[INFO] fetching crate fastdedup 1.2.2...
[INFO] testing fastdedup-1.2.2 against 1.100.0-beta.1+cargoflags=--release for beta-release-1.100-2
[INFO] extracting crate fastdedup 1.2.2 into /workspace/builds/worker-2-tc2/source
[INFO] removed /workspace/builds/worker-2-tc2/source/.cargo/config.toml
[INFO] started tweaking crates.io crate fastdedup 1.2.2
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate fastdedup 1.2.2
[INFO] tweaked toml for crates.io crate fastdedup 1.2.2 written to /workspace/builds/worker-2-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate fastdedup 1.2.2 on toolchain 1.100.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate fastdedup 1.2.2 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
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[INFO] [stdout] 6cfa398f4f0e425c1d1ef0739ed7a42734d11f1c1d886cc6127ab0e754a2f023
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[INFO] running `Command { std: "docker" "inspect" "6cfa398f4f0e425c1d1ef0739ed7a42734d11f1c1d886cc6127ab0e754a2f023", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6cfa398f4f0e425c1d1ef0739ed7a42734d11f1c1d886cc6127ab0e754a2f023" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6cfa398f4f0e425c1d1ef0739ed7a42734d11f1c1d886cc6127ab0e754a2f023", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6cfa398f4f0e425c1d1ef0739ed7a42734d11f1c1d886cc6127ab0e754a2f023" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling libc v0.2.182
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[INFO] [stderr]    Compiling fastdedup v1.2.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 1m 14s
[INFO] running `Command { std: "docker" "inspect" "6cfa398f4f0e425c1d1ef0739ed7a42734d11f1c1d886cc6127ab0e754a2f023", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6cfa398f4f0e425c1d1ef0739ed7a42734d11f1c1d886cc6127ab0e754a2f023" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }`
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[INFO] [stderr]    Compiling globwalk v0.9.1
[INFO] [stderr]    Compiling assert_fs v1.1.3
[INFO] [stderr]    Compiling fastdedup v1.2.2 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 35.24s
[INFO] running `Command { std: "docker" "inspect" "6cfa398f4f0e425c1d1ef0739ed7a42734d11f1c1d886cc6127ab0e754a2f023", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6cfa398f4f0e425c1d1ef0739ed7a42734d11f1c1d886cc6127ab0e754a2f023" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--release", kill_on_drop: false }`
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 0.11s
[INFO] [stderr]      Running unittests src/main.rs (/opt/rustwide/target/release/build/fastdedup/4648ead7b06f0f53/out/fdedup-4648ead7b06f0f53)
[INFO] [stdout] 
[INFO] [stdout] running 25 tests
[INFO] [stdout] test hasher::tests::test_hash_sequence_deterministic ... ok
[INFO] [stdout] test hasher::tests::test_hash_pair_identical_mates_still_valid ... ok
[INFO] [stdout] test hasher::tests::test_verifier_distinct_sequences ... ok
[INFO] [stdout] test utils::tests::test_base_read_id_strips_mate_suffix ... ok
[INFO] [stdout] test utils::tests::test_birthday_128bit_at_2_pow_32 ... ok
[INFO] [stdout] test hasher::tests::test_hash_pair_deterministic ... ok
[INFO] [stdout] test utils::tests::test_birthday_64bit_at_2_pow_32 ... ok
[INFO] [stdout] test utils::tests::test_bytes_per_read_plain_150bp ... ok
[INFO] [stdout] test hasher::tests::test_verifier_detects_duplicate ... ok
[INFO] [stdout] test utils::tests::test_bytes_per_read_zero_length_no_panic ... ok
[INFO] [stdout] test hasher::tests::test_hash_pair_order_dependent ... ok
[INFO] [stdout] test utils::tests::test_birthday_zero_sequences ... ok
[INFO] [stdout] test utils::tests::test_buffer_size_ceiling_clamping ... ok
[INFO] [stdout] test utils::tests::test_bytes_per_read_gz_150bp ... ok
[INFO] [stderr]      Running tests/cli.rs (/opt/rustwide/target/release/build/fastdedup/a3f226a99e43593c/out/cli-a3f226a99e43593c)
[INFO] [stdout] test utils::tests::test_output_format_fasta ... ok
[INFO] [stdout] test utils::tests::test_output_format_fastq_default ... ok
[INFO] [stdout] test utils::tests::test_buffer_size_floor_clamping ... ok
[INFO] [stdout] test utils::tests::test_buffer_size_illumina_150bp ... ok
[INFO] [stdout] test utils::tests::test_get_hash_method_threshold_one_forces_64 ... ok
[INFO] [stdout] test utils::tests::test_birthday_one_sequence ... ok
[INFO] [stdout] test utils::tests::test_is_gz ... ok
[INFO] [stdout] test utils::tests::test_get_hash_method_large_dataset_selects_128 ... ok
[INFO] [stdout] test utils::tests::test_get_hash_method_threshold_zero_forces_128 ... ok
[INFO] [stdout] test utils::tests::test_get_hash_method_tipping_point ... ok
[INFO] [stdout] test utils::tests::test_get_hash_method_small_dataset_selects_64 ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 25 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 47 tests
[INFO] [stdout] test test_entree_fastq_gz_compresse ... ok
[INFO] [stdout] test test_compression_gz_valide_fasta ... ok
[INFO] [stdout] test test_paire_desync_fin_fichier_r1_plus_long ... ok
[INFO] [stdout] test test_fichier_sortie_gz_corrompu ... ok
[INFO] [stdout] test test_compression_gz_valide_fastq ... ok
[INFO] [stdout] test test_entree_fastq_gz_dry_run ... ok
[INFO] [stdout] test test_deduplication_preservee_apres_compression ... ok
[INFO] [stdout] test test_avertissement_hash_et_threshold_ignores ... ok
[INFO] [stdout] test test_entree_fasta_sortie_fastq_non_supporte ... ok
[INFO] [stdout] test test_fichier_entree_inexistant ... ok
[INFO] [stdout] test test_entree_fasta_sortie_fasta ... ok
[INFO] [stdout] test test_hachage_128_bits_explicite ... ok
[INFO] [stdout] test test_fichier_entree_vide ... ok
[INFO] [stdout] test test_hachage_64_bits_explicite ... ok
[INFO] [stdout] test test_fichier_sortie_chemin_inexistant ... ok
[INFO] [stdout] test test_fichier_entree_mauvais_format ... ok
[INFO] [stdout] test test_paire_desynchronisee_en_tete_bloquee ... ok
[INFO] [stdout] test test_force_overwrites_existing_file ... ok
[INFO] [stdout] test test_paire_sortie_fasta ... ok
[INFO] [stdout] test test_paire_erreur_sortie_r2_manquante ... ok
[INFO] [stdout] test test_paire_desync_fin_fichier_r2_plus_long ... ok
[INFO] [stdout] test test_paire_reprise_depuis_sortie_existante ... ok
[INFO] [stdout] test test_paire_entree_fasta_sortie_fastq_non_supporte ... ok
[INFO] [stdout] test test_paire_sortie_fasta_gz ... ok
[INFO] [stdout] test test_selection_automatique_hash_128_bits_via_threshold ... ok
[INFO] [stdout] test test_hachage_64_et_128_bits_produisent_le_meme_resultat ... ok
[INFO] [stdout] test test_paire_sortie_fastq_gz ... ok
[INFO] [stdout] test test_paire_formats_incoherents ... ok
[INFO] [stdout] test test_paire_reprise_synchronisation_r1_r2 ... ok
[INFO] [stdout] test test_sortie_fasta_extension_fa ... ok
[INFO] [stdout] test test_selection_automatique_hash_64_bits_via_threshold ... ok
[INFO] [stdout] test test_paire_entree_fasta_sortie_fasta ... ok
[INFO] [stdout] test test_sortie_fq_gz_compresse ... ok
[INFO] [stdout] test test_sortie_fastq_gz_compresse ... ok
[INFO] [stdout] test test_paire_sortie_fastq ... ok
[INFO] [stdout] test test_taux_duplication_50_pourcent ... ok
[INFO] [stdout] test test_sortie_fastq_non_compresse ... ok
[INFO] [stdout] test test_sortie_fasta_gz_compresse ... ok
[INFO] [stdout] test test_sortie_fq_extension ... ok
[INFO] [stdout] test test_taux_duplication_30_pourcent_novaseq ... ok
[INFO] [stdout] test test_sortie_fasta_extension_fasta ... ok
[INFO] [stdout] test test_taux_duplication_9_09_pourcent ... ok
[INFO] [stdout] test test_paire_taux_duplication_33_pourcent ... FAILED
[INFO] [stdout] test test_sortie_fasta_extension_fna ... ok
[INFO] [stdout] test test_taux_duplication_entree_toutes_identiques ... ok
[INFO] [stdout] test test_taux_duplication_zero_pourcent ... ok
[INFO] [stderr] error: test failed, to rerun pass `--test cli`
[INFO] [stdout] test test_without_force_resumes_from_existing_output ... ok
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- test_paire_taux_duplication_33_pourcent stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'test_paire_taux_duplication_33_pourcent' (2636) panicked at /rustc/e3feeb59cd1bdd011a2bfcc0747b55125d9b8527/library/core/src/ops/function.rs:250:5:
[INFO] [stdout] Unexpected failure.
[INFO] [stdout] code=1
[INFO] [stdout] stderr=``````
[INFO] [stdout] Error: Desynchronization detected at the end: one file contains more reads than the other (R1 and R2 length mismatch).
[INFO] [stdout] 
[INFO] [stdout] Stack backtrace:
[INFO] [stdout]    0: <unknown>
[INFO] [stdout]    1: <unknown>
[INFO] [stdout]    2: <unknown>
[INFO] [stdout]    3: <unknown>
[INFO] [stdout]    4: <unknown>
[INFO] [stdout]    5: <unknown>
[INFO] [stdout]    6: __libc_start_main
[INFO] [stdout]    7: <unknown>
[INFO] [stdout] ```
[INFO] [stdout] ```
[INFO] [stdout] command=`"/opt/rustwide/target/release/fdedup" "-1" "/tmp/.tmp2HTeYy/R1.fastq" "-2" "/tmp/.tmp2HTeYy/R2.fastq" "-p" "/tmp/.tmp2HTeYy/dummy_r2.fastq" "-s" "-v"`
[INFO] [stdout] code=1
[INFO] [stdout] stdout=```
[INFO] [stdout] Primary input file (R1): /tmp/.tmp2HTeYy/R1.fastq
[INFO] [stdout] Primary output file (R1): output_R1.fastq.gz
[INFO] [stdout] Expected read length: 150 bp
[INFO] [stdout] Total estimated hash table capacity: 155 fragments
[INFO] [stdout] Secondary input file (R2): /tmp/.tmp2HTeYy/R2.fastq
[INFO] [stdout] Secondary output file (R2): /tmp/.tmp2HTeYy/dummy_r2.fastq
[INFO] [stdout] --- Starting Paired-End Processing ---
[INFO] [stdout] Paired-End Mode: 64-bit Combined Hash
[INFO] [stdout] --dry-run enabled: calculating Paired-End duplication rate.
[INFO] [stdout] ```
[INFO] [stdout] 
[INFO] [stdout] stderr=```
[INFO] [stdout] Error: Desynchronization detected at the end: one file contains more reads than the other (R1 and R2 length mismatch).
[INFO] [stdout] 
[INFO] [stdout] Stack backtrace:
[INFO] [stdout]    0: <unknown>
[INFO] [stdout]    1: <unknown>
[INFO] [stdout]    2: <unknown>
[INFO] [stdout]    3: <unknown>
[INFO] [stdout]    4: <unknown>
[INFO] [stdout]    5: <unknown>
[INFO] [stdout]    6: __libc_start_main
[INFO] [stdout]    7: <unknown>
[INFO] [stdout] ```
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x5cff65370c65 - <unknown>
[INFO] [stdout]    1:     0x5cff65352e6a - <unknown>
[INFO] [stdout]    2:     0x5cff653702fb - <unknown>
[INFO] [stdout]    3:     0x5cff6536fddf - <unknown>
[INFO] [stdout]    4:     0x5cff6536fa0a - <unknown>
[INFO] [stdout]    5:     0x5cff6536f545 - <unknown>
[INFO] [stdout]    6:     0x5cff65396381 - <unknown>
[INFO] [stdout]    7:     0x5cff65396339 - <unknown>
[INFO] [stdout]    8:     0x5cff6539683c - <unknown>
[INFO] [stdout]    9:     0x5cff65352cfb - <unknown>
[INFO] [stdout]   10:     0x5cff6534fbf3 - <unknown>
[INFO] [stdout]   11:     0x5cff653402c2 - <unknown>
[INFO] [stdout]   12:     0x5cff653b434b - <unknown>
[INFO] [stdout]   13:     0x5cff653afde0 - <unknown>
[INFO] [stdout]   14:     0x5cff653af50c - <unknown>
[INFO] [stdout]   15:     0x5cff653cf23c - <unknown>
[INFO] [stdout]   16:     0x5cff653984b4 - <unknown>
[INFO] [stdout]   17:     0x75f868205dfa - <unknown>
[INFO] [stdout]   18:     0x75f8682993d4 - clone
[INFO] [stdout]   19:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     test_paire_taux_duplication_33_pourcent
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 46 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.15s
[INFO] [stdout] 
[INFO] running `Command { std: "docker" "inspect" "6cfa398f4f0e425c1d1ef0739ed7a42734d11f1c1d886cc6127ab0e754a2f023", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6cfa398f4f0e425c1d1ef0739ed7a42734d11f1c1d886cc6127ab0e754a2f023", kill_on_drop: false }`
[INFO] [stdout] 6cfa398f4f0e425c1d1ef0739ed7a42734d11f1c1d886cc6127ab0e754a2f023
