO] [stdout]    1:     0x6329a0c9e94a - core[df12db4294e9bfd3]::fmt::write
[INFO] [stdout]    2:     0x6329a0c8eb0c - <alloc[2182bb758b4b3781]::vec::Vec<u8> as core[df12db4294e9bfd3]::io::write::Write>::write_fmt
[INFO] [stdout]    3:     0x6329a0c66ad6 - std[70759c8f55707aa4]::panicking::default_hook::{closure#0}
[INFO] [stdout]    4:     0x6329a0c82dd9 - std[70759c8f55707aa4]::panicking::default_hook
[INFO] [stdout]    5:     0x6329a0c1e9f0 - test[9d35eded1c95d3be]::test_main_inner::<test[9d35eded1c95d3be]::test_main_static::{closure#0}>::{closure#0}
[INFO] [stdout]    6:     0x6329a0c82f92 - std[70759c8f55707aa4]::panicking::panic_with_hook
[INFO] [stdout]    7:     0x6329a0c66b82 - std[70759c8f55707aa4]::panicking::panic_handler::{closure#0}
[INFO] [stdout]    8:     0x6329a0c5f909 - std[70759c8f55707aa4]::sys::backtrace::__rust_end_short_backtrace::<std[70759c8f55707aa4]::panicking::panic_handler::{closure#0}, !>
[INFO] [stdout]    9:     0x6329a0c6777d - __rustc[8fa7c3cbc660c2b3]::rust_begin_unwind
[INFO] [stdout]   10:     0x6329a0c9f07c - core[df12db4294e9bfd3]::panicking::panic_fmt
[INFO] [stdout]   11:     0x6329a0c9ee52 - core[df12db4294e9bfd3]::result::unwrap_failed
[INFO] [stdout]   12:     0x6329a0c0c372 - <integration[6a42cf830278d6c3]::read_sample_fasta::{closure#0} as core[df12db4294e9bfd3]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]   13:     0x6329a0c11cdb - test[9d35eded1c95d3be]::__rust_begin_short_backtrace::<core[df12db4294e9bfd3]::result::Result<(), alloc[2182bb758b4b3781]::string::String>, fn() -> core[df12db4294e9bfd3]::result::Result<(), alloc[2182bb758b4b3781]::string::String>>
[INFO] [stdout]   14:     0x6329a0c1f345 - test[9d35eded1c95d3be]::run_test::{closure#0}
[INFO] [stdout]   15:     0x6329a0c18c04 - std[70759c8f55707aa4]::sys::backtrace::__rust_begin_short_backtrace::<test[9d35eded1c95d3be]::run_test::{closure#1}, ()>
[INFO] [stdout]   16:     0x6329a0c224a2 - <std[70759c8f55707aa4]::thread::lifecycle::spawn_unchecked<test[9d35eded1c95d3be]::run_test::{closure#1}, ()>::{closure#1} as core[df12db4294e9bfd3]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0}
[INFO] [stdout]   17:     0x6329a0c89f49 - <std[70759c8f55707aa4]::sys::thread::unix::Thread>::new::thread_start
[INFO] [stdout]   18:     0x7db301777dfa - <unknown>
[INFO] [stdout]   19:     0x7db30180b3d4 - clone
[INFO] [stdout]   20:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] ---- read_rna_sample stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'read_rna_sample' (631) panicked at tests/integration.rs:49:56:
[INFO] [stdout] called `Result::unwrap()` on an `Err` value: Io(Os { code: 2, kind: NotFound, message: "No such file or directory" })
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x6329a0c8a671 - <<std[70759c8f55707aa4]::sys::backtrace::BacktraceLock>::print::DisplayBacktrace as core[df12db4294e9bfd3]::fmt::Display>::fmt
[INFO] [stdout]    1:     0x6329a0c9e94a - core[df12db4294e9bfd3]::fmt::write
[INFO] [stdout]    2:     0x6329a0c8eb0c - <alloc[2182bb758b4b3781]::vec::Vec<u8> as core[df12db4294e9bfd3]::io::write::Write>::write_fmt
[INFO] [stdout]    3:     0x6329a0c66ad6 - std[70759c8f55707aa4]::panicking::default_hook::{closure#0}
[INFO] [stdout]    4:     0x6329a0c82dd9 - std[70759c8f55707aa4]::panicking::default_hook
[INFO] [stdout]    5:     0x6329a0c1e9f0 - test[9d35eded1c95d3be]::test_main_inner::<test[9d35eded1c95d3be]::test_main_static::{closure#0}>::{closure#0}
[INFO] [stdout]    6:     0x6329a0c82f92 - std[70759c8f55707aa4]::panicking::panic_with_hook
[INFO] [stdout]    7:     0x6329a0c66b82 - std[70759c8f55707aa4]::panicking::panic_handler::{closure#0}
[INFO] [stdout]    8:     0x6329a0c5f909 - std[70759c8f55707aa4]::sys::backtrace::__rust_end_short_backtrace::<std[70759c8f55707aa4]::panicking::panic_handler::{closure#0}, !>
[INFO] [stdout]    9:     0x6329a0c6777d - __rustc[8fa7c3cbc660c2b3]::rust_begin_unwind
[INFO] [stdout]   10:     0x6329a0c9f07c - core[df12db4294e9bfd3]::panicking::panic_fmt
[INFO] [stdout]   11:     0x6329a0c9ee52 - core[df12db4294e9bfd3]::result::unwrap_failed
[INFO] [stdout]   12:     0x6329a0c0bea5 - <integration[6a42cf830278d6c3]::read_rna_sample::{closure#0} as core[df12db4294e9bfd3]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]   13:     0x6329a0c11cdb - test[9d35eded1c95d3be]::__rust_begin_short_backtrace::<core[df12db4294e9bfd3]::result::Result<(), alloc[2182bb758b4b3781]::string::String>, fn() -> core[df12db4294e9bfd3]::result::Result<(), alloc[2182bb758b4b3781]::string::String>>
[INFO] [stdout]   14:     0x6329a0c1f345 - test[9d35eded1c95d3be]::run_test::{closure#0}
[INFO] [stdout]   15:     0x6329a0c18c04 - std[70759c8f55707aa4]::sys::backtrace::__rust_begin_short_backtrace::<test[9d35eded1c95d3be]::run_test::{closure#1}, ()>
[INFO] [stdout]   16:     0x6329a0c224a2 - <std[70759c8f55707aa4]::thread::lifecycle::spawn_unchecked<test[9d35eded1c95d3be]::run_test::{closure#1}, ()>::{closure#1} as core[df12db4294e9bfd3]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0}
[INFO] [stdout]   17:     0x6329a0c89f49 - <std[70759c8f55707aa4]::sys::thread::unix::Thread>::new::thread_start
[INFO] [stdout]   18:     0x7db301777dfa - <unknown>
[INFO] [stdout]   19:     0x7db30180b3d4 - clone
[INFO] [stdout]   20:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] ---- fasta_roundtrip_preserves_content stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'fasta_roundtrip_preserves_content' (629) panicked at tests/integration.rs:62:57:
[INFO] [stdout] called `Result::unwrap()` on an `Err` value: Io(Os { code: 2, kind: NotFound, message: "No such file or directory" })
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x6329a0c8a671 - <<std[70759c8f55707aa4]::sys::backtrace::BacktraceLock>::print::DisplayBacktrace as core[df12db4294e9bfd3]::fmt::Display>::fmt
[INFO] [stdout]    1:     0x6329a0c9e94a - core[df12db4294e9bfd3]::fmt::write
[INFO] [stdout]    2:     0x6329a0c8eb0c - <alloc[2182bb758b4b3781]::vec::Vec<u8> as core[df12db4294e9bfd3]::io::write::Write>::write_fmt
[INFO] [stdout]    3:     0x6329a0c66ad6 - std[70759c8f55707aa4]::panicking::default_hook::{closure#0}
[INFO] [stdout]    4:     0x6329a0c82dd9 - std[70759c8f55707aa4]::panicking::default_hook
[INFO] [stdout]    5:     0x6329a0c1e9f0 - test[9d35eded1c95d3be]::test_main_inner::<test[9d35eded1c95d3be]::test_main_static::{closure#0}>::{closure#0}
[INFO] [stdout]    6:     0x6329a0c82f92 - std[70759c8f55707aa4]::panicking::panic_with_hook
[INFO] [stdout]    7:     0x6329a0c66b82 - std[70759c8f55707aa4]::panicking::panic_handler::{closure#0}
[INFO] [stdout]    8:     0x6329a0c5f909 - std[70759c8f55707aa4]::sys::backtrace::__rust_end_short_backtrace::<std[70759c8f55707aa4]::panicking::panic_handler::{closure#0}, !>
[INFO] [stdout]    9:     0x6329a0c6777d - __rustc[8fa7c3cbc660c2b3]::rust_begin_unwind
[INFO] [stdout]   10:     0x6329a0c9f07c - core[df12db4294e9bfd3]::panicking::panic_fmt
[INFO] [stdout]   11:     0x6329a0c9ee52 - core[df12db4294e9bfd3]::result::unwrap_failed
[INFO] [stdout]   12:     0x6329a0c0d72d - <integration[6a42cf830278d6c3]::fasta_roundtrip_preserves_content::{closure#0} as core[df12db4294e9bfd3]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]   13:     0x6329a0c11cdb - test[9d35eded1c95d3be]::__rust_begin_short_backtrace::<core[df12db4294e9bfd3]::result::Result<(), alloc[2182bb758b4b3781]::string::String>, fn() -> core[df12db4294e9bfd3]::result::Result<(), alloc[2182bb758b4b3781]::string::String>>
[INFO] [stdout]   14:     0x6329a0c1f345 - test[9d35eded1c95d3be]::run_test::{closure#0}
[INFO] [stdout]   15:     0x6329a0c18c04 - std[70759c8f55707aa4]::sys::backtrace::__rust_begin_short_backtrace::<test[9d35eded1c95d3be]::run_test::{closure#1}, ()>
[INFO] [stdout]   16:     0x6329a0c224a2 - <std[70759c8f55707aa4]::thread::lifecycle::spawn_unchecked<test[9d35eded1c95d3be]::run_test::{closure#1}, ()>::{closure#1} as core[df12db4294e9bfd3]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0}
[INFO] [stdout]   17:     0x6329a0c89f49 - <std[70759c8f55707aa4]::sys::thread::unix::Thread>::new::thread_start
[INFO] [stdout]   18:     0x7db301777dfa - <unknown>
[INFO] [stdout]   19:     0x7db30180b3d4 - clone
[INFO] [stdout]   20:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] ---- clustal_output_has_correct_structure stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'clustal_output_has_correct_structure' (626) panicked at tests/integration.rs:79:53:
[INFO] [stdout] called `Result::unwrap()` on an `Err` value: Io(Os { code: 2, kind: NotFound, message: "No such file or directory" })
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x6329a0c8a671 - <<std[70759c8f55707aa4]::sys::backtrace::BacktraceLock>::print::DisplayBacktrace as core[df12db4294e9bfd3]::fmt::Display>::fmt
[INFO] [stdout]    1:     0x6329a0c9e94a - core[df12db4294e9bfd3]::fmt::write
[INFO] [stdout]    2:     0x6329a0c8eb0c - <alloc[2182bb758b4b3781]::vec::Vec<u8> as core[df12db4294e9bfd3]::io::write::Write>::write_fmt
[INFO] [stdout]    3:     0x6329a0c66ad6 - std[70759c8f55707aa4]::panicking::default_hook::{closure#0}
[INFO] [stdout]    4:     0x6329a0c82dd9 - std[70759c8f55707aa4]::panicking::default_hook
[INFO] [stdout]    5:     0x6329a0c1e9f0 - test[9d35eded1c95d3be]::test_main_inner::<test[9d35eded1c95d3be]::test_main_static::{closure#0}>::{closure#0}
[INFO] [stdout]    6:     0x6329a0c82f92 - std[70759c8f55707aa4]::panicking::panic_with_hook
[INFO] [stdout]    7:     0x6329a0c66b82 - std[70759c8f55707aa4]::panicking::panic_handler::{closure#0}
[INFO] [stdout]    8:     0x6329a0c5f909 - std[70759c8f55707aa4]::sys::backtrace::__rust_end_short_backtrace::<std[70759c8f55707aa4]::panicking::panic_handler::{closure#0}, !>
[INFO] [stdout]    9:     0x6329a0c6777d - __rustc[8fa7c3cbc660c2b3]::rust_begin_unwind
[INFO] [stdout]   10:     0x6329a0c9f07c - core[df12db4294e9bfd3]::panicking::panic_fmt
[INFO] [stdout]   11:     0x6329a0c9ee52 - core[df12db4294e9bfd3]::result::unwrap_failed
[INFO] [stdout]   12:     0x6329a0c0dd7b - <integration[6a42cf830278d6c3]::clustal_output_has_correct_structure::{closure#0} as core[df12db4294e9bfd3]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]   13:     0x6329a0c11cdb - test[9d35eded1c95d3be]::__rust_begin_short_backtrace::<core[df12db4294e9bfd3]::result::Result<(), alloc[2182bb758b4b3781]::string::String>, fn() -> core[df12db4294e9bfd3]::result::Result<(), alloc[2182bb758b4b3781]::string::String>>
[INFO] [stdout]   14:     0x6329a0c1f345 - test[9d35eded1c95d3be]::run_test::{closure#0}
[INFO] [stdout]   15:     0x6329a0c18c04 - std[70759c8f55707aa4]::sys::backtrace::__rust_begin_short_backtrace::<test[9d35eded1c95d3be]::run_test::{closure#1}, ()>
[INFO] [stdout]   16:     0x6329a0c224a2 - <std[70759c8f55707aa4]::thread::lifecycle::spawn_unchecked<test[9d35eded1c95d3be]::run_test::{closure#1}, ()>::{closure#1} as core[df12db4294e9bfd3]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0}
[INFO] [stdout]   17:     0x6329a0c89f49 - <std[70759c8f55707aa4]::sys::thread::unix::Thread>::new::thread_start
[INFO] [stdout]   18:     0x7db301777dfa - <unknown>
[INFO] [stdout]   19:     0x7db30180b3d4 - clone
[INFO] [stdout]   20:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] ---- detect_nucleotide_from_rna_sample stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'detect_nucleotide_from_rna_sample' (627) panicked at tests/integration.rs:128:56:
[INFO] [stdout] called `Result::unwrap()` on an `Err` value: Io(Os { code: 2, kind: NotFound, message: "No such file or directory" })
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x6329a0c8a671 - <<std[70759c8f55707aa4]::sys::backtrace::BacktraceLock>::print::DisplayBacktrace as core[df12db4294e9bfd3]::fmt::Display>::fmt
[INFO] [stdout]    1:     0x6329a0c9e94a - core[df12db4294e9bfd3]::fmt::write
[INFO] [stdout]    2:     0x6329a0c8eb0c - <alloc[2182bb758b4b3781]::vec::Vec<u8> as core[df12db4294e9bfd3]::io::write::Write>::write_fmt
[INFO] [stdout]    3:     0x6329a0c66ad6 - std[70759c8f55707aa4]::panicking::default_hook::{closure#0}
[INFO] [stdout]    4:     0x6329a0c82dd9 - std[70759c8f55707aa4]::panicking::default_hook
[INFO] [stdout]    5:     0x6329a0c1e9f0 - test[9d35eded1c95d3be]::test_main_inner::<test[9d35eded1c95d3be]::test_main_static::{closure#0}>::{closure#0}
[INFO] [stdout]    6:     0x6329a0c82f92 - std[70759c8f55707aa4]::panicking::panic_with_hook
[INFO] [stdout]    7:     0x6329a0c66b82 - std[70759c8f55707aa4]::panicking::panic_handler::{closure#0}
[INFO] [stdout]    8:     0x6329a0c5f909 - std[70759c8f55707aa4]::sys::backtrace::__rust_end_short_backtrace::<std[70759c8f55707aa4]::panicking::panic_handler::{closure#0}, !>
[INFO] [stdout]    9:     0x6329a0c6777d - __rustc[8fa7c3cbc660c2b3]::rust_begin_unwind
[INFO] [stdout]   10:     0x6329a0c9f07c - core[df12db4294e9bfd3]::panicking::panic_fmt
[INFO] [stdout]   11:     0x6329a0c9ee52 - core[df12db4294e9bfd3]::result::unwrap_failed
[INFO] [stdout]   12:     0x6329a0c0d3c6 - <integration[6a42cf830278d6c3]::detect_nucleotide_from_rna_sample::{closure#0} as core[df12db4294e9bfd3]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]   13:     0x6329a0c11cdb - test[9d35eded1c95d3be]::__rust_begin_short_backtrace::<core[df12db4294e9bfd3]::result::Result<(), alloc[2182bb758b4b3781]::string::String>, fn() -> core[df12db4294e9bfd3]::result::Result<(), alloc[2182bb758b4b3781]::string::String>>
[INFO] [stdout]   14:     0x6329a0c1f345 - test[9d35eded1c95d3be]::run_test::{closure#0}
[INFO] [stdout]   15:     0x6329a0c18c04 - std[70759c8f55707aa4]::sys::backtrace::__rust_begin_short_backtrace::<test[9d35eded1c95d3be]::run_test::{closure#1}, ()>
[INFO] [stdout]   16:     0x6329a0c224a2 - <std[70759c8f55707aa4]::thread::lifecycle::spawn_unchecked<test[9d35eded1c95d3be]::run_test::{closure#1}, ()>::{closure#1} as core[df12db4294e9bfd3]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0}
[INFO] [stdout]   17:     0x6329a0c89f49 - <std[70759c8f55707aa4]::sys::thread::unix::Thread>::new::thread_start
[INFO] [stdout]   18:     0x7db301777dfa - <unknown>
[INFO] [stdout]   19:     0x7db30180b3d4 - clone
[INFO] [stdout]   20:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] ---- detect_protein_from_sample stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'detect_protein_from_sample' (628) panicked at tests/integration.rs:121:53:
[INFO] [stdout] called `Result::unwrap()` on an `Err` value: Io(Os { code: 2, kind: NotFound, message: "No such file or directory" })
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x6329a0c8a671 - <<std[70759c8f55707aa4]::sys::backtrace::BacktraceLock>::print::DisplayBacktrace as core[df12db4294e9bfd3]::fmt::Display>::fmt
[INFO] [stdout]    1:     0x6329a0c9e94a - core[df12db4294e9bfd3]::fmt::write
[INFO] [stdout]    2:     0x6329a0c8eb0c - <alloc[2182bb758b4b3781]::vec::Vec<u8> as core[df12db4294e9bfd3]::io::write::Write>::write_fmt
[INFO] [stdout]    3:     0x6329a0c66ad6 - std[70759c8f55707aa4]::panicking::default_hook::{closure#0}
[INFO] [stdout]    4:     0x6329a0c82dd9 - std[70759c8f55707aa4]::panicking::default_hook
[INFO] [stdout]    5:     0x6329a0c1e9f0 - test[9d35eded1c95d3be]::test_main_inner::<test[9d35eded1c95d3be]::test_main_static::{closure#0}>::{closure#0}
[INFO] [stdout]    6:     0x6329a0c82f92 - std[70759c8f55707aa4]::panicking::panic_with_hook
[INFO] [stdout]    7:     0x6329a0c66b82 - std[70759c8f55707aa4]::panicking::panic_handler::{closure#0}
[INFO] [stdout]    8:     0x6329a0c5f909 - std[70759c8f55707aa4]::sys::backtrace::__rust_end_short_backtrace::<std[70759c8f55707aa4]::panicking::panic_handler::{closure#0}, !>
[INFO] [stdout]    9:     0x6329a0c6777d - __rustc[8fa7c3cbc660c2b3]::rust_begin_unwind
[INFO] [stdout]   10:     0x6329a0c9f07c - core[df12db4294e9bfd3]::panicking::panic_fmt
[INFO] [stdout]   11:     0x6329a0c9ee52 - core[df12db4294e9bfd3]::result::unwrap_failed
[INFO] [stdout]   12:     0x6329a0c0c8ea - <integration[6a42cf830278d6c3]::detect_protein_from_sample::{closure#0} as core[df12db4294e9bfd3]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]   13:     0x6329a0c11cdb - test[9d35eded1c95d3be]::__rust_begin_short_backtrace::<core[df12db4294e9bfd3]::result::Result<(), alloc[2182bb758b4b3781]::string::String>, fn() -> core[df12db4294e9bfd3]::result::Result<(), alloc[2182bb758b4b3781]::string::String>>
[INFO] [stdout]   14:     0x6329a0c1f345 - test[9d35eded1c95d3be]::run_test::{closure#0}
[INFO] [stdout]   15:     0x6329a0c18c04 - std[70759c8f55707aa4]::sys::backtrace::__rust_begin_short_backtrace::<test[9d35eded1c95d3be]::run_test::{closure#1}, ()>
[INFO] [stdout]   16:     0x6329a0c224a2 - <std[70759c8f55707aa4]::thread::lifecycle::spawn_unchecked<test[9d35eded1c95d3be]::run_test::{closure#1}, ()>::{closure#1} as core[df12db4294e9bfd3]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0}
[INFO] [stdout]   17:     0x6329a0c89f49 - <std[70759c8f55707aa4]::sys::thread::unix::Thread>::new::thread_start
[INFO] [stdout]   18:     0x7db301777dfa - <unknown>
[INFO] [stdout]   19:     0x7db30180b3d4 - clone
[INFO] [stdout]   20:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] ---- phylip_output_has_correct_header stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'phylip_output_has_correct_header' (630) panicked at tests/integration.rs:102:53:
[INFO] [stdout] called `Result::unwrap()` on an `Err` value: Io(Os { code: 2, kind: NotFound, message: "No such file or directory" })
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x6329a0c8a671 - <<std[70759c8f55707aa4]::sys::backtrace::BacktraceLock>::print::DisplayBacktrace as core[df12db4294e9bfd3]::fmt::Display>::fmt
[INFO] [stdout]    1:     0x6329a0c9e94a - core[df12db4294e9bfd3]::fmt::write
[INFO] [stdout]    2:     0x6329a0c8eb0c - <alloc[2182bb758b4b3781]::vec::Vec<u8> as core[df12db4294e9bfd3]::io::write::Write>::write_fmt
[INFO] [stdout]    3:     0x6329a0c66ad6 - std[70759c8f55707aa4]::panicking::default_hook::{closure#0}
[INFO] [stdout]    4:     0x6329a0c82dd9 - std[70759c8f55707aa4]::panicking::default_hook
[INFO] [stdout]    5:     0x6329a0c1e9f0 - test[9d35eded1c95d3be]::test_main_inner::<test[9d35eded1c95d3be]::test_main_static::{closure#0}>::{closure#0}
[INFO] [stdout]    6:     0x6329a0c82f92 - std[70759c8f55707aa4]::panicking::panic_with_hook
[INFO] [stdout]    7:     0x6329a0c66b82 - std[70759c8f55707aa4]::panicking::panic_handler::{closure#0}
[INFO] [stdout]    8:     0x6329a0c5f909 - std[70759c8f55707aa4]::sys::backtrace::__rust_end_short_backtrace::<std[70759c8f55707aa4]::panicking::panic_handler::{closure#0}, !>
[INFO] [stdout]    9:     0x6329a0c6777d - __rustc[8fa7c3cbc660c2b3]::rust_begin_unwind
[INFO] [stdout]   10:     0x6329a0c9f07c - core[df12db4294e9bfd3]::panicking::panic_fmt
[INFO] [stdout]   11:     0x6329a0c9ee52 - core[df12db4294e9bfd3]::result::unwrap_failed
[INFO] [stdout]   12:     0x6329a0c0cebd - <integration[6a42cf830278d6c3]::phylip_output_has_correct_header::{closure#0} as core[df12db4294e9bfd3]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]   13:     0x6329a0c11cdb - test[9d35eded1c95d3be]::__rust_begin_short_backtrace::<core[df12db4294e9bfd3]::result::Result<(), alloc[2182bb758b4b3781]::string::String>, fn() -> core[df12db4294e9bfd3]::result::Result<(), alloc[2182bb758b4b3781]::string::String>>
[INFO] [stdout]   14:     0x6329a0c1f345 - test[9d35eded1c95d3be]::run_test::{closure#0}
[INFO] [stdout]   15:     0x6329a0c18c04 - std[70759c8f55707aa4]::sys::backtrace::__rust_begin_short_backtrace::<test[9d35eded1c95d3be]::run_test::{closure#1}, ()>
[INFO] [stdout]   16:     0x6329a0c224a2 - <std[70759c8f55707aa4]::thread::lifecycle::spawn_unchecked<test[9d35eded1c95d3be]::run_test::{closure#1}, ()>::{closure#1} as core[df12db4294e9bfd3]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0}
[INFO] [stdout]   17:     0x6329a0c89f49 - <std[70759c8f55707aa4]::sys::thread::unix::Thread>::new::thread_start
[INFO] [stdout]   18:     0x7db301777dfa - <unknown>
[INFO] [stdout]   19:     0x7db30180b3d4 - clone
[INFO] [stdout]   20:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     clustal_output_has_correct_structure
[INFO] [stdout]     detect_nucleotide_from_rna_sample
[INFO] [stdout]     detect_protein_from_sample
[INFO] [stdout]     fasta_roundtrip_preserves_content
[INFO] [stdout]     phylip_output_has_correct_header
[INFO] [stdout]     read_rna_sample
[INFO] [stdout]     read_sample_fasta
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 0 passed; 7 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.01s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "aa9d7c96ad0822c827b50eeed12c99bf05204ddb7167fc44534693396b0cddc6", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "aa9d7c96ad0822c827b50eeed12c99bf05204ddb7167fc44534693396b0cddc6", kill_on_drop: false }`
[INFO] [stdout] aa9d7c96ad0822c827b50eeed12c99bf05204ddb7167fc44534693396b0cddc6
