[INFO] fetching crate hashrope-bio 0.2.0...
[INFO] testing hashrope-bio-0.2.0 against 1.100.0-beta.1+cargoflags=--release for beta-release-1.100-2
[INFO] extracting crate hashrope-bio 0.2.0 into /workspace/builds/worker-6-tc2/source
[INFO] started tweaking crates.io crate hashrope-bio 0.2.0
[INFO] finished tweaking crates.io crate hashrope-bio 0.2.0
[INFO] tweaked toml for crates.io crate hashrope-bio 0.2.0 written to /workspace/builds/worker-6-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate hashrope-bio 0.2.0 on toolchain 1.100.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate hashrope-bio 0.2.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-6-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] e3fefee4b25dcaebe3f6ff6fad9a1a5f257eb3fc42dfc43ce16cedb850cca5df
[INFO] running `Command { std: "docker" "start" "e3fefee4b25dcaebe3f6ff6fad9a1a5f257eb3fc42dfc43ce16cedb850cca5df", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e3fefee4b25dcaebe3f6ff6fad9a1a5f257eb3fc42dfc43ce16cedb850cca5df", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "e3fefee4b25dcaebe3f6ff6fad9a1a5f257eb3fc42dfc43ce16cedb850cca5df" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "e3fefee4b25dcaebe3f6ff6fad9a1a5f257eb3fc42dfc43ce16cedb850cca5df", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "e3fefee4b25dcaebe3f6ff6fad9a1a5f257eb3fc42dfc43ce16cedb850cca5df" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling hashrope v0.2.1
[INFO] [stderr]    Compiling hashrope-bio v0.2.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `Write`
[INFO] [stdout]   --> src/bin/bench_construction_g4.rs:11:35
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::io::{BufRead, BufReader, Write};
[INFO] [stdout]    |                                   ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::path::PathBuf`
[INFO] [stdout]   --> src/bin/bench_construction_g4.rs:12:5
[INFO] [stdout]    |
[INFO] [stdout] 12 | use std::path::PathBuf;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/bin/bench_construction_g4.rs:145:9
[INFO] [stdout]     |
[INFO] [stdout] 145 |     let mut verify_arena = Arena::new();
[INFO] [stdout]     |         ----^^^^^^^^^^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/bin/bench_construction_g4.rs:474:13
[INFO] [stdout]     |
[INFO] [stdout] 474 |         let mut arena = Arena::new();
[INFO] [stdout]     |             ----^^^^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `DEFAULT_CHUNK_SIZES` is never used
[INFO] [stdout]   --> src/bin/bench_construction_g4.rs:22:7
[INFO] [stdout]    |
[INFO] [stdout] 22 | const DEFAULT_CHUNK_SIZES: &[usize] = &[256, 1024, 4096, 16384];
[INFO] [stdout]    |       ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 4.10s
[INFO] running `Command { std: "docker" "inspect" "e3fefee4b25dcaebe3f6ff6fad9a1a5f257eb3fc42dfc43ce16cedb850cca5df", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "e3fefee4b25dcaebe3f6ff6fad9a1a5f257eb3fc42dfc43ce16cedb850cca5df" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.184
[INFO] [stderr]    Compiling plotters-backend v0.3.7
[INFO] [stderr]    Compiling regex-syntax v0.8.10
[INFO] [stderr]    Compiling clap_builder v4.6.0
[INFO] [stderr]    Compiling itertools v0.10.5
[INFO] [stderr]    Compiling cast v0.3.0
[INFO] [stderr]    Compiling anes v0.1.6
[INFO] [stderr]    Compiling oorandom v11.1.5
[INFO] [stderr]    Compiling syn v2.0.117
[INFO] [stderr]    Compiling serde_json v1.0.149
[INFO] [stderr]    Compiling plotters-svg v0.3.7
[INFO] [stderr]    Compiling plotters v0.3.7
[INFO] [stderr]    Compiling is-terminal v0.4.17
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling criterion-plot v0.5.0
[INFO] [stderr]    Compiling zerocopy-derive v0.8.48
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling clap v4.6.0
[INFO] [stderr]    Compiling zerocopy v0.8.48
[INFO] [stderr]    Compiling regex v1.12.3
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling half v2.7.1
[INFO] [stderr]    Compiling ciborium-ll v0.2.2
[INFO] [stderr]    Compiling ciborium v0.2.2
[INFO] [stderr]    Compiling criterion v0.5.1
[INFO] [stderr]    Compiling hashrope-bio v0.2.0 (/opt/rustwide/workdir)
[INFO] [stdout] warning: unused import: `Write`
[INFO] [stdout]   --> src/bin/bench_construction_g4.rs:11:35
[INFO] [stdout]    |
[INFO] [stdout] 11 | use std::io::{BufRead, BufReader, Write};
[INFO] [stdout]    |                                   ^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: unused import: `std::path::PathBuf`
[INFO] [stdout]   --> src/bin/bench_construction_g4.rs:12:5
[INFO] [stdout]    |
[INFO] [stdout] 12 | use std::path::PathBuf;
[INFO] [stdout]    |     ^^^^^^^^^^^^^^^^^^
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/bin/bench_construction_g4.rs:145:9
[INFO] [stdout]     |
[INFO] [stdout] 145 |     let mut verify_arena = Arena::new();
[INFO] [stdout]     |         ----^^^^^^^^^^^^
[INFO] [stdout]     |         |
[INFO] [stdout]     |         help: remove this `mut`
[INFO] [stdout]     |
[INFO] [stdout]     = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: variable does not need to be mutable
[INFO] [stdout]    --> src/bin/bench_construction_g4.rs:474:13
[INFO] [stdout]     |
[INFO] [stdout] 474 |         let mut arena = Arena::new();
[INFO] [stdout]     |             ----^^^^^
[INFO] [stdout]     |             |
[INFO] [stdout]     |             help: remove this `mut`
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] warning: constant `DEFAULT_CHUNK_SIZES` is never used
[INFO] [stdout]   --> src/bin/bench_construction_g4.rs:22:7
[INFO] [stdout]    |
[INFO] [stdout] 22 | const DEFAULT_CHUNK_SIZES: &[usize] = &[256, 1024, 4096, 16384];
[INFO] [stdout]    |       ^^^^^^^^^^^^^^^^^^^
[INFO] [stdout]    |
[INFO] [stdout]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 39.72s
[INFO] running `Command { std: "docker" "inspect" "e3fefee4b25dcaebe3f6ff6fad9a1a5f257eb3fc42dfc43ce16cedb850cca5df", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "e3fefee4b25dcaebe3f6ff6fad9a1a5f257eb3fc42dfc43ce16cedb850cca5df" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--release", kill_on_drop: false }`
[INFO] [stderr] warning: unused import: `Write`
[INFO] [stderr]   --> src/bin/bench_construction_g4.rs:11:35
[INFO] [stderr]    |
[INFO] [stderr] 11 | use std::io::{BufRead, BufReader, Write};
[INFO] [stderr]    |                                   ^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(unused_imports)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: unused import: `std::path::PathBuf`
[INFO] [stderr]   --> src/bin/bench_construction_g4.rs:12:5
[INFO] [stderr]    |
[INFO] [stderr] 12 | use std::path::PathBuf;
[INFO] [stderr]    |     ^^^^^^^^^^^^^^^^^^
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/bin/bench_construction_g4.rs:145:9
[INFO] [stderr]     |
[INFO] [stderr] 145 |     let mut verify_arena = Arena::new();
[INFO] [stderr]     |         ----^^^^^^^^^^^^
[INFO] [stderr]     |         |
[INFO] [stderr]     |         help: remove this `mut`
[INFO] [stderr]     |
[INFO] [stderr]     = note: `#[warn(unused_mut)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: variable does not need to be mutable
[INFO] [stderr]    --> src/bin/bench_construction_g4.rs:474:13
[INFO] [stderr]     |
[INFO] [stderr] 474 |         let mut arena = Arena::new();
[INFO] [stderr]     |             ----^^^^^
[INFO] [stderr]     |             |
[INFO] [stderr]     |             help: remove this `mut`
[INFO] [stderr] 
[INFO] [stderr] warning: constant `DEFAULT_CHUNK_SIZES` is never used
[INFO] [stderr]   --> src/bin/bench_construction_g4.rs:22:7
[INFO] [stderr]    |
[INFO] [stderr] 22 | const DEFAULT_CHUNK_SIZES: &[usize] = &[256, 1024, 4096, 16384];
[INFO] [stderr]    |       ^^^^^^^^^^^^^^^^^^^
[INFO] [stderr]    |
[INFO] [stderr]    = note: `#[warn(dead_code)]` (part of `#[warn(unused)]`) on by default
[INFO] [stderr] 
[INFO] [stderr] warning: `hashrope-bio` (bin "bench_construction_g4" test) generated 5 warnings (run `cargo fix --bin "bench_construction_g4" -p hashrope-bio --tests` to apply 4 suggestions)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 0.10s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/release/build/hashrope-bio/b5406ba8f44db50c/out/hashrope_bio-b5406ba8f44db50c)
[INFO] [stdout] 
[INFO] [stdout] running 10 tests
[INFO] [stdout] test gene_diff::tests::test_mutation_detected_in_correct_gene ... ok
[INFO] [stdout] test gene_diff::tests::test_identical_no_changes ... ok
[INFO] [stdout] test gene_diff::tests::test_mutation_detected_in_correct_exon ... ok
[INFO] [stdout] test gene::tests::test_synthetic_gene_deterministic ... ok
[INFO] [stdout] test resistance::tests::test_no_mutations_detected_on_identical ... ok
[INFO] [stdout] test resistance::tests::test_byte_baseline_agrees_with_hashrope ... ok
[INFO] [stdout] test resistance::tests::test_panel_detects_mutations ... ok
[INFO] [stdout] test gene_diff::tests::test_summary ... ok
[INFO] [stdout] test gene::tests::test_mutate_codon ... ok
[INFO] [stderr]      Running unittests src/bin/bench_construction_g4.rs (/opt/rustwide/target/release/build/hashrope-bio/3311f8803fcd26b2/out/bench_construction_g4-3311f8803fcd26b2)
[INFO] [stdout] test gene_diff::tests::test_screen_genes ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 10 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/bench_mutation_g3.rs (/opt/rustwide/target/release/build/hashrope-bio/9feb914302d220f8/out/bench_mutation_g3-9feb914302d220f8)
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/bench_mutation_g3_clinvar.rs (/opt/rustwide/target/release/build/hashrope-bio/6654a92431a67134/out/bench_mutation_g3_clinvar-6654a92431a67134)
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/bench_region_query_g1.rs (/opt/rustwide/target/release/build/hashrope-bio/1b789f49803b64d9/out/bench_region_query_g1-1b789f49803b64d9)
[INFO] [stdout] 
[INFO] [stderr]      Running unittests src/bin/bench_region_query_g1_genes.rs (/opt/rustwide/target/release/build/hashrope-bio/3eab544a460626c9/out/bench_region_query_g1_genes-3eab544a460626c9)
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]    Doc-tests hashrope_bio
[INFO] [stdout] 
[INFO] [stdout] running 0 tests
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test src/gene_diff.rs - gene_diff (line 14) - compile ... FAILED
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- src/gene_diff.rs - gene_diff (line 14) stdout ----
[INFO] [stdout] error[E0499]: cannot borrow `arena` as mutable more than once at a time
[INFO] [stdout]   --> src/gene_diff.rs:23:47
[INFO] [stdout]    |
[INFO] [stdout] 23 | let report = diff_genes(&mut arena, ref_rope, &mut arena, sample_rope, &genes, None);
[INFO] [stdout]    |              ---------- ----------            ^^^^^^^^^^ second mutable borrow occurs here
[INFO] [stdout]    |              |          |
[INFO] [stdout]    |              |          first mutable borrow occurs here
[INFO] [stdout]    |              first borrow later used by call
[INFO] [stdout] 
[INFO] [stdout] error: aborting due to 1 previous error
[INFO] [stdout] 
[INFO] [stdout] For more information about this error, try `rustc --explain E0499`.
[INFO] [stdout] Couldn't compile the test.
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     src/gene_diff.rs - gene_diff (line 14)
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 0 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.07s
[INFO] [stdout] 
[INFO] [stderr] error: doctest failed, to rerun pass `--doc`
[INFO] running `Command { std: "docker" "inspect" "e3fefee4b25dcaebe3f6ff6fad9a1a5f257eb3fc42dfc43ce16cedb850cca5df", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "e3fefee4b25dcaebe3f6ff6fad9a1a5f257eb3fc42dfc43ce16cedb850cca5df", kill_on_drop: false }`
[INFO] [stdout] e3fefee4b25dcaebe3f6ff6fad9a1a5f257eb3fc42dfc43ce16cedb850cca5df
