[INFO] fetching crate phylo 6.0.0...
[INFO] testing phylo-6.0.0 against 1.100.0-beta.1+cargoflags=--release for beta-release-1.100-2
[INFO] extracting crate phylo 6.0.0 into /workspace/builds/worker-5-tc2/source
[INFO] started tweaking crates.io crate phylo 6.0.0
[INFO] removed 0 missing examples
[INFO] removed 0 missing tests
[INFO] finished tweaking crates.io crate phylo 6.0.0
[INFO] tweaked toml for crates.io crate phylo 6.0.0 written to /workspace/builds/worker-5-tc2/source/Cargo.toml
[INFO] validating manifest of crates.io crate phylo 6.0.0 on toolchain 1.100.0-beta.1
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--manifest-path" "Cargo.toml" "--no-deps", kill_on_drop: false }`
[INFO] crate crates.io crate phylo 6.0.0 already has a lockfile, it will not be regenerated
[INFO] running `Command { std: CARGO_HOME="/workspace/cargo-home" RUSTUP_HOME="/workspace/rustup-home" "/workspace/cargo-home/bin/cargo" "+1.100.0-beta.1" "fetch" "--manifest-path" "Cargo.toml", kill_on_drop: false }`
[INFO] [stderr]     Blocking waiting for file lock on package cache
[INFO] running `Command { std: "docker" "create" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/source:/opt/rustwide/workdir:ro,Z" "-v" "/var/lib/crater-agent-workspace/builds/worker-5-tc2/target:/opt/rustwide/target:rw,Z" "-v" "/var/lib/crater-agent-workspace/cargo-home:/opt/rustwide/cargo-home:ro,Z" "-v" "/var/lib/crater-agent-workspace/rustup-home:/opt/rustwide/rustup-home:ro,Z" "-m" "1610612736" "--network" "none" "ghcr.io/rust-lang/crates-build-env/linux@sha256:77db811e55d90add9212f6832c23229e3de5f1c1f9905e8cb07319ea15df73ac" "sleep" "infinity", kill_on_drop: false }`
[INFO] [stdout] 6af3da435d82ed4290258bdf4f807df70ed22fe33948715a4b03ec3f0a2f3c8b
[INFO] running `Command { std: "docker" "start" "6af3da435d82ed4290258bdf4f807df70ed22fe33948715a4b03ec3f0a2f3c8b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6af3da435d82ed4290258bdf4f807df70ed22fe33948715a4b03ec3f0a2f3c8b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6af3da435d82ed4290258bdf4f807df70ed22fe33948715a4b03ec3f0a2f3c8b" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "metadata" "--no-deps" "--format-version=1", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "inspect" "6af3da435d82ed4290258bdf4f807df70ed22fe33948715a4b03ec3f0a2f3c8b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6af3da435d82ed4290258bdf4f807df70ed22fe33948715a4b03ec3f0a2f3c8b" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "build" "--frozen" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling libc v0.2.189
[INFO] [stderr]    Compiling safe_arch v0.7.4
[INFO] [stderr]    Compiling num-bigint v0.4.8
[INFO] [stderr]    Compiling num-iter v0.1.46
[INFO] [stderr]    Compiling fxhash v0.2.1
[INFO] [stderr]    Compiling vers-vecs v1.10.1
[INFO] [stderr]    Compiling itertools v0.11.0
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling wide v0.7.33
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling getrandom v0.2.17
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling num v0.4.3
[INFO] [stderr]    Compiling rand v0.8.7
[INFO] [stderr]    Compiling simba v0.9.1
[INFO] [stderr]    Compiling nalgebra v0.33.3
[INFO] [stderr]    Compiling phylo v6.0.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 26.52s
[INFO] running `Command { std: "docker" "inspect" "6af3da435d82ed4290258bdf4f807df70ed22fe33948715a4b03ec3f0a2f3c8b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6af3da435d82ed4290258bdf4f807df70ed22fe33948715a4b03ec3f0a2f3c8b" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--no-run" "--message-format=json" "--release", kill_on_drop: false }`
[INFO] [stderr]    Compiling memchr v2.8.3
[INFO] [stderr]    Compiling getrandom v0.2.17
[INFO] [stderr]    Compiling matrixmultiply v0.3.11
[INFO] [stderr]    Compiling num-integer v0.1.46
[INFO] [stderr]    Compiling serde v1.0.229
[INFO] [stderr]    Compiling ppv-lite86 v0.2.21
[INFO] [stderr]    Compiling num-complex v0.4.6
[INFO] [stderr]    Compiling lexical-core v0.7.6
[INFO] [stderr]    Compiling nom v5.1.3
[INFO] [stderr]    Compiling bzip2-sys v0.1.13+1.0.8
[INFO] [stderr]    Compiling lzma-sys v0.1.20
[INFO] [stderr]    Compiling arrayvec v0.5.2
[INFO] [stderr]    Compiling syn v1.0.109
[INFO] [stderr]    Compiling clap_builder v4.6.6
[INFO] [stderr]    Compiling num-traits v0.1.43
[INFO] [stderr]    Compiling serde v0.8.23
[INFO] [stderr]    Compiling yaml-rust v0.4.5
[INFO] [stderr]    Compiling rand_core v0.6.4
[INFO] [stderr]    Compiling miniz_oxide v0.8.9
[INFO] [stderr]    Compiling half v2.7.1
[INFO] [stderr]    Compiling num-bigint v0.4.8
[INFO] [stderr]    Compiling approx v0.5.1
[INFO] [stderr]    Compiling ordered-float v2.10.1
[INFO] [stderr]    Compiling thiserror-impl v1.0.69
[INFO] [stderr]    Compiling dirs-sys v0.3.7
[INFO] [stderr]    Compiling rust-ini v0.13.0
[INFO] [stderr]    Compiling fixedbitset v0.4.2
[INFO] [stderr]    Compiling lazy_static v0.2.11
[INFO] [stderr]    Compiling rand_chacha v0.3.1
[INFO] [stderr]    Compiling ciborium-ll v0.2.2
[INFO] [stderr]    Compiling aho-corasick v1.1.5
[INFO] [stderr]    Compiling serde_json v1.0.151
[INFO] [stderr]    Compiling toml v0.5.11
[INFO] [stderr]    Compiling rand v0.8.7
[INFO] [stderr]    Compiling thiserror v1.0.69
[INFO] [stderr]    Compiling serde-value v0.7.0
[INFO] [stderr]    Compiling flate2 v1.1.9
[INFO] [stderr]    Compiling buffer-redux v1.1.0
[INFO] [stderr]    Compiling tint v1.0.1
[INFO] [stderr]    Compiling petgraph v0.6.5
[INFO] [stderr]    Compiling directories v4.0.1
[INFO] [stderr]    Compiling console v0.15.11
[INFO] [stderr]    Compiling simba v0.9.1
[INFO] [stderr]    Compiling xz2 v0.1.7
[INFO] [stderr]    Compiling num-iter v0.1.46
[INFO] [stderr]    Compiling bzip2 v0.4.4
[INFO] [stderr]    Compiling portable-atomic v1.14.0
[INFO] [stderr]    Compiling num-rational v0.4.2
[INFO] [stderr]    Compiling tinytemplate v1.2.1
[INFO] [stderr]    Compiling regex-automata v0.4.18
[INFO] [stderr]    Compiling atty v0.2.14
[INFO] [stderr]    Compiling number_prefix v0.4.0
[INFO] [stderr]    Compiling ansi_term v0.12.1
[INFO] [stderr]    Compiling clap v4.6.6
[INFO] [stderr]    Compiling accurate v0.3.1
[INFO] [stderr]    Compiling clap_complete v4.6.9
[INFO] [stderr]    Compiling indicatif v0.17.11
[INFO] [stderr]    Compiling needletail v0.5.1
[INFO] [stderr]    Compiling num v0.4.3
[INFO] [stderr]    Compiling ndarray v0.16.1
[INFO] [stderr]    Compiling plotters v0.3.7
[INFO] [stderr]    Compiling rand_distr v0.4.3
[INFO] [stderr]    Compiling ciborium v0.2.2
[INFO] [stderr]    Compiling rand_chacha v0.9.0
[INFO] [stderr]    Compiling itertools v0.10.5
[INFO] [stderr]    Compiling utf8-read v0.4.0
[INFO] [stderr]    Compiling proptest v1.11.0
[INFO] [stderr]    Compiling trait-set v0.3.0
[INFO] [stderr]    Compiling numeric_literals v0.2.0
[INFO] [stderr]    Compiling regex v1.13.1
[INFO] [stderr]    Compiling serde-hjson v0.9.1
[INFO] [stderr]    Compiling criterion v0.8.2
[INFO] [stderr]    Compiling config v0.11.0
[INFO] [stderr]    Compiling nalgebra v0.33.3
[INFO] [stderr]    Compiling ptree v0.4.0
[INFO] [stderr]    Compiling phylotree v0.1.3
[INFO] [stderr]    Compiling phylo v6.0.0 (/opt/rustwide/workdir)
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 2m 00s
[INFO] running `Command { std: "docker" "inspect" "6af3da435d82ed4290258bdf4f807df70ed22fe33948715a4b03ec3f0a2f3c8b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "exec" "-e" "SOURCE_DIR=/opt/rustwide/workdir" "-e" "CARGO_HOME=/opt/rustwide/cargo-home" "-e" "RUSTUP_HOME=/opt/rustwide/rustup-home" "-e" "CARGO_TARGET_DIR=/opt/rustwide/target" "-e" "CARGO_INCREMENTAL=0" "-e" "RUST_BACKTRACE=full" "-e" "RUSTFLAGS=--cap-lints=warn" "-e" "RUSTDOCFLAGS=--cap-lints=warn" "-w" "/opt/rustwide/workdir" "--user" "0:0" "6af3da435d82ed4290258bdf4f807df70ed22fe33948715a4b03ec3f0a2f3c8b" "/opt/rustwide/cargo-home/bin/cargo" "+1.100.0-beta.1" "test" "--frozen" "--release", kill_on_drop: false }`
[INFO] [stderr]     Finished `release` profile [optimized] target(s) in 0.36s
[INFO] [stderr]      Running unittests src/lib.rs (/opt/rustwide/target/release/build/phylo/1f83e473e16b876c/out/phylo-1f83e473e16b876c)
[INFO] [stdout] 
[INFO] [stdout] running 60 tests
[INFO] [stdout] test models::gtr::tests::test_with_gamma_categories_sum_to_one_weight ... ok
[INFO] [stdout] test models::gtr::tests::test_hky85_with_kappa_one_matches_jc69 ... ok
[INFO] [stdout] test models::gamma::tests::test_rates_are_increasing ... ok
[INFO] [stdout] test models::gamma::tests::test_weighted_mean_is_one ... ok
[INFO] [stdout] test models::gtr::tests::test_default_model_has_single_unit_category ... ok
[INFO] [stdout] test models::gtr::tests::test_with_gamma_then_invariant_combined ... ok
[INFO] [stdout] test models::gtr::tests::test_with_invariant_adds_rate_zero_category ... ok
[INFO] [stdout] test models::rate_matrix::tests::test_jc_transition ... ok
[INFO] [stdout] test models::gtr::tests::test_named_constructors_validate_params ... ok
[INFO] [stdout] test models::gtr::tests::test_invalid_invariant_proportion ... ok
[INFO] [stdout] test models::gamma::tests::test_invalid_params ... ok
[INFO] [stdout] test alignment::tests::test_fasta_parse ... ok
[INFO] [stdout] test alignment::tests::test_compression ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_alignment_fasta_uppercase ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_alignment_fasta_multiline ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_asr_with_zero_branch_length ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_alignment_fasta_whitespace_in_header ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_amino_acid_n_states ... ok
[INFO] [stdout] test models::gamma::tests::test_large_alpha_reduces_heterogeneity ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_compression_with_duplicate_patterns ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_compression_identical_columns ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_gtr_jc_p_zero_is_identity ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_gtr_jc_positive_entries ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_alignment_fasta_ragged_returns_error ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_gtr_jc_row_sums_to_one ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_joint_asr_all_gap_alignment ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_alignment_fasta_duplicate_id_returns_error ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_alignment_fasta_empty_fasta_returns_error ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_alignment_fasta_empty_header ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_compression_re_expansion ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_joint_vs_marginal_same_sequences_simple ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_log_likelihood_finite ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_amino_acid_ambiguity_profiles ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_gtr_custom_pi ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_log_likelihood_missing_taxon_errors ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_joint_asr_basic ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_marginal_asr_all_gap_alignment ... ok
[INFO] [stderr]      Running tests/memory-report.rs (/opt/rustwide/target/release/build/phylo/7d5aea986bb2d107/out/memory_report-7d5aea986bb2d107)
[INFO] [stdout] test models::gtr::tests::test_jc_transition ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_alignment_fasta_crlf ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_marginal_asr_basic ... ok
[INFO] [stdout] test models::gamma::tests::test_single_category_is_unit_rate ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_log_likelihood_matches_marginal_asr ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_gtr_detailed_balance ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_gtr_p_infinity_converges_to_pi ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_gtr_q_rows_sum_zero ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_marginal_asr_with_posteriors ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_amino_acid_canonical ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_marginal_asr_log_likelihood_positive ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_nucleotide_canonical_profiles ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_marginal_asr_likelihood_normalization ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_asr_missing_taxon_returns_error ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_nucleotide_ambiguity_profiles ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_nucleotide_char_of ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_profile_scaling_stability ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_reconstruction_sequence_string ... ok
[INFO] [stdout] test tree::likelihood::profile::tests::test_log_likelihood ... ok
[INFO] [stdout] test tree::likelihood::profile::tests::test_scaling ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_nucleotide_index_of ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_nucleotide_n_states ... ok
[INFO] [stdout] test tree::likelihood::integration_test::test_profile_log_likelihood_with_scale ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 60 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.02s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/node-tests.rs (/opt/rustwide/target/release/build/phylo/ed136d4c0dff8238/out/node_tests-ed136d4c0dff8238)
[INFO] [stdout] 
[INFO] [stdout] running 1 test
[INFO] [stdout] test memory_report ... ignored, reporting tool: run with --ignored --nocapture
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 0 passed; 0 failed; 1 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stderr]      Running tests/tree-tests.rs (/opt/rustwide/target/release/build/phylo/963fb7855c97031c/out/tree_tests-963fb7855c97031c)
[INFO] [stdout] 
[INFO] [stdout] running 4 tests
[INFO] [stdout] test bound_alias_traits_are_open ... ok
[INFO] [stdout] test test_set_id ... ok
[INFO] [stdout] test test_set_taxa ... ok
[INFO] [stdout] test test_parent_childs ... ok
[INFO] [stdout] 
[INFO] [stdout] test result: ok. 4 passed; 0 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.00s
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] running 59 tests
[INFO] [stdout] test contract_tree_keeps_exactly_the_requested_leaves ... ok
[INFO] [stdout] test contract_tree_roots_at_the_lca_of_the_subset ... ok
[INFO] [stdout] test const_lca ... ok
[INFO] [stdout] test balance_tree ... ok
[INFO] [stdout] test contract_tree_suppresses_unifurcations ... ok
[INFO] [stdout] test build_small_tree ... ok
[INFO] [stdout] test contract_tree_from_iter_matches_contract_tree_topology ... ok
[INFO] [stdout] test binary_nodes_do_not_over_reserve_children ... ok
[INFO] [stdout] test cluster_affinity ... ok
[INFO] [stdout] test median_node ... ok
[INFO] [stdout] test contract_tree_sums_edge_weights_across_suppressed_nodes ... ok
[INFO] [stdout] test distance_matrix ... ok
[INFO] [stdout] test contract_tree_with_oracle_preserves_weights ... ok
[INFO] [stdout] test contracted_tree_nodes_covers_the_contracted_tree ... ok
[INFO] [stdout] test induce_tree ... ok
[INFO] [stdout] test contract_tree_with_oracle_matches_contract_tree ... ok
[INFO] [stdout] test newick_to_newick_annotation_writers ... ok
[INFO] [stdout] test cophenetic_dist ... ok
[INFO] [stdout] test newick_tool_variations ... ok
[INFO] [stdout] test ola_from_vec_balanced_6 ... ok
[INFO] [stdout] test lca_oracle_rebuilds_correctly_after_mutation ... ok
[INFO] [stdout] test from_nodes_rebuilds_the_taxa_map ... ok
[INFO] [stdout] test ola_from_vec_right_comb ... ok
[INFO] [stdout] test bipartitions ... ok
[INFO] [stdout] test ola_to_vec_balanced_6 ... ok
[INFO] [stdout] test from_nexus_rejects_malformed_input ... ok
[INFO] [stdout] test ola_roundtrip_newick_3 ... ok
[INFO] [stdout] test newick_quoted_labels_and_escaping ... ok
[INFO] [stdout] test newick_malformed_input_does_not_panic ... ok
[INFO] [stdout] test newick_annotation_handlers ... ok
[INFO] [stdout] test newick_preserves_annotations ... ok
[INFO] [stdout] test ola_roundtrip_newick_5 ... ok
[INFO] [stdout] test ola_from_vec_left_comb ... ok
[INFO] [stdout] test ola_to_vec_balanced_4 ... ok
[INFO] [stdout] test ola_to_vec_left_comb ... ok
[INFO] [stdout] test ola_to_vec_mixed_5 ... ok
[INFO] [stdout] test read_nexus ... ok
[INFO] [stdout] test to_nexus_file_accepts_a_nex_path ... ok
[INFO] [stdout] test suppress_tree_node ... ok
[INFO] [stdout] test read_small_tree ... ok
[INFO] [stdout] test robinson_foulds ... ok
[INFO] [stdout] test relabelling_a_node_does_not_grow_the_taxa_map ... ok
[INFO] [stdout] test restricted_subtree_oracle_matches_a_fresh_build ... ok
[INFO] [stdout] test ola_to_vec_right_comb ... ok
[INFO] [stdout] test tree_nni ... ok
[INFO] [stdout] test uniform ... ok
[INFO] [stdout] test tree_iter ... ok
[INFO] [stdout] test unweighting_clears_every_edge_weight ... ok
[INFO] [stdout] test yule ... ok
[INFO] [stdout] test tree_spr ... ok
[INFO] [stdout] test subtree_extraction_leaves_no_phantom_nodes ... ok
[INFO] [stdout] test ola_from_vec_balanced_4 ... ok
[INFO] [stdout] test removing_a_node_removes_its_taxon ... ok
[INFO] [stdout] test next_id_is_the_lowest_vacant_slot ... ok
[INFO] [stdout] test tree_cluster ... ok
[INFO] [stdout] test pd ... FAILED
[INFO] [stdout] test precomputed_lca_matches_the_naive_walk ... ok
[INFO] [stdout] test newick_deep_tree_does_not_overflow_stack ... ok
[INFO] [stdout] test indexed_and_unindexed_lca_agree ... ok
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout] 
[INFO] [stdout] ---- pd stdout ----
[INFO] [stdout] 
[INFO] [stdout] thread 'pd' (2491) panicked at tests/tree-tests.rs:46:83:
[INFO] [stdout] called `Result::unwrap()` on an `Err` value: Os { code: 30, kind: ReadOnlyFilesystem, message: "Read-only file system" }
[INFO] [stdout] stack backtrace:
[INFO] [stdout]    0:     0x61530ece52d1 - <<std[617be2ca0a6fd877]::sys::backtrace::BacktraceLock>::print::DisplayBacktrace as core[a373ad73a504971]::fmt::Display>::fmt
[INFO] [stdout]    1:     0x61530ecfc24a - core[a373ad73a504971]::fmt::write
[INFO] [stdout]    2:     0x61530ece9c1c - <alloc[2e1b2a31b91974c5]::vec::Vec<u8> as core[a373ad73a504971]::io::write::Write>::write_fmt
[INFO] [stdout]    3:     0x61530ecbf8c6 - std[617be2ca0a6fd877]::panicking::default_hook::{closure#0}
[INFO] [stdout]    4:     0x61530ecdd069 - std[617be2ca0a6fd877]::panicking::default_hook
[INFO] [stdout]    5:     0x61530ec717e0 - test[aada8e7e76ba119b]::test_main_inner::{closure#0}
[INFO] [stdout]    6:     0x61530ecdd222 - std[617be2ca0a6fd877]::panicking::panic_with_hook
[INFO] [stdout]    7:     0x61530ecbf972 - std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0}
[INFO] [stdout]    8:     0x61530ecb8309 - std[617be2ca0a6fd877]::sys::backtrace::__rust_end_short_backtrace::<std[617be2ca0a6fd877]::panicking::panic_handler::{closure#0}, !>
[INFO] [stdout]    9:     0x61530ecc057d - __rustc[ea4f61d10b84890b]::rust_begin_unwind
[INFO] [stdout]   10:     0x61530ecfc9ac - core[a373ad73a504971]::panicking::panic_fmt
[INFO] [stdout]   11:     0x61530ecfc782 - core[a373ad73a504971]::result::unwrap_failed
[INFO] [stdout]   12:     0x61530ebfe723 - <tree_tests[53335d260a22bd9f]::pd::{closure#0} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once
[INFO] [stdout]   13:     0x61530ec64c2b - test[aada8e7e76ba119b]::__rust_begin_short_backtrace::<core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>, fn() -> core[a373ad73a504971]::result::Result<(), alloc[2e1b2a31b91974c5]::string::String>>
[INFO] [stdout]   14:     0x61530ec71e05 - test[aada8e7e76ba119b]::run_test::{closure#0}
[INFO] [stdout]   15:     0x61530ec6b6f4 - std[617be2ca0a6fd877]::sys::backtrace::__rust_begin_short_backtrace::<test[aada8e7e76ba119b]::run_test::{closure#1}, ()>
[INFO] [stdout]   16:     0x61530ec74e92 - <std[617be2ca0a6fd877]::thread::lifecycle::spawn_unchecked<test[aada8e7e76ba119b]::run_test::{closure#1}, ()>::{closure#1} as core[a373ad73a504971]::ops::function::FnOnce<()>>::call_once::{shim:vtable#0}
[INFO] [stdout]   17:     0x61530ece45ef - <std[617be2ca0a6fd877]::sys::thread::unix::Thread>::new::thread_start
[INFO] [stdout]   18:     0x7ce788bb2dfa - <unknown>
[INFO] [stdout]   19:     0x7ce788c463d4 - clone
[INFO] [stdout]   20:                0x0 - <unknown>
[INFO] [stdout] 
[INFO] [stdout] 
[INFO] [stdout] failures:
[INFO] [stdout]     pd
[INFO] [stdout] 
[INFO] [stdout] test result: FAILED. 58 passed; 1 failed; 0 ignored; 0 measured; 0 filtered out; finished in 0.63s
[INFO] [stdout] 
[INFO] [stderr] error: test failed, to rerun pass `--test tree-tests`
[INFO] running `Command { std: "docker" "inspect" "6af3da435d82ed4290258bdf4f807df70ed22fe33948715a4b03ec3f0a2f3c8b", kill_on_drop: false }`
[INFO] running `Command { std: "docker" "rm" "-f" "6af3da435d82ed4290258bdf4f807df70ed22fe33948715a4b03ec3f0a2f3c8b", kill_on_drop: false }`
[INFO] [stdout] 6af3da435d82ed4290258bdf4f807df70ed22fe33948715a4b03ec3f0a2f3c8b
