[INFO] fetching crate gta-core 0.2.0...
[INFO] testing gta-core-0.2.0 against 1.99.0-beta.8+cargoflags=--release for beta-release-1.100-2
[INFO] extracting crate gta-core 0.2.0 into /workspace/builds/worker-5-tc1/source
[INFO] started tweaking crates.io crate gta-core 0.2.0
[INFO] removed 0 missing examples
[INFO] finished tweaking crates.io crate gta-core 0.2.0
[INFO] tweaked toml for crates.io crate gta-core 0.2.0 written to /workspace/builds/worker-5-tc1/source/Cargo.toml
[INFO] validating manifest of crates.io crate gta-core 0.2.0 on toolchain 1.99.0-beta.8
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate gta-core 0.2.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.99.0-beta.8" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Updating crates.io index
[INFO] [stderr]  Downloading crates ...
[INFO] [stderr]   Downloaded noodles-tabix v0.62.0
[INFO] [stderr]   Downloaded noodles-core v0.20.0
[INFO] [stderr]   Downloaded noodles v0.111.0
[INFO] [stderr]   Downloaded noodles-csi v0.56.0
[INFO] [stderr]   Downloaded noodles-gtf v0.52.0
[INFO] [stderr]   Downloaded noodles-gff v0.57.0
[INFO] [stderr]   Downloaded noodles-fasta v0.62.0
[INFO] [stderr]   Downloaded noodles-vcf v0.88.0
[INFO] [stderr]   Downloaded derefable v0.1.0
[INFO] [stderr]   Downloaded noodles-bgzf v0.47.0
[INFO] [stderr]   Downloaded bio v3.0.0
[INFO] [stderr]   Downloaded libz-ng-sys v1.1.29
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc1/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] ec6c59ceddb81f0936ea4b46b731f5c166423537ee3f9088f37dcb3ab8c36b94
[INFO] running `Command { std: "docker" "start" "ec6c59ceddb81f0936ea4b46b731f5c166423537ee3f9088f37dcb3ab8c36b94", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ec6c59ceddb81f0936ea4b46b731f5c166423537ee3f9088f37dcb3ab8c36b94", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "ec6c59ceddb81f0936ea4b46b731f5c166423537ee3f9088f37dcb3ab8c36b94" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "ec6c59ceddb81f0936ea4b46b731f5c166423537ee3f9088f37dcb3ab8c36b94", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "ec6c59ceddb81f0936ea4b46b731f5c166423537ee3f9088f37dcb3ab8c36b94" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling syn v2.0.118
[INFO] [stderr]    Compiling zlib-rs v0.6.4
[INFO] [stderr]    Compiling bit-vec v0.9.1
[INFO] [stderr]    Compiling aho-corasick v1.1.4
[INFO] [stderr]    Compiling cc v1.2.65
[INFO] [stderr]    Compiling typenum v1.20.1
[INFO] [stderr]    Compiling crossbeam-channel v0.5.15
[INFO] [stderr]    Compiling unicode-segmentation v1.13.3
[INFO] [stderr]    Compiling const-oid v0.10.2
[INFO] [stderr]    Compiling anyhow v1.0.103
[INFO] [stderr]    Compiling zerocopy v0.8.52
[INFO] [stderr]    Compiling fixedbitset v0.5.7
[INFO] [stderr]    Compiling either v1.16.0
[INFO] [stderr]    Compiling serde_json v1.0.150
[INFO] [stderr]    Compiling rayon v1.12.0
[INFO] [stderr]    Compiling convert_case v0.10.0
[INFO] [stderr]    Compiling cmake v0.1.58
[INFO] [stderr]    Compiling hybrid-array v0.4.12
[INFO] [stderr]    Compiling libz-ng-sys v1.1.29
[INFO] [stderr]    Compiling regex-automata v0.4.14
[INFO] [stderr]    Compiling block-buffer v0.12.1
[INFO] [stderr]    Compiling crypto-common v0.2.2
[INFO] [stderr]    Compiling digest v0.11.3
[INFO] [stderr]    Compiling sha2 v0.11.0
[INFO] [stderr]    Compiling noodles-bgzf v0.47.0
[INFO] [stderr]    Compiling darling_core v0.23.0
[INFO] [stderr]    Compiling prettyplease v0.2.37
[INFO] [stderr]    Compiling serde_derive v1.0.228
[INFO] [stderr]    Compiling thiserror-impl v2.0.18
[INFO] [stderr]    Compiling tracing-attributes v0.1.31
[INFO] [stderr]    Compiling derive_more-impl v2.1.1
[INFO] [stderr]    Compiling bstr v1.12.3
[INFO] [stderr]    Compiling regex v1.12.4
[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]    Compiling noodles-core v0.20.0
[INFO] [stderr]    Compiling thiserror v2.0.18
[INFO] [stderr]    Compiling tracing v0.1.44
[INFO] [stderr]    Compiling noodles-csi v0.56.0
[INFO] [stderr]    Compiling noodles-fasta v0.62.0
[INFO] [stderr]    Compiling noodles-gff v0.57.0
[INFO] [stderr]    Compiling noodles-tabix v0.62.0
[INFO] [stderr]    Compiling noodles-vcf v0.88.0
[INFO] [stderr]    Compiling noodles-gtf v0.52.0
[INFO] [stderr]    Compiling darling_macro v0.23.0
[INFO] [stderr]    Compiling serde v1.0.228
[INFO] [stderr]    Compiling darling v0.23.0
[INFO] [stderr]    Compiling bon-macros v3.9.3
[INFO] [stderr]    Compiling petgraph v0.8.3
[INFO] [stderr]    Compiling derive_more v2.1.1
[INFO] [stderr]    Compiling bon v3.9.3
[INFO] [stderr]    Compiling noodles v0.111.0
[INFO] [stderr]    Compiling flate2 v1.1.9
[INFO] [stderr]    Compiling gta-core v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 1m 13s
[INFO] running `Command { std: "docker" "inspect" "ec6c59ceddb81f0936ea4b46b731f5c166423537ee3f9088f37dcb3ab8c36b94", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "ec6c59ceddb81f0936ea4b46b731f5c166423537ee3f9088f37dcb3ab8c36b94" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling zerocopy v0.8.52
[INFO] [stderr]    Compiling zerocopy-derive v0.8.52
[INFO] [stderr]    Compiling alloca v0.4.0
[INFO] [stderr]    Compiling rayon v1.12.0
[INFO] [stderr]    Compiling clap_builder v4.6.0
[INFO] [stderr]    Compiling criterion-plot v0.8.2
[INFO] [stderr]    Compiling plotters v0.3.7
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling page_size v0.6.0
[INFO] [stderr]    Compiling clap v4.6.1
[INFO] [stderr]    Compiling half v2.7.1
[INFO] [stderr]    Compiling ahash v0.8.12
[INFO] [stderr]    Compiling gta-core v0.2.0 (/opt/rustwide/workdir)
[INFO] [stderr]    Compiling ciborium-ll v0.2.2
[INFO] [stderr]    Compiling ciborium v0.2.2
[INFO] [stderr]    Compiling criterion v0.8.2
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 50.72s
[INFO] running `Command { std: "docker" "inspect" "ec6c59ceddb81f0936ea4b46b731f5c166423537ee3f9088f37dcb3ab8c36b94", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "ec6c59ceddb81f0936ea4b46b731f5c166423537ee3f9088f37dcb3ab8c36b94" "/opt/rustwide/cargo-home/bin/cargo" "+1.99.0-beta.8" "test" "--frozen" "--release", kill_on_drop: false }`
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 0.20s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/release/deps/tsg_core-8e635e251d09cc54)
[INFO] [stdout] 
[INFO] [stdout] running 57 tests
[INFO] [stdout] test graph::analysis::graph::tests::test_is_cyclic ... ok
[INFO] [stdout] test graph::analysis::graph::tests::test_proper_bubble_detection ... ok
[INFO] [stdout] test graph::analysis::graph::tests::test_summarize ... ok
[INFO] [stdout] test graph::analysis::graph::tests::test_is_connected ... ok
[INFO] [stdout] test graph::analysis::path::tests::test_is_super_without_common_reads ... ok
[INFO] [stdout] test graph::analysis::path::tests::test_tsr_from_path_attribute_float ... ok
[INFO] [stdout] test graph::analysis::path::tests::test_tsr_no_sr_attributes ... ok
[INFO] [stdout] test graph::analysis::path::tests::test_tsr_single_node_path ... ok
[INFO] [stdout] test graph::analysis::traverse::tests::test_generic_traverse ... ok
[INFO] [stdout] test graph::analysis::graph::tests::test_summarize_paths_with_annotation ... ok
[INFO] [stdout] test graph::analysis::graph::tests::test_summarize_paths_with_tsr ... ok
[INFO] [stdout] test graph::analysis::path::tests::test_is_super_from_real_example ... ok
[INFO] [stdout] test graph::analysis::graph::tests::test_summarize_paths_interchrom ... ok
[INFO] [stdout] test graph::analysis::path::tests::test_tsr_from_real_example ... ok
[INFO] [stdout] test graph::analysis::path::tests::test_is_super_with_single_node ... ok
[INFO] [stdout] test graph::analysis::path::tests::test_tsr_from_path_attribute ... ok
[INFO] [stdout] test graph::attr::tests::test_attribute_from_str_invalid_format ... ok
[INFO] [stdout] test graph::node::tests::test_exons_first_last ... ok
[INFO] [stdout] test graph::attr::tests::test_attribute_as_json ... ok
[INFO] [stdout] test graph::node::tests::test_exons_introns ... ok
[INFO] [stdout] test graph::analysis::path::tests::test_is_super_with_common_reads ... ok
[INFO] [stdout] test graph::attr::tests::test_attribute_as_string ... ok
[INFO] [stdout] test graph::attr::tests::test_attribute_from_str_invalid_type ... ok
[INFO] [stdout] test graph::attr::tests::test_attribute_from_str_valid ... ok
[INFO] [stdout] test graph::node::tests::test_node_to_gtf ... ok
[INFO] [stdout] test graph::attr::tests::test_attribute_as_float ... ok
[INFO] [stdout] test graph::node::tests::test_exons_span ... ok
[INFO] [stdout] test graph::attr::tests::test_attribute_as_int ... ok
[INFO] [stdout] test graph::tests::test_add_node ... ok
[INFO] [stdout] test graph::node::tests::test_node_from_str ... ok
[INFO] [stdout] test graph::analysis::traverse::tests::test_read_guided_traverse ... ok
[INFO] [stdout] test graph::analysis::path::tests::test_is_super_partial_common_reads ... ok
[INFO] [stdout] test graph::analysis::path::tests::test_tsr_computed_from_edge_sr ... ok
[INFO] [stdout] test graph::tests::test_from_str ... ok
[INFO] [stdout] test graph::node::tests::test_exons_len ... ok
[INFO] [stdout] test graph::attr::tests::test_attribute_display ... ok
[INFO] [stdout] test graph::node::tests::test_node_reference_start_end ... ok
[INFO] [stdout] test graph::path::tests::test_path_creation_and_accessors ... ok
[INFO] [stdout] test graph::node::tests::test_node_to_json ... ok
[INFO] [stdout] test graph::tests::test_create_empty_graph ... ok
[INFO] [stdout] test graph::tests::test_add_edge ... ok
[INFO] [stdout] test graph::tests::test_parse_node_line ... ok
[INFO] [stdout] test graph::analysis::path::tests::test_tsr_mixed_sr_types ... ok
[INFO] [stdout] test graph::tests::test_parse_header_line ... ok
[INFO] [stdout] test graph::utils::tests::test_full_hash ... ok
[INFO] [stdout] test graph::utils::tests::test_invalid_length ... ok
[INFO] [stdout] test graph::utils::tests::test_numeric_identifier ... ok
[INFO] [stdout] test graph::utils::tests::test_starts_with_letter ... ok
[INFO] [stdout] test graph::analysis::graph::tests::test_detect_bubbles ... ok
[INFO] [stdout] test graph::tests::test_paths ... ok
[INFO] [stdout] test graph::tests::test_parse_unordered_group ... ok
[INFO] [stdout] test graph::tests::test_to_dot ... ok
[INFO] [stdout] test graph::tests::test_read_legacy_default_graph_id ... ok
[INFO] [stdout] test graph::utils::tests::test_basic_hash ... ok
[INFO] [stdout] test graph::tests::test_read_from_file ... FAILED
[INFO] [stdout] test graph::tests::test_to_json ... ok
[INFO] [stdout] test graph::tests::test_traverse ... ok
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- graph::tests::test_read_from_file stdout ----
[INFO] [stdout] Error: Read-only file system (os error 30)
[INFO] [stdout] 
[INFO] [stdout] Stack backtrace:
[INFO] [stdout]    0: <anyhow::Error as core::convert::From<core::io::error::Error>>::from
[INFO] [stdout]    1: <tsg_core::graph::TSGFile>::to_file::<&str>
[INFO] [stdout]    2: tsg_core::graph::tests::test_read_from_file
[INFO] [stdout]    3: <tsg_core::graph::tests::test_read_from_file::{closure#0} as core::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]    4: test::__rust_begin_short_backtrace::<core::result::Result<(), alloc::string::String>, fn() -> core::result::Result<(), alloc::string::String>>
[INFO] [stdout]    5: test::run_test::{closure#0}
[INFO] [stdout]    6: std::sys::backtrace::__rust_begin_short_backtrace::<test::run_test::{closure#1}, ()>
[INFO] [stdout]    7: <std::thread::lifecycle::spawn_unchecked<test::run_test::{closure#1}, ()>::{closure#1} as core::ops::function::FnOnce<()>>::call_once::{shim:vtable#0}
[INFO] [stdout]    8: <std::sys::thread::unix::Thread>::new::thread_start
[INFO] [stdout]    9: <unknown>
[INFO] [stdout]   10: clone
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     graph::tests::test_read_from_file
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 56 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass `--lib`
[INFO] running `Command { std: "docker" "inspect" "ec6c59ceddb81f0936ea4b46b731f5c166423537ee3f9088f37dcb3ab8c36b94", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "ec6c59ceddb81f0936ea4b46b731f5c166423537ee3f9088f37dcb3ab8c36b94", kill_on_drop: false }`
[INFO] [stdout] ec6c59ceddb81f0936ea4b46b731f5c166423537ee3f9088f37dcb3ab8c36b94
